View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1711_high_98 (Length: 226)
Name: NF1711_high_98
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_high_98 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 21779380 - 21779156
Alignment:
| Q |
1 |
aggacagagaaagaatattgaaccttatccacaatgccacccaatattattannnnnnnnnnnnnnnnnnaacaacaagaataaagaaaagcttcatatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
21779380 |
aggacagagaaagaatattgaaccttatccacaatgccacccaatattattattttttcttcttttttt-aacaacaagaataaagaaaagcttcatatg |
21779282 |
T |
|
| Q |
101 |
aagctctttataaaagcaagacaaaggcatgtcattgtggaaccaccattaacaacgtaggagaaagaaaaaataaaccattgatcatatgcaactaaac |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21779281 |
aagctctttataaaagcatgacaaaggcatgtcattgtggaaccaccattaacaacgtaggagaaagaaaaaataaaccattgatcatatgcaactaaac |
21779182 |
T |
|
| Q |
201 |
acacacatatactatatatattagtg |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
21779181 |
acacacatatactatatatattagtg |
21779156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 8408 times since January 2019
Visitors: 7802