View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1711_low_1 (Length: 746)

Name: NF1711_low_1
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1711_low_1
NF1711_low_1
[»] chr5 (25 HSPs)
chr5 (13-557)||(17768914-17769460)
chr5 (13-490)||(13517244-13517706)
chr5 (235-495)||(39685489-39685749)
chr5 (75-221)||(41640068-41640214)
chr5 (558-731)||(13650617-13650778)
chr5 (75-187)||(34034057-34034169)
chr5 (561-657)||(41884242-41884338)
chr5 (78-187)||(17695913-17696022)
chr5 (84-223)||(16908664-16908801)
chr5 (16-75)||(17695751-17695810)
chr5 (13-75)||(41639912-41639973)
chr5 (13-75)||(34034269-34034331)
chr5 (514-555)||(13517172-13517213)
chr5 (586-658)||(41903040-41903112)
chr5 (514-557)||(39685772-39685815)
chr5 (100-166)||(19948876-19948942)
chr5 (409-491)||(39570831-39570913)
chr5 (13-62)||(16908361-16908410)
chr5 (447-491)||(6735911-6735955)
chr5 (13-69)||(14521946-14522004)
chr5 (417-469)||(13734616-13734668)
chr5 (447-491)||(21360904-21360948)
chr5 (125-171)||(22099227-22099273)
chr5 (680-725)||(41884387-41884431)
chr5 (454-491)||(42092340-42092377)
[»] chr8 (24 HSPs)
chr8 (13-557)||(21441531-21442077)
chr8 (14-557)||(41323120-41323665)
chr8 (13-557)||(4072165-4072711)
chr8 (268-505)||(18606004-18606241)
chr8 (76-221)||(13541435-13541580)
chr8 (76-221)||(13682893-13683038)
chr8 (75-221)||(38699764-38699910)
chr8 (78-221)||(43115142-43115284)
chr8 (94-217)||(38172825-38172948)
chr8 (94-217)||(40118068-40118189)
chr8 (16-75)||(38699605-38699664)
chr8 (267-347)||(2811316-2811397)
chr8 (17-75)||(13541277-13541335)
chr8 (17-75)||(13683138-13683196)
chr8 (93-172)||(41570408-41570487)
chr8 (424-490)||(33538374-33538440)
chr8 (78-147)||(18881850-18881919)
chr8 (78-131)||(33613707-33613760)
chr8 (16-75)||(43115387-43115447)
chr8 (13-62)||(12491876-12491925)
chr8 (93-139)||(12491566-12491612)
chr8 (411-492)||(10713850-10713931)
chr8 (417-487)||(30932146-30932216)
chr8 (136-221)||(6115006-6115091)
[»] chr1 (38 HSPs)
chr1 (13-553)||(10619729-10620271)
chr1 (13-557)||(15757340-15757884)
chr1 (76-221)||(1600587-1600732)
chr1 (75-221)||(44961388-44961534)
chr1 (312-503)||(7493385-7493576)
chr1 (75-221)||(11142610-11142756)
chr1 (77-221)||(23614569-23614713)
chr1 (78-221)||(10177835-10177978)
chr1 (75-221)||(19313319-19313465)
chr1 (78-221)||(10406191-10406332)
chr1 (374-493)||(44429776-44429895)
chr1 (267-453)||(48770403-48770592)
chr1 (13-70)||(11142861-11142918)
chr1 (13-70)||(23614820-23614877)
chr1 (16-75)||(10406029-10406088)
chr1 (16-70)||(1600424-1600478)
chr1 (260-347)||(33409752-33409839)
chr1 (17-75)||(19313566-19313624)
chr1 (13-75)||(44961634-44961696)
chr1 (17-75)||(10178081-10178140)
chr1 (409-491)||(43410937-43411019)
chr1 (409-491)||(44592587-44592669)
chr1 (421-490)||(50303945-50304014)
chr1 (409-492)||(6764485-6764568)
chr1 (409-492)||(39618435-39618518)
chr1 (124-221)||(52111063-52111158)
chr1 (13-62)||(30950547-30950596)
chr1 (447-491)||(27773553-27773597)
chr1 (447-490)||(50099606-50099649)
chr1 (93-139)||(30950860-30950906)
chr1 (136-217)||(33241370-33241450)
chr1 (424-489)||(36156967-36157032)
chr1 (101-221)||(47367798-47367919)
chr1 (16-65)||(33240603-33240654)
chr1 (424-491)||(26632996-26633062)
chr1 (514-557)||(44429918-44429961)
chr1 (409-486)||(43022554-43022631)
chr1 (465-502)||(48770378-48770415)
[»] chr3 (32 HSPs)
chr3 (13-557)||(46823467-46824012)
chr3 (13-453)||(21295699-21296140)
chr3 (75-557)||(17652987-17653471)
chr3 (267-495)||(30342659-30342887)
chr3 (260-493)||(40285633-40285866)
chr3 (77-221)||(16152230-16152374)
chr3 (103-221)||(11027911-11028029)
chr3 (465-558)||(21295618-21295711)
chr3 (13-75)||(17652561-17652623)
chr3 (13-70)||(8554867-8554924)
chr3 (16-75)||(8832848-8832907)
chr3 (409-492)||(35238708-35238791)
chr3 (371-557)||(35734374-35734561)
chr3 (13-70)||(16152481-16152539)
chr3 (409-491)||(37224390-37224472)
chr3 (19-62)||(3457853-3457896)
chr3 (409-492)||(30500921-30501004)
chr3 (136-221)||(11906663-11906747)
chr3 (14-62)||(20842927-20842976)
chr3 (409-490)||(22775259-22775340)
chr3 (421-490)||(26769832-26769901)
chr3 (13-62)||(40764122-40764171)
chr3 (13-65)||(19795863-19795914)
chr3 (447-491)||(37057524-37057568)
chr3 (15-69)||(11027746-11027801)
chr3 (371-414)||(35734271-35734314)
chr3 (93-139)||(40763813-40763859)
chr3 (136-221)||(52403346-52403430)
chr3 (75-139)||(20843220-20843284)
chr3 (13-62)||(36312030-36312081)
chr3 (14-65)||(11906365-11906418)
chr3 (14-65)||(52400872-52400925)
[»] chr4 (35 HSPs)
chr4 (13-557)||(43892459-43893006)
chr4 (235-495)||(13768524-13768784)
chr4 (75-221)||(8745714-8745860)
chr4 (77-221)||(48861927-48862071)
chr4 (267-504)||(46721856-46722100)
chr4 (75-221)||(48841109-48841248)
chr4 (94-217)||(52628216-52628339)
chr4 (94-217)||(54165986-54166109)
chr4 (371-493)||(32824561-32824683)
chr4 (13-74)||(48862174-48862235)
chr4 (13-75)||(8745553-8745614)
chr4 (87-217)||(21790696-21790828)
chr4 (13-62)||(2407463-2407512)
chr4 (409-490)||(4608124-4608205)
chr4 (409-491)||(39606296-39606378)
chr4 (13-75)||(48841337-48841398)
chr4 (13-66)||(17815722-17815777)
chr4 (409-491)||(27512922-27513004)
chr4 (409-491)||(32595097-32595179)
chr4 (13-62)||(22786336-22786384)
chr4 (409-490)||(23237516-23237597)
chr4 (442-491)||(30226688-30226737)
chr4 (75-139)||(6016843-6016907)
chr4 (140-219)||(17816045-17816124)
chr4 (447-490)||(18493829-18493872)
chr4 (409-492)||(20618755-20618838)
chr4 (447-490)||(22375934-22375977)
chr4 (447-490)||(54508607-54508650)
chr4 (13-62)||(6016546-6016596)
chr4 (447-492)||(37927781-37927826)
chr4 (75-139)||(22786028-22786092)
chr4 (447-491)||(44222983-44223027)
chr4 (447-490)||(34021344-34021387)
chr4 (15-65)||(11950815-11950865)
chr4 (78-139)||(2407155-2407216)
[»] chr7 (37 HSPs)
chr7 (14-458)||(39719643-39720086)
chr7 (75-555)||(46211677-46212157)
chr7 (78-558)||(48609108-48609590)
chr7 (75-557)||(758503-758975)
chr7 (75-557)||(83631-84097)
chr7 (312-503)||(45809876-45810067)
chr7 (75-197)||(29715845-29715967)
chr7 (371-557)||(2826678-2826867)
chr7 (13-75)||(48608682-48608744)
chr7 (16-75)||(83202-83261)
chr7 (16-75)||(759343-759402)
chr7 (16-75)||(46211387-46211446)
chr7 (94-171)||(34659362-34659439)
chr7 (16-75)||(29715686-29715745)
chr7 (235-299)||(2826871-2826935)
chr7 (93-217)||(37202745-37202869)
chr7 (13-62)||(13465768-13465817)
chr7 (13-62)||(25439331-25439380)
chr7 (446-503)||(33335995-33336052)
chr7 (409-492)||(36558346-36558429)
chr7 (409-491)||(27098887-27098969)
chr7 (409-491)||(27179334-27179416)
chr7 (75-139)||(28491315-28491380)
chr7 (447-491)||(23333341-23333385)
chr7 (447-491)||(27571639-27571683)
chr7 (449-493)||(39719308-39719352)
chr7 (15-62)||(28491626-28491673)
chr7 (235-277)||(307183-307225)
chr7 (93-139)||(13465458-13465504)
chr7 (447-492)||(2410950-2410995)
chr7 (136-221)||(25592075-25592160)
chr7 (13-62)||(20926567-20926618)
chr7 (447-491)||(41532411-41532455)
chr7 (411-477)||(11468614-11468680)
chr7 (14-65)||(25592405-25592458)
chr7 (14-69)||(34659636-34659693)
chr7 (409-491)||(38892149-38892230)
[»] chr6 (17 HSPs)
chr6 (75-558)||(29363545-29364027)
chr6 (75-558)||(34729436-34729921)
chr6 (268-505)||(583151-583388)
chr6 (268-505)||(3886126-3886363)
chr6 (392-556)||(30386778-30386943)
chr6 (409-554)||(13703009-13703156)
chr6 (16-75)||(29363115-29363174)
chr6 (84-171)||(29486443-29486529)
chr6 (13-62)||(1780400-1780449)
chr6 (409-490)||(7590494-7590575)
chr6 (136-221)||(22956512-22956597)
chr6 (136-221)||(23831795-23831880)
chr6 (161-221)||(27673986-27674046)
chr6 (13-65)||(33224996-33225047)
chr6 (93-161)||(24428798-24428869)
chr6 (93-139)||(1780694-1780740)
chr6 (443-492)||(7639611-7639660)
[»] scaffold0049 (2 HSPs)
scaffold0049 (235-554)||(14937-15258)
scaffold0049 (306-505)||(46860-47059)
[»] chr2 (31 HSPs)
chr2 (235-558)||(5382484-5382815)
chr2 (267-495)||(10585096-10585324)
chr2 (268-505)||(36314406-36314644)
chr2 (268-505)||(1592923-1593160)
chr2 (374-558)||(1043292-1043478)
chr2 (374-557)||(9190281-9190466)
chr2 (75-221)||(4435192-4435338)
chr2 (317-453)||(7494759-7494895)
chr2 (311-431)||(22333390-22333510)
chr2 (465-557)||(7494679-7494771)
chr2 (16-75)||(7495082-7495141)
chr2 (260-435)||(12563666-12563837)
chr2 (81-170)||(38881702-38881795)
chr2 (317-554)||(10412608-10412838)
chr2 (14-76)||(4435465-4435527)
chr2 (75-150)||(42799189-42799264)
chr2 (13-56)||(16546748-16546791)
