View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_high_82 (Length: 237)
Name: NF1711_high_82
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_high_82 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 21779110 - 21778895
Alignment:
| Q |
1 |
aataagggttactttgcaagaagaaaccacctctttctttcagtttctggtgatagagactcttctctaacgaattcagataccatgtttgaatttgaag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
21779110 |
aataagggttactttgcaagaagaaaccacctctttctttc------tggtgatagagactcttctctaacggattcagataccatgtttgaatttgaag |
21779017 |
T |
|
| Q |
101 |
aatcagacatttacaattccaatcatgctaactccatagagtttcgcaaatctattcatggctctcgcttggccaagaaaccatcttcaccgaagcagaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21779016 |
aatcagacatttacaattccaatcatgctaactccatagagtttcgcaaatctattcatggctctcgcttggccaagaaaccatcttcaccgaagcagaa |
21778917 |
T |
|
| Q |
201 |
gcaaatggacgctggagtagct |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
21778916 |
gcaaatggacgctggagtagct |
21778895 |
T |
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