View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_high_94 (Length: 231)
Name: NF1711_high_94
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_high_94 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 6129521 - 6129738
Alignment:
| Q |
14 |
actctcacctcaattcctacatcaacactcaattgagtccttttctatgtacacaaatacgtcgctgcttaaatacaccttttcacaagggagttcctag |
113 |
Q |
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| T |
6129521 |
actctcacctcaattcctacatcaacactcaattgagtccttttctatgtacacaaatacgtcgctgcttaaatacaccttttcacaagggagttcctag |
6129620 |
T |
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| Q |
114 |
gttggaaacatggtatcacatttcttcatacaatgaagaaccttcccatgataaagttattttgaattttgcaaaattagatttcaatatgatgcagaag |
213 |
Q |
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| T |
6129621 |
gttggaaacatggtatcacatttcttcatacaatgaagaaccttcccatgataaagttattttgaattttgcaaaattagatttcaatatgatgcagaag |
6129720 |
T |
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| Q |
214 |
atgtaccaaaaagcactc |
231 |
Q |
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| T |
6129721 |
atgtaccaaaaagaactc |
6129738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 15 - 212
Target Start/End: Complemental strand, 34487189 - 34486992
Alignment:
| Q |
15 |
ctctcacctcaattcctacatcaacactcaattgagtccttttctatgtacacaaatacgtcgctgcttaaatacaccttttcacaagggagttcctagg |
114 |
Q |
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| T |
34487189 |
ctctcacctaaattccttgatcaccaataaattgagtccttttcttgagaaaaaaatacgccattgcttaaagacacctcttcacaagggggtccctagg |
34487090 |
T |
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| Q |
115 |
ttggaaacatggtatcacatttcttcatacaatgaagaaccttcccatgataaagttattttgaattttgcaaaattagatttcaatatgatgcagaa |
212 |
Q |
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| T |
34487089 |
ttggagacaaggtgctacatttcttcctatagtgaagaaccttcacatagtaaaattcttctaaactttgcaaaattagatttcaacatgttgcagaa |
34486992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 226
Target Start/End: Complemental strand, 34475171 - 34475042
Alignment:
| Q |
97 |
cacaagggagttcctaggttggaaacatggtatcacatttcttcatacaatgaagaaccttcccatgataaagttattttgaattttgcaaaattagatt |
196 |
Q |
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| T |
34475171 |
cacaagggagttcctaggttggagacaaggtgttacatatcttcctatgaagaagatccttcccatagtaaattttttctaaactttgcaaaattagatt |
34475072 |
T |
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| Q |
197 |
tcaatatgatgcagaagatgtaccaaaaag |
226 |
Q |
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| T |
34475071 |
tcaatatgctgcagaaaatgcatcaaaaag |
34475042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 196
Target Start/End: Complemental strand, 34461446 - 34461292
Alignment:
| Q |
42 |
tcaattgagtccttttctatgtacacaaatacgtcgctgcttaaatacaccttttcacaagggagttcctaggttggaaacatggtatcacatttcttca |
141 |
Q |
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| T |
34461446 |
tcaagtgagtccttttcttgctacacaagtacgtcactgcttaaagacacctctttacaagagagttcctagggttgagataaggtgttacatttcttcc |
34461347 |
T |
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| Q |
142 |
tacaatgaagaaccttcccatgataaagttattttgaattttgcaaaattagatt |
196 |
Q |
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| T |
34461346 |
tatggtgaagaatcttcccaaagtaaagttcttttaaactttgcaaaattagatt |
34461292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 34450725 - 34450539
Alignment:
| Q |
14 |
actctcacctcaattcctacatcaacactcaattgagtccttttctatgtacacaaatacgtcgctgcttaaatacaccttttcacaagggagttcctag |
113 |
Q |
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| T |
34450725 |
actctcaccttaattcccttatcaccaatgaattgagtccttttcttgctaaacaactatgccaatgcttaaggacacctcttcacaagggagttcctag |
34450626 |
T |
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| Q |
114 |
gttggaaacatggtatcacatttcttcatacaatgaagaaccttcccatgataaagttattttgaattttgcaaaattagatttcaa |
200 |
Q |
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| T |
34450625 |
gttagagacaaggtgttatatttcttcctatggtgaagaaccttcacatagtaaagttcttctaaactttgccaaattagatttcaa |
34450539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 226
Target Start/End: Complemental strand, 1594774 - 1594645
Alignment:
| Q |
97 |
cacaagggagttcctaggttggaaacatggtatcacatttcttcatacaatgaagaaccttcccatgataaagttattttgaattttgcaaaattagatt |
196 |
Q |
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||||||||| ||||||||||||| ||| || | |||| ||||| ||| | ||||| ||||||||| ||||||| || | || |||||||||||||||| |
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| T |
1594774 |
cacaagggaattcctaggttggagacaaggagttacatatcttcctacgaagaagatccttcccatagtaaagttcttctaaactttgcaaaattagatt |
1594675 |
T |
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| Q |
197 |
tcaatatgatgcagaagatgtaccaaaaag |
226 |
Q |
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|||| ||| | ||||| ||| | ||||||| |
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| T |
1594674 |
tcaacatgctacagaaaatgcatcaaaaag |
1594645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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