chr2 (371-502)||(25279998-25280128)
chr2 (14-69)||(38881902-38881963)
chr2 (409-491)||(41732610-41732692)
chr2 (13-62)||(39069785-39069834)
chr2 (447-490)||(2096103-2096146)
chr2 (16-61)||(37614791-37614836)
chr2 (13-62)||(42798896-42798945)
chr2 (447-491)||(21613399-21613443)
chr2 (514-553)||(22338623-22338662)
chr2 (93-132)||(39070246-39070285)
chr2 (93-139)||(16546354-16546400)
chr2 (13-62)||(16546667-16546717)
chr2 (450-491)||(9754039-9754080)
chr2 (450-491)||(14160606-14160647)
[»] scaffold0005 (2 HSPs)
scaffold0005 (75-221)||(292268-292414)
scaffold0005 (13-75)||(292106-292168)
[»] scaffold0481 (2 HSPs)
scaffold0481 (75-197)||(6646-6765)
scaffold0481 (16-66)||(6863-6913)
[»] scaffold0186 (1 HSPs)
scaffold0186 (78-221)||(22644-22787)
[»] scaffold1554 (2 HSPs)
scaffold1554 (13-75)||(948-1010)
scaffold1554 (137-221)||(729-812)
[»] scaffold0110 (1 HSPs)
scaffold0110 (94-217)||(6930-7053)
[»] scaffold0002 (1 HSPs)
scaffold0002 (78-215)||(428367-428502)


Alignment Details
Target: chr5 (Bit Score: 468; Significance: 0; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 13 - 557
Target Start/End: Original strand, 17768914 - 17769460
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaattttagtcttttcaaatgtaagtaaataggttatttgcaagaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  17768914 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaatcttagtcttttcaaatgtaaataaataggttatttgcaagaa 17769013  T
Q  113 actcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatgtttctttattgttgttattgagacgggaagtatcaaac 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17769014 actcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaaggtttctttattgttgttattgagacgggaagtatcaaac 17769113  T
Q  213 caatacaaacatagctataaagtgtgtggtgctggtgggctgagagcgtgtgggcctacaattgtattactttatttgttaaataaacgaaatattgtta 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17769114 caatacaaacatagctataaagtgtgtggtgctggtgggctgagagcgtgtgggcctacaattgtattactttatttgttaaataaacgaaatattgtta 17769213  T
Q  313 ttatttattatttatctcttttgggtgttaatctttcaattcttatagaacattatctaataatttgaagttcgaccggaagttaaataaagatagaaaa 412  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17769214 ttatttattatttatctcttttgggtgttaatctttcgattcttatacaacattatcaaataatttgaagttcgaccggaagttaaataaagatagaaaa 17769313  T
Q  413 aatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctactcgctaagaaaaata--nnnnn 510  Q
    ||| |||||||||||||||||||||| | || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||           
T  17769314 aattatttcatctaaaattaaacttggggtagctaaatatatattattaggggtagctaaatataaaaatatacctactcgctaagaaaaatattttttt 17769413  T
Q  511 nnngggtagcaagggctacccctcccttgtactaccatccgcccctg 557  Q
       ||||||||||||||||||||||||||||||||||||||||||||    
T  17769414 ttggggtagcaagggctacccctcccttgtactaccatccgcccctg 17769460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 13 - 490
Target Start/End: Complemental strand, 13517706 - 13517244
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaattttagtcttttcaaatgtaagtaaataggttatttgcaagaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13517706 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaattttagtcttttcaaatgtaaataaataggttatttgcaagaa 13517607  T
Q  113 actcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatgtttctttattgttgttattgagacgggaagtatcaaac 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13517606 actcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatgtttctttattgttgttattgagacgggaagtatcaaac 13517507  T
Q  213 caatacaaacatagctataaagtgtgtggtgctggtgggctgagagcgtgtgggcctacaattgtattactttatttgttaaataaacgaaatattgtta 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  13517506 caatacaaacatagctataaagtgtgtggtgctggtgggctgagagtgtgtggacctacaattgtattactttatttgttaaataaacaaaatattgtta 13517407  T
Q  313 ttatttattatttatctcttttgggtgttaatctttcaattcttatagaacattatctaataatttgaagttcgaccggaagttaaataaagatagaaaa 412  Q
    |||||||||||||||||||||| ||              |||||||| ||||||||| ||||||||||| |||||||| |||||||||||||||| ||||    
T  13517406 ttatttattatttatctcttttagg--------------ttcttatacaacattatcaaataatttgaatttcgaccgaaagttaaataaagataaaaaa 13517321  T
Q  413 aatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctac 490  Q
    ||| |||||||||||||||||||||| | ||  |||||||||||||||||| ||||||||||||||||||||||||||    
T  13517320 aattatttcatctaaaattaaacttggggtagttaaatatatattattagg-gtagctaaatataaaaatatacctac 13517244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 235 - 495
Target Start/End: Original strand, 39685489 - 39685749
Alignment:
Q  235 tgtgtggtgctggtgggctgagagcgtgtgggcctacaattgtattactttatttgttaaataaacgaaatattgttattatttattatttatctctttt 334  Q
    ||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||    
T  39685489 tgtgtggtgctggtgggctgagagtttgtgggtctacaattgtattactttatttgttaaataaatcaaatattgttattatttattatttatctttttt 39685588  T
Q  335 gggtgttaatctttcaattcttatagaacattatctaataatttgaagttcgaccggaagttaaataaagatagaaaaaatcatttcatctaaaattaaa 434  Q
     ||||||||||||||  ||| ||||  |||||||| ||| ||||||||||||| ||||||||||||||| ||||||||||| ||||||  ||||||||||    
T  39685589 tggtgttaatctttcggttcctatacgacattatcaaat-atttgaagttcgatcggaagttaaataaaaatagaaaaaattatttcacttaaaattaaa 39685687  T
Q  435 cttgagataactaaatatatattattag-gagtagctaaatataaaaatatacctactcgct 495  Q
    |||| | || |||||||||||||||||| |  ||||||||||||||||||||||||||||||    
T  39685688 cttggggtagctaaatatatattattagaggatagctaaatataaaaatatacctactcgct 39685749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 75 - 221
Target Start/End: Original strand, 41640068 - 41640214
Alignment:
Q  75 gtcttttcaaatgtaagtaaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatg 174  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  41640068 gtcttttcaaatgtaaataaatatgttatttgcaagaaactcattgtacatttaatttgtctatgactattttcttgatcatttttattgttgaaaaagg 41640167  T
Q  175 tttctttattgttgttattgagacgggaagtatcaaaccaatacaaa 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  41640168 tttctttattgttgttattgagacgggaagtatcaaaccaatacaaa 41640214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 558 - 731
Target Start/End: Original strand, 13650617 - 13650778
Alignment:
Q  558 aatagagtgaacaaagcatattgttgttctccaaatacattgcatgcatatgcaaggatcttgttaattacatcggttaattatatttctttttagtatg 657  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13650617 aatagagtgaacaaagcatattgttgttctccaaatacattgcatgcata--caaggatcttgttaattacatcggttaattatatttctttttagtatg 13650714  T
Q  658 ttgttgatagtattgctataaattttctgtcattttctgaaagtcttgaaaccaaaatgcttctgctggttagt 731  Q
    |||||||||||||| ||||||          ||||||||| |||||||||||||||||||||||||||||||||    
T  13650715 ttgttgatagtatttctataa----------attttctgatagtcttgaaaccaaaatgcttctgctggttagt 13650778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 75 - 187
Target Start/End: Complemental strand, 34034169 - 34034057
Alignment:
Q  75 gtcttttcaaatgtaagtaaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatg 174  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||| |    
T  34034169 gtcttttcaaatgtaaataaataagttatttgcaagaaactcattgtccatttaatttgtctatgactattctcttgataatttttattgttgaaaaagg 34034070  T
Q  175 tttctttattgtt 187  Q
    ||| | |||||||    
T  34034069 tttttgtattgtt 34034057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 561 - 657
Target Start/End: Original strand, 41884242 - 41884338
Alignment:
Q  561 agagtgaacaaagcatattgttgttctccaaatacattgcatgcatatgcaaggatcttgttaattacatcggttaattatatttctttttagtatg 657  Q
    |||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  41884242 agagtgaacaaaccatattgttctcctccaaatacattgcatgcatatgcaaggatcttgttaattacatcggttaattatattccttttgagtatg 41884338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 78 - 187
Target Start/End: Original strand, 17695913 - 17696022
Alignment:
Q  78 ttttcaaatgtaagtaaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatgttt 177  Q
    ||||||||||||| |||||| ||||||||||||||||||| ||| |||||| |||||| ||||||||||||||||| |||||||||||||||||| ||||    
T  17695913 ttttcaaatgtaaataaataagttatttgcaagaaactcactgtccatttagtttgtcaatgactattgtcttgataatttttattgttgaaaaaagttt 17696012  T
Q  178 ctttattgtt 187  Q
    || |||||||    
T  17696013 ctctattgtt 17696022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 84 - 223
Target Start/End: Original strand, 16908664 - 16908801
Alignment:
