View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_high_8 (Length: 562)
Name: NF1711_high_8
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 16 - 551
Target Start/End: Complemental strand, 51729408 - 51728873
Alignment:
| Q |
16 |
cttctctgcttcatattatctccaatggtataatgtaattaacatttgttactaaccgaatcatatcatatagtaaggaatacagcattgaacnnnnnnn |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
51729408 |
cttctctgcttcatattatctccaatggtataatgtaattaacatttgttactaaccgaatcatatcatatagtaaggaatacaacattgaacaaataaa |
51729309 |
T |
|
| Q |
116 |
tattctgttatggctgctaaatgtatagctaattgtttcttgatgtgcaatctaaaatagaggcttggcatttcgaagttcattgagtcctaccttctgt |
215 |
Q |
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||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
51729308 |
tattctgttataggtgctaaatgtatagctaattgtttcttgatgtgcaatctaaaatagaggcttggcatttcaaagttcattgagtcctaccttctgt |
51729209 |
T |
|
| Q |
216 |
ggaaatttccattggagaagtatgatttaaaaccagaacacccttttgcggaggattatgcatcatgtcaaatggctataatgccagaaactttcttctc |
315 |
Q |
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| T |
51729208 |
ggaaatttccattggagaagtatgatttaaaaccagaacacccttttgcggaggattatgcatcatgtcaaatggctataatgccagaaaatttcttctc |
51729109 |
T |
|
| Q |
316 |
agaggtggaaaaaggcaaaattctacttaaaaaagcatcaaagtggtggttttgtaatgaaggaatcaaatttgaagataacactgaggtggaagccgat |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
51729108 |
agaggtggaaaaaggcaaaattctacttaaaaaagcatcaaagtggtggttttgtaatgaaggaatcgaatttgaagataacactgaggtggaagccgat |
51729009 |
T |
|
| Q |
416 |
gtagtgatccttgcaactggttttgatggaaagaaaaagatcaaaaccattttaccagagcctttttgtagcctgttggagtacccctctggccttatac |
515 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51729008 |
gtagtgatccttgcaactggttttaatggaaagaaaaagatcaaaaccattttaccagagcctttttgtagcctgttggagtacccctctggccttatac |
51728909 |
T |
|
| Q |
516 |
ctttgtacaggtaagaagtacttgtttgtgattcat |
551 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
51728908 |
ctttgtacaggtaagaagtacttgtttgtgattcat |
51728873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 5e-42; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 174 - 501
Target Start/End: Original strand, 19056564 - 19056891
Alignment:
| Q |
174 |
agaggcttggcatttcgaagttcattgagtcctaccttctgtggaaatttccattggagaagtatgatttaaaaccagaacacccttttgcggaggatta |
273 |
Q |
| |
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||||||||| ||||| |||||||| ||||||||| | || |||||| ||||||| |||||||||| || ||||||||||||||||||| ||| |||| |
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|
| T |
19056564 |
agaggcttgtgatttcaaagttcatagagtcctacttgctttggaaacttccattagagaagtatgggttgaaaccagaacacccttttgaggaagattt |
19056663 |
T |
|
| Q |
274 |
tgcatcatgtcaaatggctataatgccagaaactttcttctcagaggtggaaaaaggcaaaattctacttaaaaaagcatcaaagtggtggttttgtaat |
373 |
Q |
| |
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|||||| |||||||| ||||||| ||||||| ||| ||| |||| || ||||| ||||| | | |||| ||||||||||||||| ||||| ||| |
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| T |
19056664 |
tgcatcttgtcaaatagctataacaccagaaagttttttcaatgaggctgataaaggtaaaataatcttcaaaagagcatcaaagtggtgtttttggaat |
19056763 |
T |
|
| Q |
374 |
gaaggaatcaaatttgaagataacactgaggtggaagccgatgtagtgatccttgcaactggttttgatggaaagaaaaagatcaaaaccattttaccag |
473 |
Q |
| |
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| |||||| ||||||| || |||||| | | || || ||||| || | ||||||||||||| |||||| || || ||| ||||||||||||| |||| |
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| T |
19056764 |
ggaggaattgaatttgatgacaacactaaaattgatgctgatgttgttcttcttgcaactggttatgatgggaaaaagaagctcaaaaccattttgccag |
19056863 |
T |
|
| Q |
474 |
agcctttttgtagcctgttggagtaccc |
501 |
Q |
| |
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| T |
19056864 |
agcctttttctagcttgttggaataccc |
19056891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 174 - 501
Target Start/End: Complemental strand, 19188635 - 19188308
Alignment:
| Q |
174 |
agaggcttggcatttcgaagttcattgagtcctaccttctgtggaaatttccattggagaagtatgatttaaaaccagaacacccttttgcggaggatta |
273 |
Q |
| |
|
||||||||| ||||| |||||||| ||||||||| | || |||||| ||||||| |||||||||| || ||||||||||||||||||| ||| |||| |
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| T |
19188635 |
agaggcttgtgatttcaaagttcatagagtcctacttgctatggaaacttccattagagaagtatgggttgaaaccagaacacccttttgaggaagattt |
19188536 |
T |
|
| Q |
274 |
tgcatcatgtcaaatggctataatgccagaaactttcttctcagaggtggaaaaaggcaaaattctacttaaaaaagcatcaaagtggtggttttgtaat |
373 |
Q |
| |
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|||||| |||||||| ||||||| ||||||| ||| ||| |||| || ||||| ||||| | | |||| ||||||||||||||| ||||| ||| |
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|
| T |
19188535 |
tgcatcttgtcaaatagctataacaccagaaagttttttcaatgaggctgataaaggtaaaataatcttcaaaagagcatcaaagtggtgtttttggaat |
19188436 |
T |
|
| Q |
374 |
gaaggaatcaaatttgaagataacactgaggtggaagccgatgtagtgatccttgcaactggttttgatggaaagaaaaagatcaaaaccattttaccag |
473 |
Q |
| |
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| |||||| ||||||| || |||||| | | || || ||||| || | ||||||||||||| |||||| || || ||| ||||||||||||| |||| |
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| T |
19188435 |
ggaggaattgaatttgatgacaacactaaaattgatgctgatgttgttcttcttgcaactggttatgatgggaaaaagaagctcaaaaccattttgccag |
19188336 |
T |
|
| Q |
474 |
agcctttttgtagcctgttggagtaccc |
501 |
Q |
| |
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||||||||| |||| ||||||| ||||| |
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|
| T |
19188335 |
agcctttttctagcttgttggaataccc |
19188308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 286
Target Start/End: Complemental strand, 6895797 - 6895696
Alignment:
| Q |
185 |
atttcgaagttcattgagtcctaccttctgtggaaatttccattggagaagtatgatttaaaaccagaacacccttttgcggaggattatgcatcatgtc |
284 |
Q |
| |
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||||| |||||||| ||||| ||| | || |||||| ||||||| ||||| |||| || || ||||| ||| | |||| ||||||||||||||| |||| |
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| T |
6895797 |
atttcaaagttcatagagtcttacttgctttggaaacttccattagagaaatatggattgaagccagatcactcatttgaggaggattatgcatcttgtc |
6895698 |
T |
|
| Q |
285 |
aa |
286 |
Q |
| |
|
|| |
|
|
| T |
6895697 |
aa |
6895696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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