View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_high_88 (Length: 235)
Name: NF1711_high_88
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_high_88 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 3 - 220
Target Start/End: Original strand, 26073956 - 26074181
Alignment:
| Q |
3 |
tgtggttccatgtgtattaccttcaacagcatacgtc--------gtagatacactttgcccttttactgtctggtacaaaatgatcccacgcacgagaa |
94 |
Q |
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||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
26073956 |
tgtggttccatgtgtattaccttcagcagcatacgtcatattacagtaaatacactttgcccttttaccgtctggtacaaaatgatcccaagcacgagaa |
26074055 |
T |
|
| Q |
95 |
cgtttacgagtttttccaacgtcacctgccgcttcaccttctaagtcatgatcagaatcaacatcaattggattttcgacatcatttgtaggagcatcat |
194 |
Q |
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||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||| |
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| T |
26074056 |
cgtttacgattttttccgacgtcacctgccgcttcaccttgtaagtcatgatcagaatcaacatcaattggattttccacagcatttgtaggaacatcat |
26074155 |
T |
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| Q |
195 |
caacatccttgttctcctgcattaac |
220 |
Q |
| |
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|||||||| ||||||||||||||||| |
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| T |
26074156 |
caacatccatgttctcctgcattaac |
26074181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 3 - 220
Target Start/End: Original strand, 44272732 - 44272957
Alignment:
| Q |
3 |
tgtggttccatgtgtattaccttcaacagcatacgtc--------gtagatacactttgcccttttactgtctggtacaaaatgatcccacgcacgagaa |
94 |
Q |
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|
||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
44272732 |
tgtggttccatgtgtattaccttcagcagcatacgtcatattacagtaaatacactttgcccttttaccgtctggtacaaaatgatcccaagcacgagaa |
44272831 |
T |
|
| Q |
95 |
cgtttacgagtttttccaacgtcacctgccgcttcaccttctaagtcatgatcagaatcaacatcaattggattttcgacatcatttgtaggagcatcat |
194 |
Q |
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||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||| |
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| T |
44272832 |
cgtttacgattttttccgacgtcacctgccgcttcaccttgtaagtcatgatcagaatcaacatcaattggattttccacagcatttgtaggaacatcat |
44272931 |
T |
|
| Q |
195 |
caacatccttgttctcctgcattaac |
220 |
Q |
| |
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|||||||| ||||||||||||||||| |
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|
| T |
44272932 |
caacatccatgttctcctgcattaac |
44272957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 3 - 220
Target Start/End: Complemental strand, 1669747 - 1669522
Alignment:
| Q |
3 |
tgtggttccatgtgtattaccttcaacagcatacgtc--------gtagatacactttgcccttttactgtctggtacaaaatgatcccacgcacgagaa |
94 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
1669747 |
tgtggttccatgtgtattaccttcagcagcatacgtcatattacagtaaatacactttgcccttttaccgtctggtacaaaatgatcccaagcacgagaa |
1669648 |
T |
|
| Q |
95 |
cgtttacgagtttttccaacgtcacctgccgcttcaccttctaagtcatgatcagaatcaacatcaattggattttcgacatcatttgtaggagcatcat |
194 |
Q |
| |
|
|| |||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||| |
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|
| T |
1669647 |
cgcttacgattttttccgacgtcacctgccgcttcaccttgtaagtcatgatcagaatcaacatcaattggattttccacagcatttgtaggaacatcat |
1669548 |
T |
|
| Q |
195 |
caacatccttgttctcctgcattaac |
220 |
Q |
| |
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|||||||| ||||||||||||||||| |
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|
| T |
1669547 |
caacatccatgttctcctgcattaac |
1669522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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