Q  84 aatgtaagtaaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatgtttctttat 183  Q
    |||||||  |||||||||| ||| |||||||| ||||| |||||||||| | ||| ||||||||||| || |||||||| |||||||| | ||||| |||    
T  16908664 aatgtaaacaaataggttacttgaaagaaact-attgtccatttaatttatttataactattgtcttaataatttttatcgttgaaaagt-tttctctat 16908761  T
Q  184 tgttgttattgagacgggaagtatcaaaccaatacaaaca 223  Q
      ||||||||||||| |||||||||||||||||| |||||    
T  16908762 aattgttattgagaccggaagtatcaaaccaatataaaca 16908801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 17695751 - 17695810
Alignment:
Q  16 tttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaattttag 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17695751 tttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaatcttag 17695810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 41639912 - 41639973
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaattttag 75  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41639912 gtgtttttagtcttgaatt-aatctctaacaaaaaattaaggactaaaattaacaaattttag 41639973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 34034331 - 34034269
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaattttag 75  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||    
T  34034331 gtgtttttagtcttgaatttaatctctaacaaaaaattaaatactaaaattaacaaatcttag 34034269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 514 - 555
Target Start/End: Complemental strand, 13517213 - 13517172
Alignment:
Q  514 gggtagcaagggctacccctcccttgtactaccatccgcccc 555  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  13517213 gggtagcaagggctacccctcccttgtactaccatccgcccc 13517172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 586 - 658
Target Start/End: Original strand, 41903040 - 41903112
Alignment:
Q  586 ctccaaatacattgcatgcatatgcaaggatcttgttaattacatcggttaattatatttctttttagtatgt 658  Q
    |||||| ||||||| ||||||||||||||||||||| ||||||||    |||||||||||||||| |||||||    
T  41903040 ctccaattacattggatgcatatgcaaggatcttgtaaattacattacgtaattatatttcttttgagtatgt 41903112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 514 - 557
Target Start/End: Original strand, 39685772 - 39685815
Alignment:
Q  514 gggtagcaagggctacccctcccttgtactaccatccgcccctg 557  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  39685772 gggtagcaagggctacccctcccttgttctaccatccgcccctg 39685815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 166
Target Start/End: Original strand, 19948876 - 19948942
Alignment:
Q  100 ttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgtt 166  Q
    |||||||||||||| ||||||| ||||||||  || |||||||||||||||||| ||||| ||||||    
T  19948876 ttatttgcaagaaattcattgtccatttaataggtttatgactattgtcttgataattttaattgtt 19948942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 409 - 491
Target Start/End: Complemental strand, 39570913 - 39570831
Alignment:
Q  409 aaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctact 491  Q
    ||||||| ||| || |||||||  |||||| | || | ||||||||||||||||| ||||||||| |||||||||||||||||    
T  39570913 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacctact 39570831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 16908361 - 16908410
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaat 62  Q
    ||||||||||| ||| ||||||||| ||||||||||||||||||||||||    
T  16908361 gtgtttttagttttgtatttaatctataacaaaaaattaaggactaaaat 16908410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 447 - 491
Target Start/End: Complemental strand, 6735955 - 6735911
Alignment:
Q  447 aaatatatattattaggagtagctaaatataaaaatatacctact 491  Q
    ||||||||||||||||  |||||||||||||||||||||||||||    
T  6735955 aaatatatattattagaggtagctaaatataaaaatatacctact 6735911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 14522004 - 14521946
Alignment:
Q  13 gtgtttttagtcttgaatttaatctc--taacaaaaaattaaggactaaaattaacaaa 69  Q
    ||||||||||||||| ||||||||||  |||||| ||||||||||||||||| ||||||    
T  14522004 gtgtttttagtcttgcatttaatctctataacaataaattaaggactaaaataaacaaa 14521946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 417 - 469
Target Start/End: Complemental strand, 13734668 - 13734616
Alignment:
Q  417 atttcatctaaaattaaacttgagataactaaatatatattattaggagtagc 469  Q
    |||||||||||||| ||||||  |||||| ||||||||||||||||| |||||    
T  13734668 atttcatctaaaatcaaacttaggataaccaaatatatattattaggggtagc 13734616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 447 - 491
Target Start/End: Complemental strand, 21360948 - 21360904
Alignment:
Q  447 aaatatatattattaggagtagctaaatataaaaatatacctact 491  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||||    
T  21360948 aaatatatattattaggggtagccaaatataataatatacctact 21360904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 22099273 - 22099227
Alignment:
Q  125 tttaatttgtctatgactattgtcttgatcatttttattgttgaaaa 171  Q
    |||||||||  |||||||||||||||||| | |||||||||||||||    
T  22099273 tttaatttgattatgactattgtcttgataacttttattgttgaaaa 22099227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 680 - 725
Target Start/End: Original strand, 41884387 - 41884431
Alignment:
Q  680 ttttctgtcattttctgaaagtcttgaaaccaaaatgcttctgctg 725  Q
    ||||||||||||||||||||||| ||||||||||||| || |||||    
T  41884387 ttttctgtcattttctgaaagtc-tgaaaccaaaatgtttatgctg 41884431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 491
Target Start/End: Original strand, 42092340 - 42092377
Alignment:
Q  454 tattattaggagtagctaaatataaaaatatacctact 491  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  42092340 tattattaggggtagctaaacataaaaatatacctact 42092377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 444; Significance: 0; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 13 - 557
Target Start/End: Original strand, 21441531 - 21442077
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaattttagtcttttcaaatgtaagtaaataggttatttgcaagaa 112  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  21441531 gtgtttttagtcctgaatttaatctctaacaaaaaattaaggactaaaattaacaaatcttagtcttttcaaatgtaaataaataggttatttgcaagaa 21441630  T
Q  113 actcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatgtttctttattgttgttattgagacgggaagtatcaaac 212  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  21441631 actcattgtacatttaatttgtctatgactattgttttgatcatttttattgttgaaaaaggtttctttattgttgttattgagacgggaagtatcaaac 21441730  T
Q  213 caatacaaacatagctataaagtgtgtggtgctggtgggctgagagcgtgtgggcctacaattgtattactttatttgttaaataaacgaaatattgtta 312  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21441731 caatacaaacatagctataaagtgtgtggtgctagtgggctgagagcgtgtgggtctacaattgtattactttatttgttaaataaacgaaatattgtta 21441830  T
Q  313 ttatttattatttatctcttttgggtgttaatctttcaattcttatagaacattatctaataatttgaagttcgaccggaagttaaataaagatagaaaa 412  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  21441831 ttatttattatttatctcttttggatgttaatctttcgattcttatacaacattatcaaataatttgaagttcgaccggaagttaaataaagatagaaaa 21441930  T
Q  413 aatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctactcgctaagaaaaata--nnnnn 510  Q
    ||| |||||||||||||||||||||| | || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||           
T  21441931 aattatttcatctaaaattaaacttggggtagctaaatatatattattaggggtagctaaatataaaaatatacctactcgctaagaaaaatattttttt 21442030  T
Q  511 nnngggtagcaagggctacccctcccttgtactaccatccgcccctg 557  Q
       ||||||||||||||||||||||||||||||||||||||| ||||    
T  21442031 ttggggtagcaagggctacccctcccttgtactaccatccgctcctg 21442077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 14 - 557
Target Start/End: Original strand, 41323120 - 41323665
Alignment:
Q  14 tgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaattttagtcttttcaaatgtaagtaaataggttatttgcaagaaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  41323120 tgtttttagtcttgaatttaatctctaacaaaaaattaaggattaaaattaacaaattttagtcttttcaaatgtaaataaatagtttatttgcaagaaa 41323219  T
Q  114 ctcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatgtttctttattgttgttattgagacgggaagtatcaaacc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41323220 ctcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatgtttctttattgttgttattgagacgggaagtatcaaacc 41323319  T
Q  214 aatacaaacatagctataaagtgtgtggtgctggtgggctgagagcgtgtgggcctacaattgtattactttatttgttaaataaacgaaatattgttat 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  41323320 aatacaaacatagctataaagtgtgtggtgctggtgggctgagagtgtgtggacctacaattgtattactttatttgttaaataaacaaaatattgttat 41323419  T
