View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_high_95 (Length: 230)
Name: NF1711_high_95
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_high_95 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 2951782 - 2951553
Alignment:
| Q |
1 |
gatagtgagagattgaataaatattagaggaacatgtacatgacttcatccccacataactatgttaataattaagatataagttggtttnnnnnnnntt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2951782 |
gatagtgagagattgaataaatattagaggaacatgtacatgacttcatccccacataactatgttaataattaagatataagttggtttaaaaaaaatt |
2951683 |
T |
|
| Q |
101 |
taagatataagttaagtattccctccggccannnnnnnggttaagttccgtccagcctttattataactagaaatcctactttcacacttgataaaaata |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2951682 |
taagatataagttaagtattccctccggccatttttttggttaagttccgtccagcctttattataactagaaatcctactttcacacttgataaaaata |
2951583 |
T |
|
| Q |
201 |
ataacagttaagtcccttaaaagaaataat |
230 |
Q |
| |
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|||| ||||||||||| ||||||||||||| |
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| T |
2951582 |
ataatagttaagtcccataaaagaaataat |
2951553 |
T |
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