View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_high_86 (Length: 235)
Name: NF1711_high_86
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_high_86 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 33833926 - 33834160
Alignment:
| Q |
1 |
ttgaataagtataatttatagtagccatcaagatcttggttatcaaatcgagattgaaatcgtgaatcagatgattttttaccgaatctaattatgaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
33833926 |
ttgaataagtataatttatagtagccatcaagatcttggttatcaaatcgagattgaaatcgtgaatcagatgactttttaccgaatctaaatatgaatc |
33834025 |
T |
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| Q |
101 |
gtaagacactgtcaataatgaattggaattcaccataatgacttgagattcaagataagtttcatgtccaaatagatacgcactagagattcgtattgat |
200 |
Q |
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| T |
33834026 |
gtaagacactgtcaataatgaattggaattcaccataatgacttgagattcaagataagtttcatgtccaaattgatacgcactagagattcgtattgat |
33834125 |
T |
|
| Q |
201 |
taggttcaatttagtctgcagtcgagaaatggatc |
235 |
Q |
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| T |
33834126 |
taggttcaatttagtatgcattcgagatatggatc |
33834160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 18363295 - 18363349
Alignment:
| Q |
161 |
ttcatgtccaaatagatacgcactagagattcgtattgattaggttcaatttagt |
215 |
Q |
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| T |
18363295 |
ttcatgtccaaatagatacgcacttaagattcgtatcgattgggttcaatttagt |
18363349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 30863965 - 30864028
Alignment:
| Q |
152 |
aagataagtttcatgtccaaatagatacgcactagagattcgtattgattaggttcaatttagt |
215 |
Q |
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| T |
30863965 |
aagatgagattcatgtccaaatagatacacactagagatttgtatcgattgagttcattttagt |
30864028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 32847681 - 32847735
Alignment:
| Q |
161 |
ttcatgtccaaatagatacgcactagagattcgtattgattaggttcaatttagt |
215 |
Q |
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| T |
32847681 |
ttcatgtccaaatagataaacattagagattcgtaccgataaggttcaatttagt |
32847735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 3113252 - 3113191
Alignment:
| Q |
147 |
gattcaagataagtttcatgtccaaatagatacgcactagagattcgtattgattaggttca |
208 |
Q |
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| T |
3113252 |
gattcaagatgagattcatgtccaaatagatgcacactagaggttcatatcgattgggttca |
3113191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 38340522 - 38340575
Alignment:
| Q |
161 |
ttcatgtccaaatagatacgcactagagattcgtattgattaggttcaatttag |
214 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| | |||||||||| |
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| T |
38340522 |
ttcatgtccaaatagatacacactagagattcgtattgattggtttcaatttag |
38340575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 215
Target Start/End: Original strand, 8082213 - 8082280
Alignment:
| Q |
148 |
attcaagataagtttcatgtccaaatagatacgcactagagattcgtattgattaggttcaatttagt |
215 |
Q |
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| T |
8082213 |
attcaagatgagattcatgtccaaatagatacacactagagatctgtatcaattgggttcaatttagt |
8082280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 44914885 - 44914832
Alignment:
| Q |
161 |
ttcatgtccaaatagatacgcactagagattcgtattgattaggttcaatttagt |
215 |
Q |
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|||||||||||||||||||| |||| |||||||||| |||||||||||||||||| |
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| T |
44914885 |
ttcatgtccaaatagatacgtacta-agattcgtatcgattaggttcaatttagt |
44914832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 3019466 - 3019516
Alignment:
| Q |
165 |
tgtccaaatagatacgcactagagattcgtattgattaggttcaatttagt |
215 |
Q |
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|||||||||||||||||||| |||||||||| |||| ||||||||||||| |
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| T |
3019466 |
tgtccaaatagatacgcacttaagattcgtatcgattgggttcaatttagt |
3019516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 6421483 - 6421443
Alignment:
| Q |
147 |
gattcaagataagtttcatgtccaaatagatacgcactaga |
187 |
Q |
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| T |
6421483 |
gattcaagatgaggttcatgtccaaatagatacacactaga |
6421443 |
T |
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