Q  314 tatttattatttatctcttttgggtgttaatctttcaattcttatagaacattatctaataatttgaagttcgaccggaagttaaataaagatagaaaaa 413  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  41323420 tatttattatttatctcttttgggtgttaatctttcgattcttatacaacattatcaaataatttgaagttcgaccggaaattaaataaagatagaaaaa 41323519  T
Q  414 atcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctactcgctaagaaaaata--nnnnnn 511  Q
    || |||||||||||||||||||||| | || |||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||            
T  41323520 attatttcatctaaaattaaacttggggtagctaattatatattattaggggtagctaaatataaaaatatacctactcgctcagaaaaatatttttttt 41323619  T
Q  512 nngggtagcaagggctacccctcccttgtactaccatccgcccctg 557  Q
      ||||||||||||||||||||||||||||||||||||||||||||    
T  41323620 ttgggtagcaagggctacccctcccttgtactaccatccgcccctg 41323665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 13 - 557
Target Start/End: Original strand, 4072165 - 4072711
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaattttagtcttttcaaatgtaagtaaataggttatttgcaagaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4072165 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggattaaaattaacaaattttagtcttttcaaatgtaaataaataggttatttgcaagaa 4072264  T
Q  113 actcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatgtttctttattgttgttattgagacgggaagtatcaaac 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||    
T  4072265 actcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaagttttctttattgttgttattgagacggaaagtatcaaac 4072364  T
Q  213 caatacaaacatagctataaagtgtgtggtgctggtgggctgagagcgtgtgggcctacaattgtattactttatttgttaaataaacgaaatattgtta 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  4072365 caatacaaacatagctataaagtgtgtggtgctggtgggctgagagtgtgtgggcctacaattgtattactttatttgttaaataaataaaatattgtta 4072464  T
Q  313 ttatttattatttatctcttttgggtgttaatctttcaattcttatagaacattatctaataatttgaagttcgaccggaagttaaataaagatagaaaa 412  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||| |||| |||||||||||||||||||||    
T  4072465 ttatttattatttatctcttttgggtgttaatctttcgattcttatacaacattatcaaataatttgaagttctaccgtaagttaaataaagatagaaaa 4072564  T
Q  413 aatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctactcgctaagaaaaata--nnnnn 510  Q
    ||| |||||||||||||||||||||| | || |||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |           
T  4072565 aattatttcatctaaaattaaacttggggtagctaattatatattattaggggtagctaaatataaaaatatacctactcgctcagaaaaaaaataattt 4072664  T
Q  511 nnngggtagcaagggctacccctcccttgtactaccatccgcccctg 557  Q
       ||||||||||||||||||||||||||||||||||||||||||||    
T  4072665 ttggggtagcaagggctacccctcccttgtactaccatccgcccctg 4072711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 268 - 505
Target Start/End: Complemental strand, 18606241 - 18606004
Alignment:
Q  268 ctacaattgtattactttatttgttaaataaacgaaatattgttattatttattatttatctcttttgggtgttaatctttcaattcttatagaacatta 367  Q
    ||||||||| || | |||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||| ||||||   || | ||  |||| |    
T  18606241 ctacaattgaatcattttatttgttaaataaagcaaagattgttattatttattatttatctcttttgggtgttattctttcggatcatgtacgacatga 18606142  T
Q  368 tctaataatttgaagttcgaccggaagttaaataaagatagaaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagta 467  Q
    |  |||||||| ||||| ||||||||||||||||||||| |||||||| ||||||  |||||| ||||||| | || | ||||||||||||||||| |||    
T  18606141 ttgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattatttcacttaaaataaaacttggggtagccaaatatatattattaggggta 18606042  T
Q  468 gctaaatataaaaatatacctactcgctaagaaaaata 505  Q
    |||||||||||||||||||||||||||| | |||||||    
T  18606041 gctaaatataaaaatatacctactcgctcaaaaaaata 18606004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 76 - 221
Target Start/End: Original strand, 13541435 - 13541580
Alignment:
Q  76 tcttttcaaatgtaagtaaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatgt 175  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||  |    
T  13541435 tcttttcaaatgtaaataaataggttatttgcaagaaactcattgtccatttaatttatctatgactattgtcttgataatttttattgttgaaaaagat 13541534  T
Q  176 ttctttattgttgttattgagacgggaagtatcaaaccaatacaaa 221  Q
    |||| ||||||||||||| |||| | ||||||||||||||||||||    
T  13541535 ttctctattgttgttattaagaccgaaagtatcaaaccaatacaaa 13541580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 76 - 221
Target Start/End: Complemental strand, 13683038 - 13682893
Alignment:
Q  76 tcttttcaaatgtaagtaaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatgt 175  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||  |    
T  13683038 tcttttcaaatgtaaataaataggttatttgcaagaaactcattgtccatttaatttatctatgactattgtcttgataatttttattgttgaaaaagat 13682939  T
Q  176 ttctttattgttgttattgagacgggaagtatcaaaccaatacaaa 221  Q
    |||| ||||||||||||| |||| | ||||||||||||||||||||    
T  13682938 ttctctattgttgttattaagaccgaaagtatcaaaccaatacaaa 13682893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 75 - 221
Target Start/End: Original strand, 38699764 - 38699910
Alignment:
Q  75 gtcttttcaaatgtaagtaaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatg 174  Q
    |||||||||||||||| |||||||||||||||||||||||||| | | ||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  38699764 gtcttttcaaatgtaaataaataggttatttgcaagaaactcactctccatttaatttgtccatgactattgtcttgataatttttattgttgaaaaatg 38699863  T
Q  175 tttctttattgttgttattgagacgggaagtatcaaaccaatacaaa 221  Q
    ||||| || ||||||||||||||  |  |||||||||| ||||||||    
T  38699864 tttctctactgttgttattgagatcgagagtatcaaacaaatacaaa 38699910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 78 - 221
Target Start/End: Complemental strand, 43115284 - 43115142
Alignment:
Q  78 ttttcaaatgtaagtaaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatgttt 177  Q
    ||||||||||||| |||||| ||||||||||||||||||| ||| |||||| ||| || ||||||||||||||||| |||||||||||||||||| | ||    
T  43115284 ttttcaaatgtaaataaatatgttatttgcaagaaactcactgtccatttagtttttcaatgactattgtcttgataatttttattgttgaaaaaag-tt 43115186  T
Q  178 ctttattgttgttattgagacgggaagtatcaaaccaatacaaa 221  Q
    || |||||||||||||||||  || |||||||||| ||||||||    
T  43115185 ctctattgttgttattgagatcgggagtatcaaacaaatacaaa 43115142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 94 - 217
Target Start/End: Original strand, 38172825 - 38172948
Alignment:
Q  94 aataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatgtttctttattgttgttatt 193  Q
    |||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||| |||  ||||| |||  ||||||||    
T  38172825 aataggttatttgcaataaactcattgttcatttaatttgtttatgactattgtcttgataatttttattgttgacaaagttttctctataattgttatt 38172924  T
Q  194 gagacgggaagtatcaaaccaata 217  Q
     |||| | ||||||||||||||||    
T  38172925 aagactgaaagtatcaaaccaata 38172948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 94 - 217
Target Start/End: Complemental strand, 40118189 - 40118068
Alignment:
Q  94 aataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatgtttctttattgttgttatt 193  Q
    ||||| |||||||||| ||| ||||||| |||||||||||| |||||||||| ||||||| ||||||||||||||||||  ||||  |||  ||||||||    
T  40118189 aatagattatttgcaataaattcattgtccatttaatttgtttatgactattatcttgataatttttattgttgaaaaagttttc--tataattgttatt 40118092  T
Q  194 gagacgggaagtatcaaaccaata 217  Q
    ||    ||||||||||||||||||    
T  40118091 gaatttggaagtatcaaaccaata 40118068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 38699605 - 38699664
Alignment:
Q  16 tttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaattttag 75  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  38699605 tttttagtcttgaatttaatctttaacaaaaaattaaggactaaaattaacaaatcttag 38699664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 267 - 347
Target Start/End: Complemental strand, 2811397 - 2811316
Alignment:
Q  267 cctacaattgtattactttatttgttaaataaa-cgaaatattgttattatttattatttatctcttttgggtgttaatctt 347  Q
    ||||| |||| |||| ||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||| ||||    
T  2811397 cctacgattgaattattttatttgttaaataaagcaaaagattgttattatttattatttatctcttttgggtgttattctt 2811316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 13541277 - 13541335
Alignment:
Q  17 ttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaattttag 75  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||    
T  13541277 ttttagtcttgaatttgatctttaacaaaaaattaaggactaaaattaacaaatcttag 13541335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 13683196 - 13683138
