View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_high_96 (Length: 227)
Name: NF1711_high_96
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_high_96 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 52808005 - 52808221
Alignment:
| Q |
1 |
gtgagaaggatgtttgattggtgttagagcataagacaaacaaatacttgcatgattggtttatggatgaaacctggcaattatggtattttgctgtggt |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
52808005 |
gtgagaaggatgtttgattggtgttagagcataagacaaacaaatacttgcatgattggtctatggatgaaacctggcaattatggtattttgttgtggt |
52808104 |
T |
|
| Q |
101 |
gcgaattggtaattaatcaccttattaactatgtttggctgtactaataaacaactctatcggttagttaagaaactaaactaccagttacaaacaaagt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52808105 |
gcgaattggtaattaatcaccttattaactatgtttggctgtactaataaacaactctatcggttagttaagaaactaaactaccagttacaaacaaagt |
52808204 |
T |
|
| Q |
201 |
ttaagttacagcctatg |
217 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
52808205 |
ttaagttacagcctatg |
52808221 |
T |
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