View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_high_93 (Length: 231)
Name: NF1711_high_93
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_high_93 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 7294946 - 7295176
Alignment:
| Q |
1 |
tcatcagacgtctcacttaaagattatgtgtgctgttaatgaaaaacaatgagtcttatttttatcaccactatttcctaactgttattacaattttaat |
100 |
Q |
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| T |
7294946 |
tcatgagacgtctcacttaaagattatgtgtgctgttaatgaaaaacaatgagtcttatttttatcaccattatttcctaactgttattacaattttaat |
7295045 |
T |
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| Q |
101 |
ttagtttctttcaaaattaattcctcttcaattttgttttcacttggtgtctacctggatgtttaccctgctgttgtcaaattagagctcgtgagttcct |
200 |
Q |
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| T |
7295046 |
ttagtttctttcaaaattaattcctcttcaattttgttttcacttggtgtctacctggatgtttaccctgctgttgtcaaattagagctcgtgagttcct |
7295145 |
T |
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| Q |
201 |
acccaactcattttgttttctactagatttt |
231 |
Q |
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| T |
7295146 |
acccaactcattttgttttctactagatttt |
7295176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 56 - 227
Target Start/End: Original strand, 7291275 - 7291448
Alignment:
| Q |
56 |
ttatttttatcaccactatttcctaactgttattacaattttaatttagtttctttcaaaattaattcctcttcaattttgttttcacttggtgtctacc |
155 |
Q |
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| T |
7291275 |
ttatttttatcatcattatttcctgactgttattatagttttaatt-agtttctttcaaaattaattcctcttcaattttgttttcacttggtgtctacc |
7291373 |
T |
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| Q |
156 |
tggatgtttaccctgctgttgtcaaattagagctcgtgagt---tcctacccaactcattttgttttctactaga |
227 |
Q |
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| T |
7291374 |
tagatgtttaccctgctgttgtcaaattagagcttgtgagttcctcctatccaactcattttgttttctactaga |
7291448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 23327579 - 23327634
Alignment:
| Q |
164 |
taccctgctgttgtcaaattagagctcgtgagttcctacccaactcattttgtttt |
219 |
Q |
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| T |
23327579 |
taccctgatgttgtcaaattagagtttatgagtttctatccaactcattttgtttt |
23327634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 188
Target Start/End: Original strand, 26312611 - 26312694
Alignment:
| Q |
105 |
tttctttcaaaattaattcctcttcaattttgttttcacttggtgtctacctggatgtttaccctgctgttgtcaaattagagc |
188 |
Q |
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| T |
26312611 |
tttctttcacaattaatttctcttcaatttagtttccaataggggtccaccgagatgtttatcctgatgttgtcaaattagagc |
26312694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 206
Target Start/End: Original strand, 26289759 - 26289860
Alignment:
| Q |
105 |
tttctttcaaaattaattcctcttcaattttgttttcacttggtgtctacctggatgtttaccctgctgttgtcaaattagagctcgtgagttcctaccc |
204 |
Q |
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||||||| | |||||||| | ||||||||| ||||||| | || ||| ||| ||||||||||||| |||||| ||||| ||||| ||| ||| |||||| |
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| T |
26289759 |
tttcttttacaattaatttcacttcaatttggttttcaataggggtccaccgagatgtttaccctgatgttgtaaaatttgagcttgtgtgttactaccc |
26289858 |
T |
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| Q |
205 |
aa |
206 |
Q |
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|| |
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| T |
26289859 |
aa |
26289860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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