Alignment:
Q  17 ttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaattttag 75  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||    
T  13683196 ttttagtcttgaatttgatctttaacaaaaaattaaggactaaaattaacaaatcttag 13683138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 172
Target Start/End: Complemental strand, 41570487 - 41570408
Alignment:
Q  93 aaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaa 172  Q
    |||||||||||||||||||||||||||   |||||||| ||| ||||||||||  |||||| ||| ||||||||||||||    
T  41570487 aaataggttatttgcaagaaactcattactcatttaatatgtttatgactatttacttgataattgttattgttgaaaaa 41570408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 424 - 490
Target Start/End: Original strand, 33538374 - 33538440
Alignment:
Q  424 ctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctac 490  Q
    |||||||  |||| ||| |||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  33538374 ctaaaatcgaactcgaggtaaccaaatatatattattaggagtagctaaacataaaaatatacctac 33538440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 18881919 - 18881850
Alignment:
Q  78 ttttcaaatgtaagtaaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgt 147  Q
    ||||| |||||||  ||||||||||||||||||||||||||||  |||||||| ||| ||||||||||||    
T  18881919 ttttccaatgtaaacaaataggttatttgcaagaaactcattgcccatttaatatgtttatgactattgt 18881850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 33613760 - 33613707
Alignment:
Q  78 ttttcaaatgtaagtaaataggttatttgcaagaaactcattgtacatttaatt 131  Q
    ||||||||| ||| |||||||||||||||||||||||||||||| |||||||||    
T  33613760 ttttcaaatataaataaataggttatttgcaagaaactcattgtccatttaatt 33613707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 43115447 - 43115387
Alignment:
Q  16 tttttagtcttgaatttaatctctaacaa-aaaattaaggactaaaattaacaaattttag 75  Q
    |||||| |||||||||||||||||||||| ||||| |||||||||||||||||||| ||||    
T  43115447 tttttaatcttgaatttaatctctaacaaaaaaatgaaggactaaaattaacaaatcttag 43115387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 12491925 - 12491876
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaat 62  Q
    ||||||||||||||| ||||||||||||||||||||||| |||| |||||    
T  12491925 gtgtttttagtcttgtatttaatctctaacaaaaaattatggacaaaaat 12491876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 12491612 - 12491566
Alignment:
Q  93 aaataggttatttgcaagaaactcattgtacatttaatttgtctatg 139  Q
    ||||||||||||||||||||||||| ||| |||||||||||| ||||    
T  12491612 aaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 12491566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 411 - 492
Target Start/End: Complemental strand, 10713931 - 10713850
Alignment:
Q  411 aaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctactc 492  Q
    ||||| |||||| ||||||||||||||| | || | |||| |||||||| ||| |||| | |||||||||||||||| ||||    
T  10713931 aaaataatttcacctaaaattaaacttggggtagccaaatgtatattataaggggtagtttaatataaaaatataccaactc 10713850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 417 - 487
Target Start/End: Original strand, 30932146 - 30932216
Alignment:
Q  417 atttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacc 487  Q
    |||||| ||||||| ||||||| |||| | ||| |||||||||||||   |||| ||||||||||||||||    
T  30932146 atttcacctaaaatcaaacttgggatagccaaacatatattattagggacagcttaatataaaaatatacc 30932216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 6115006 - 6115091
Alignment:
Q  136 tatgactattgtcttgatcatttttattgttgaaaaatgtttctttattgttgttattgagacgggaagtatcaaaccaatacaaa 221  Q
    |||||||| |||||||||  ||||||||||| |||||  | ||| |||  ||||||||||||   |||||| ||||||||||||||    
T  6115006 tatgactactgtcttgatagtttttattgttaaaaaagttctctctataattgttattgagatcagaagtaccaaaccaatacaaa 6115091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 444; Significance: 0; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 13 - 553
Target Start/End: Complemental strand, 10620271 - 10619729
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaattttagtcttttcaaatgtaagtaaataggttatttgcaagaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||    
T  10620271 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaatcttagtcttttcaaatgtaaataaataggttattttcaagaa 10620172  T
Q  113 actcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatgtttctttattgttgttattgagacgggaagtatcaaac 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10620171 actcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaaggtttctttattgttgttattgagacgggaagtatcaaac 10620072  T
Q  213 caatacaaacatagctataaagtgtgtggtgctggtgggctgagagcgtgtgggcctacaattgtattactttatttgttaaataaacgaaatattgtta 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10620071 caatacaaacatagctataaagtgtgtggtgctggtgggctgagagcgtgtgggcctacaattgtattactttatttgttaaataaacgaaatattgtta 10619972  T
Q  313 ttatttattatttatctcttttgggtgttaatctttcaattcttatagaacattatctaataatttgaagttcgaccggaagttaaataaagatagaaaa 412  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||| |||| |||||||||||||||||||||||    
T  10619971 ttatttattatttatctcttttgggtgttaatctttcgattcttatacaacattatcaaataatttgaagtacgactggaagttaaataaagatagaaaa 10619872  T
Q  413 aatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctactcgctaagaaaaata--nnnnn 510  Q
    ||| |||||||||||||||||||||| | || ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||           
T  10619871 aattatttcatctaaaattaaacttggggtagctaaatatatattattaggggtagctaaatataaaaatatacctactcgttaaaaaaaatattttttt 10619772  T
Q  511 nnngggtagcaagggctacccctcccttgtactaccatccgcc 553  Q
       ||||||||||||||||||||||||||||||||||||||||    
T  10619771 ttggggtagcaagggctacccctcccttgtactaccatccgcc 10619729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 13 - 557
Target Start/End: Complemental strand, 15757884 - 15757340
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaattttagtcttttcaaatgtaagtaaataggttatttgcaagaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  15757884 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaatcttagtcttttcaaatgtaaataaataggttatttgcaagaa 15757785  T
Q  113 actcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatgtttctttattgttgttattgagacgggaagtatcaaac 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  15757784 actcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaaggtttctttattgttgttattgagacgggaagtatcaaac 15757685  T
Q  213 caatacaaacatagctataaagtgtgtggtgctggtgggctgagagcgtgtgggcctacaattgtattactttatttgttaaataaacgaaatattgtta 312  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15757684 caatacaaacattgctataaagtgtgtggtgctggtgggctgagagcgtgtgggcctacaattgtattactttatttgttaaataaacgaaatattgtta 15757585  T
Q  313 ttatttattatttatctcttttgggtgttaatctttcaattcttatagaacattatctaataatttgaagttcgaccggaagttaaataaagatagaaaa 412  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  15757584 ttatttattatttatctcttttgggtgttaatctttcgattcttatacaacattatcaaataatttgaagttcgatcggaagttaaataaagatagaaaa 15757485  T
Q  413 aatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctactcgctaagaaaaa-tannnnnn 511  Q
     || |||||||||||||||||||||| | ||  |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |           
T  15757484 tattatttcatctaaaattaaacttggggtagttaaatatatattattaggggtagataaatataaaaatatacctactcgctaagaaaaattttttttt 15757385  T
Q  512 nngggtagcaagggctacccctcccttgtactaccatccgcccctg 557  Q
      |||||| |||||||||||||||||||||||||||||| ||||||    
T  15757384 tggggtag-aagggctacccctcccttgtactaccatccacccctg 15757340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 76 - 221
Target Start/End: Original strand, 1600587 - 1600732
Alignment:
Q  76 tcttttcaaatgtaagtaaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatgt 175  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||  ||    
T  1600587 tcttttcaaatgtaaataaataggttatttgcaagaaactcattgtccatttaatttgtctatgactattgtcttgataatttttattgttgaaaagggt 1600686  T
Q  176 ttctttattgttgttattgagacgggaagtatcaaaccaatacaaa 221  Q
    |||| |||||||||||||||||| | ||| ||||||||||| ||||    
T  1600687 ttctctattgttgttattgagaccgaaagcatcaaaccaatgcaaa 1600732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 75 - 221
Target Start/End: Complemental strand, 44961534 - 44961388
Alignment:
Q  75 gtcttttcaaatgtaagtaaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatg 174  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||  |    
T  44961534 gtcttttcaaatgtaaataaataggttatttgcaagaaactcattgtccatttaatttgtctatgactattgtcttgataatttttactgttgaaaaggg 44961435  T
Q  175 tttctttattgttgttattgagacgggaagtatcaaaccaatacaaa 221  Q
    ||||| |||||||||||||||||| | ||| |||||| |||| ||||    
T  44961434 tttctctattgttgttattgagaccgaaagcatcaaatcaatgcaaa 44961388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 312 - 503
Target Start/End: Complemental strand, 7493576 - 7493385
Alignment:
Q  312 attatttattatttatctcttttgggtgttaatctttcaattcttatagaacattatctaataatttgaagttcgaccggaagttaaataaagatagaaa 411  Q
    ||||||||||||||||||||||||||||||| |||| |  ||| ||||  |||| ||  |||||||||||||||||||| ||| ||||||||||| ||||    
T  7493576 attatttattatttatctcttttgggtgttagtcttccggttcctatacgacatgattaaataatttgaagttcgaccgaaagctaaataaagatggaaa 7493477  T
Q  412 aaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctactcgctaagaaaaa 503  Q
    |||| ||||||  |||||| ||||||| | || | |||||||||||||| |  ||||||||||||||||||||||||||||||||| |||||    
T  7493476 aaattatttcacttaaaataaaacttggggtagccaaatatatattattggaggtagctaaatataaaaatatacctactcgctaaaaaaaa 7493385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 75 - 221
Target Start/End: Complemental strand, 11142756 - 11142610
Alignment:
Q  75 gtcttttcaaatgtaagtaaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatg 174  Q
    |||||||||||||||| | ||||||||||| |||||||||||||||| |||||||||||||||| | |||||||||||| |||||||||||||||||| |    
T  11142756 gtcttttcaaatgtaaatgaataggttattcgcaagaaactcattgtccatttaatttgtctataaatattgtcttgataatttttattgttgaaaaagg 11142657  T
Q  175 tttctttattgttgttattgagacgggaagtatcaaaccaatacaaa 221  Q
     |||| ||||||||||||| |||  || |||||||||||||||||||    
T  11142656 cttctctattgttgttatttagatcgggagtatcaaaccaatacaaa 11142610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 77 - 221
Target Start/End: Complemental strand, 23614713 - 23614569
Alignment:
Q  77 cttttcaaatgtaagtaaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatgtt 176  Q
    ||||| |||||||| |||||| |||||||||||||||||||||||   ||||||||||||| ||||||||||||| | |||||| ||||||||||| |||    
T  23614713 ctttttaaatgtaaataaatatgttatttgcaagaaactcattgtctgtttaatttgtctacgactattgtcttgttaatttttgttgttgaaaaaggtt 23614614  T
Q  177 tctttattgttgttattgagacgggaagtatcaaaccaatacaaa 221  Q
    |||||||||||||||||||||| | || |||||||||||||||||    
T  23614613 tctttattgttgttattgagaccgaaaatatcaaaccaatacaaa 23614569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 78 - 221
Target Start/End: Complemental strand, 10177978 - 10177835
Alignment:
Q  78 ttttcaaatgtaagtaaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatgttt 177  Q
    ||||||||||| | ||||||||||||||||||||||||||  || |||||| |||||| ||||||||||||||||| |||||||||||||||||| ||||    
T  10177978 ttttcaaatgtgaataaataggttatttgcaagaaactcaccgtccatttagtttgtcaatgactattgtcttgataatttttattgttgaaaaaagttt 10177879  T
Q  178 ctttattgttgttattgagacgggaagtatcaaaccaatacaaa 221  Q
    || |||||||||||||||||  || |||||||||| ||||||||    
T  10177878 ctctattgttgttattgagatcgggagtatcaaacaaatacaaa 10177835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 75 - 221
Target Start/End: Complemental strand, 19313465 - 19313319
Alignment:
Q  75 gtcttttcaaatgtaagtaaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatg 174  Q
    |||||||||||||||| |||||| ||||||||||||||||||| | |  |||||||||||||||||||||||| ||||| |||||||||||||||||| |    
T  19313465 gtcttttcaaatgtaaataaataagttatttgcaagaaactcactatctatttaatttgtctatgactattgttttgataatttttattgttgaaaaaag 19313366  T
Q  175 tttctttattgttgttattgagacgggaagtatcaaaccaatacaaa 221  Q
    ||||| |||||||||||||||||  || |||||||||  ||||||||    
T  19313365 tttctctattgttgttattgagatcgggagtatcaaagaaatacaaa 19313319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 78 - 221
Target Start/End: Original strand, 10406191 - 10406332
Alignment:
Q  78 ttttcaaatgtaagtaaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatgttt 177  Q
    ||||| ||||||| |||||||||||||||||||||||||| ||| |||||| |||||| ||||||||||||||||| ||| |||||||||||||| ||||    
T  10406191 ttttcgaatgtaaataaataggttatttgcaagaaactcactgtccatttagtttgtcaatgactattgtcttgataattattattgttgaaaaaagttt 10406290  T
Q  178 ctttattgttgttattgagacgggaagtatcaaaccaatacaaa 221  Q
    || ||  |||||||||||||  || |||||||||| ||||||||    
T  10406291 ctcta--gttgttattgagatcgggagtatcaaacaaatacaaa 10406332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 374 - 493
Target Start/End: Original strand, 44429776 - 44429895
Alignment:
Q  374 aatttgaagttcgaccggaagttaaataaagatagaaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaa 473  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||  |||||||||| ||| | || | ||||| ||||||||||| |||||||||    
T  44429776 aatttgaagttcgaccggaagttaaataaagatagtaaaaattatttcacttaaaattaaatttggggtagccaaataaatattattaggggtagctaaa 44429875  T
Q  474 tataaaaatatacctactcg 493  Q
    ||||||||||||||||||||    
T  44429876 tataaaaatatacctactcg 44429895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 267 - 453
Target Start/End: Complemental strand, 48770592 - 48770403
Alignment:
Q  267 cctacaattgtattactttatttgttaaataaacgaaatattgttattatttatt----atttatctcttttgggtgttaatctttcaattcttatagaa 362  Q
    |||||||||| || | |||||||||||||||||  ||||||||||||||||||||    |||||||| |||||||||||| ||||||  ||| ||||  |    
T  48770592 cctacaattgaataattttatttgttaaataaaacaaatattgttattatttatttattatttatctattttgggtgttattctttcggttcctatacga 48770493  T
Q  363 cattatctaataatttgaagttcgaccggaagttaaataaagatagaaaaaatcatttcatctaaaattaaacttgagataactaaatata 453  Q
    ||| ||  ||||||||||||||||||| |||  | |||||||||||||||||| ||||||  |||||| ||||||| | || |||||||||    
T  48770492 catgattaaataatttgaagttcgacc-gaaactgaataaagatagaaaaaattatttcacttaaaataaaacttggggtagctaaatata 48770403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 11142918 - 11142861
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaat 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11142918 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaat 11142861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 23614877 - 23614820
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaat 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23614877 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaat 23614820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 10406029 - 10406088
Alignment:
Q  16 tttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaattttag 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10406029 tttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaatcttag 10406088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 1600424 - 1600478
Alignment:
Q  16 tttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaat 70  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1600424 tttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaat 1600478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 260 - 347
Target Start/End: Original strand, 33409752 - 33409839
Alignment:
Q  260 gtgtgggcctacaattgtattactttatttgttaaataaacgaaatattgttattatttattatttatctcttttgggtgttaatctt 347  Q
    |||||||||||| ||||| ||  |||||||||||||||||| ||| ||| |||||||||||||||||||| |||||| ||||||||||    
T  33409752 gtgtgggcctactattgttttgttttatttgttaaataaaccaaagattattattatttattatttatcttttttggatgttaatctt 33409839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 19313624 - 19313566
Alignment:
Q  17 ttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaattttag 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  19313624 ttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacgaatcttag 19313566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 44961696 - 44961634
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaattttag 75  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||    
T  44961696 gtgtttttagtcttgaatttaatatctaacaaaagattaaggactaaaattaacaaatcttag 44961634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 10178140 - 10178081
Alignment:
Q  17 ttttagtcttgaatttaatctctaacaa-aaaattaaggactaaaattaacaaattttag 75  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  10178140 ttttagtcttgaatttaatctctaacaaaaaaattaaggactaaaattaacaaatcttag 10178081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 409 - 491
Target Start/End: Complemental strand, 43411019 - 43410937
Alignment:
Q  409 aaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctact 491  Q
    ||||||| ||| |||||||||| ||||||  | |||| |||||||||||||||||  ||||||||||||||||||||||||||    
T  43411019 aaaaaattattacatctaaaatcaaacttagggtaaccaaatatatattattagggatagctaaatataaaaatatacctact 43410937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 409 - 491
Target Start/End: Complemental strand, 44592669 - 44592587
Alignment:
Q  409 aaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctact 491  Q
    ||||||| ||| || ||||||| ||||||| | || | ||||||||||||||||| ||||||||| |||||||||||||||||    
T  44592669 aaaaaattattacacctaaaatcaaacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacctact 44592587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 421 - 490
Target Start/End: Original strand, 50303945 - 50304014
Alignment:
Q  421 catctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctac 490  Q
    ||||||||||  ||| ||||||| | ||||||||||||||||| ||||||||| ||||||||||||||||    
T  50303945 catctaaaatcgaacctgagatagccaaatatatattattaggggtagctaaacataaaaatatacctac 50304014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 409 - 492
Target Start/End: Complemental strand, 6764568 - 6764485
Alignment:
Q  409 aaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctactc 492  Q
    ||||||| ||| |||||||||||||| ||| |||| | ||||||||||||||||  |||||| |||| |||||||||| |||||    
T  6764568 aaaaaattattccatctaaaattaaatttgggatagccaaatatatattattagcggtagcttaatacaaaaatatacatactc 6764485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 409 - 492
Target Start/End: Original strand, 39618435 - 39618518
Alignment:
Q  409 aaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctactc 492  Q
    ||||||||| | |||||||||  ||||||| | || | ||||||||||||||||| |||||| |||||||||||||||| ||||    
T  39618435 aaaaaatcaatccatctaaaagcaaacttggggtagccaaatatatattattaggggtagcttaatataaaaatataccaactc 39618518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 52111063 - 52111158
Alignment:
Q  124 atttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatgtttctttattgttgttattgagacgggaagtatcaaaccaatacaaa 221  Q
    ||||||||||| ||||| |||| || |||| |||||||||||||||| |  ||||| ||  |||||||||||||  | ||||||||||||||||||||    
T  52111063 atttaatttgtttatgattattttcatgataatttttattgttgaaatagttttctcta--gttgttattgagatcgaaagtatcaaaccaatacaaa 52111158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 30950547 - 30950596
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaat 62  Q
    ||||||||||||||| ||||||| |||||||||||||||||||| |||||    
T  30950547 gtgtttttagtcttgtatttaatttctaacaaaaaattaaggacaaaaat 30950596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 447 - 491
Target Start/End: Complemental strand, 27773597 - 27773553
Alignment:
Q  447 aaatatatattattaggagtagctaaatataaaaatatacctact 491  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||    
T  27773597 aaatatatattattaggggtagctaaacataaaaatatacctact 27773553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 447 - 490
Target Start/End: Complemental strand, 50099649 - 50099606
Alignment:
Q  447 aaatatatattattaggagtagctaaatataaaaatatacctac 490  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||    
T  50099649 aaatatatattattaggggtagctaaacataaaaatatacctac 50099606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 30950860 - 30950906
Alignment:
Q  93 aaataggttatttgcaagaaactcattgtacatttaatttgtctatg 139  Q
    ||||||||||||||||||||||||| ||| |||||||||||| ||||    
T  30950860 aaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 30950906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 217
Target Start/End: Original strand, 33241370 - 33241450
Alignment:
Q  136 tatgactattgtcttgatcatttttattgttgaaaaatgtttctttattgttgttattgagacgggaagtatcaaaccaata 217  Q
    |||||||||||||||||| ||||||||||||||||| | ||||| |||  ||||| |||||||   |||||||||| |||||    
T  33241370 tatgactattgtcttgataatttttattgttgaaaagt-tttctctataattgttgttgagactaaaagtatcaaatcaata 33241450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 424 - 489
Target Start/End: Original strand, 36156967 - 36157032
Alignment:
Q  424 ctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatataccta 489  Q
    |||||||| |||||| | || | ||||||||||||||||| ||||||||  |||||||||||||||    
T  36156967 ctaaaattgaacttggggtagccaaatatatattattaggggtagctaagcataaaaatataccta 36157032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 221
Target Start/End: Complemental strand, 47367919 - 47367798
Alignment:
Q  101 tatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcattttt-attgttgaaaaatgtttctttattgttgttattgagacg 199  Q
    ||||||||||||||||||||  | ||| || ||| ||| ||||||| |||||| |||||| |||||| |||||  ||||| ||| |||||||||| |||     
T  47367919 tatttgcaagaaactcattgcccgtttgatatgtttataactattgccttgataatttttaattgttaaaaaagttttctctatagttgttattgcgact 47367820  T
Q  200 ggaagtatcaaaccaatacaaa 221  Q
    | || || ||||||| ||||||    
T  47367819 gaaaataccaaaccattacaaa 47367798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 33240603 - 33240654
Alignment:
Q  16 tttttagtcttgaatttaatctcta--acaaaaaattaaggactaaaattaa 65  Q
    |||||||||||| ||||||| ||||  |||||||||||||||||||||||||    
T  33240603 tttttagtcttgcatttaatttctataacaaaaaattaaggactaaaattaa 33240654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 424 - 491
Target Start/End: Complemental strand, 26633062 - 26632996
Alignment:
Q  424 ctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctact 491  Q
    |||||||  |||||||| |||| ||||||||||||||| | ||| ||||| |||||||||||||||||    
T  26633062 ctaaaatcgaacttgaggtaaccaaatatatattattaag-gtaactaaacataaaaatatacctact 26632996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 514 - 557
Target Start/End: Original strand, 44429918 - 44429961
Alignment:
Q  514 gggtagcaagggctacccctcccttgtactaccatccgcccctg 557  Q
    |||||||||||||||||||| |||  ||||||||||||||||||    
T  44429918 gggtagcaagggctacccctgcctactactaccatccgcccctg 44429961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 409 - 486
Target Start/End: Complemental strand, 43022631 - 43022554
Alignment:
Q  409 aaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatac 486  Q
    ||||||| ||| ||||||||||  |||||  | || | ||||||||||||||||| |||| |||| ||||||||||||    
T  43022631 aaaaaattattacatctaaaatcgaactttgggtagccaaatatatattattaggggtagttaaacataaaaatatac 43022554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 465 - 502
Target Start/End: Complemental strand, 48770415 - 48770378
Alignment:
Q  465 gtagctaaatataaaaatatacctactcgctaagaaaa 502  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  48770415 gtagctaaatataaaaatatacctactagctaaaaaaa 48770378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 426; Significance: 0; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 13 - 557
Target Start/End: Complemental strand, 46824012 - 46823467
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaattttagtcttttcaaatgtaagtaaataggttatttgcaagaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  46824012 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggattaaaattaacaaattttagtcttttcaaatgtaaataaataggttatttgcaagaa 46823913  T
Q  113 actcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatgtttctttattgttgttattgagacgggaagtatcaaac 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  46823912 actcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaaggtttctttattgttgttattgagacggaaagtatcaaac 46823813  T
Q  213 caatacaaacatagctataaagtgtgtggtgctggtgggctgagagcgtgtgggcctacaattgtattactttatttgttaaataaacgaaatattgtta 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  46823812 caatacaaacatagctataaagtgtgtggtgctggtgggctgagagtgtgtgggcctacaattgtattactttatttgttaaataaataaaatattgtta 46823713  T
Q  313 ttatttattatttatctcttttgggtgttaatctttcaattcttatagaacattatctaataatttgaagttcgaccggaagttaaataaagatagaaaa 412  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  46823712 ttatttattatttatctcttttgggtgttaatctttcgattcttatacaacattatcaaataatttgaagttcgaccggaagttaaataaagatagaaaa 46823613  T
Q  413 aatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctactcgctaagaa-aaatannnnnn 511  Q
    ||| |||||||||||||||||||||| | || |||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||    |           
T  46823612 aattatttcatctaaaattaaacttggggtagctaattatatattattaggggtagctaaatataaaaatatacctactcgctcagaatttttttttttt 46823513  T
Q  512 nngggtagcaagggctacccctcccttgtactaccatccgcccctg 557  Q
      |||||||||||||||||||| |||||||||||||||||||||||    
T  46823512 ttgggtagcaagggctacccctgccttgtactaccatccgcccctg 46823467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 13 - 453
Target Start/End: Complemental strand, 21296140 - 21295699
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaattttagtcttttcaaatgtaagtaaataggttatttgcaagaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  21296140 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaatcttagtcttttcaaatgtaaataaataggttatttgcaagaa 21296041  T
Q  113 actcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatgtttctttattgttgttattgagacgggaagtatcaaac 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  21296040 actcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaaggtttctttattgttgttactgagacgggaagtatcaaac 21295941  T
Q  213 caatacaaacatagctataaagtgtgtggtgctggtgggctgagagcgtgtgggcctacaattgtattactttatttgttaaataaacgaaatattgtta 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21295940 caatacaaacatagctataaagtgtgtggtgctggtgggctgagagcgtgtgggcctacaattgtattactttatttgttaaataaacgaaatattgtta 21295841  T
Q  313 ttatttattatttatctcttttgggtgttaatctttcaattcttatagaacattatctaataatttgaagttcgaccggaagttaaat-aaagatagaaa 411  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  21295840 ttatttattatttatctcttttaggtgttaatctttcgattcttatacaacattatcaaataatttgaagttcgaccggaagttaaataaaagatagaaa 21295741  T
Q  412 aaatcatttcatctaaaattaaacttgagataactaaatata 453  Q
    |||| |||||||||||||||||| ||| | || |||||||||    
T  21295740 aaattatttcatctaaaattaaatttggggtagctaaatata 21295699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 75 - 557
Target Start/End: Original strand, 17652987 - 17653471
Alignment:
Q  75 gtcttttcaaatgtaagtaaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatg 174  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  17652987 gtcttttcaaatgttaataaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaagt 17653086  T
Q  175 tttctttattgttgttattgagacgggaagtatcaaaccaatacaaacatagctataaagtgtgtggtgctggtgggctgagagcgtgtgggcctacaat 274  Q
    || |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||| || |||||||||||||||    
T  17653087 ttactttattgttgttattgagatgggaagtatcaaaccaatacaaacaaagctataaagcgtgtggtgctggtgggttgaaagtgtgtgggcctacaat 17653186  T
Q  275 tgtattactttatttgttaaataaacgaaatattgttattatttattatttatctcttttgggtgttaatctttcaattcttatagaacattatctaata 374  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||| ||||||||||  ||| ||||  |||||||| ||||    
T  17653187 tgtattactttatttgttaaataaatcaaatattgttattatttattatttatctctttttggtattaatctttcggttcctatacgacattatcaaata 17653286  T
Q  375 atttgaagttcgaccggaagttaaataaagatagaaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaat 474  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||  |||||||||||||| | || ||||||||||||||||||| |||| |||||    
T  17653287 atttgaagttcgaccgaaagttaaataaagatagaaaaaattatttcacttaaaattaaacttggggtagctaaatatatattattaggggtagttaaat 17653386  T
Q  475 ataaaaatatacctactcgct--aagaaaaatannnnnnnngggtagcaagggctacccctcccttgtactaccatccgcccctg 557  Q
    ||||||||||||| |||||||  || ||| |||        ||||||||||||||||||||||||||||||||||||||||||||    
T  17653387 ataaaaatatacccactcgctcaaaaaaatatatttttttggggtagcaagggctacccctcccttgtactaccatccgcccctg 17653471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 267 - 495
Target Start/End: Complemental strand, 30342887 - 30342659
Alignment:
Q  267 cctacaattgtattactttatttgttaaataaacgaaatattgttattatttattatttatctcttttgggtgttaatctttcaattcttatagaacatt 366  Q
    |||||||||| |||| |||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||| |||| | |||| ||||  ||||     
T  30342887 cctacaattgaattattttatttgttaaataaagcaaagattgttattatttattatttatctcttttgggtgttattcttccgattcctatacgacatg 30342788  T
Q  367 atctaataatttgaagttcgaccggaagttaaataaagatagaaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagt 466  Q
    ||  |||||||||||||||||||| ||| ||||||||||| |||| ||| ||||||  |||||| ||| ||| | || ||||||||||||||||||  ||    
T  30342787 attaaataatttgaagttcgaccgaaagctaaataaagatggaaagaattatttcacttaaaataaaatttggggtagctaaatatatattattagaggt 30342688  T
Q  467 agctaaatataaaaatatacctactcgct 495  Q
    || |||| |||||||||| ||||||||||    
T  30342687 agttaaaaataaaaatatccctactcgct 30342659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 260 - 493
Target Start/End: Complemental strand, 40285866 - 40285633
Alignment:
Q  260 gtgtgggcctacaattgtattactttatttgttaaataaacgaaatattgttattatttattatttatctcttttgggtgttaatctttcaattcttata 359  Q
    ||||| |||||| ||||| ||| |||||||||||||| ||| ||| ||| |||||||||||||||||||| ||||||||||||||||| |  ||| ||||    
T  40285866 gtgtgagcctactattgtcttattttatttgttaaattaaccaaagattattattatttattatttatcttttttgggtgttaatcttccggttcctata 40285767  T
Q  360 gaacattatctaataatttgaagttcgaccggaagttaaataaagatag-aaaaaatcatttcatctaaaattaaacttgagataactaaatatatatta 458  Q
      |||| ||  |||||||||||||||||||| ||| ||||||| ||| | ||||||  ||||||  |||||| |||||||||||| ||||||||||||||    
T  40285766 tgacatgattaaataatttgaagttcgaccgaaagctaaataatgattgaaaaaaaatatttcacttaaaatcaaacttgagatagctaaatatatatta 40285667  T
Q  459 ttaggagtagctaaatataaaaatatacctactcg 493  Q
    |||||  ||||||||||| |||||||| |||||||    
T  40285666 ttagggatagctaaatat-aaaatatatctactcg 40285633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 77 - 221
Target Start/End: Complemental strand, 16152374 - 16152230
Alignment:
Q  77 cttttcaaatgtaagtaaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatgtt 176  Q
    ||||| |||||||| |||||| |||||||||||||||||||||||   ||||||||||||| ||||||||||||||| |||||| ||||||||||| |||    
T  16152374 ctttttaaatgtaaataaatatgttatttgcaagaaactcattgtctgtttaatttgtctacgactattgtcttgataatttttgttgttgaaaaaggtt 16152275  T
Q  177 tctttattgttgttattgagacgggaagtatcaaaccaatacaaa 221  Q
    |||||||||||||||||||||| | || |||||||||||||||||    
T  16152274 tctttattgttgttattgagaccgaaaatatcaaaccaatacaaa 16152230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 103 - 221
Target Start/End: Original strand, 11027911 - 11028029
Alignment:
Q  103 tttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatgtttctttattgttgttattgagacggga 202  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||| || |||||||| ||||||||||||||||||||||||| |||    
T  11027911 tttgcaagaaactcattgtacatttaatttgtccatgactattgtcttgagaatttttgtttttgaaaaaggtttctttattgttgttattgagactgga 11028010  T
Q  203 agtatcaaaccaatacaaa 221  Q
    |||||||||||||||||||    
T  11028011 agtatcaaaccaatacaaa 11028029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 465 - 558
Target Start/End: Complemental strand, 21295711 - 21295618
Alignment:
Q  465 gtagctaaatataaaaatatacctactcgctaagaaaaatannnnnnnngggtagcaagggctacccctcccttgtactaccatccgcccctga 558  Q
    |||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||    
T  21295711 gtagctaaatataaaaatatacctactcgctaagaaaaatatttttttggggtagcaagggctacccctcccttgtactaccatccgcccctga 21295618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 17652561 - 17652623
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaattttag 75  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  17652561 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggattaaaattaacaaatcttag 17652623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 8554924 - 8554867
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaat 70  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8554924 gtgtttttagtcttgaatttaatctctatcaaaaaattaaggactaaaattaacaaat 8554867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 8832848 - 8832907
Alignment:
Q  16 tttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaattttag 75  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  8832848 tttttagtcttgaatttaatctttaacaaaaaattaaggactaaaattaacaaatcttag 8832907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 409 - 492
Target Start/End: Original strand, 35238708 - 35238791
Alignment:
Q  409 aaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctactc 492  Q
    ||||||||| |||||||||||||||||||| | || | ||||||||||||||||| |||||| |||||||||||||||| ||||    
T  35238708 aaaaaatcaattcatctaaaattaaacttggggtagccaaatatatattattaggggtagcttaatataaaaatataccaactc 35238791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 371 - 557
Target Start/End: Original strand, 35734374 - 35734561
Alignment:
Q  371 aataatttgaagttcgaccggaagttaaataaagat-agaaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagc 469  Q
    |||||||| |||||||  |||||| |||||| |||| | ||||||| ||||||  |||||| ||| ||  | || ||||||| ||||||||| | ||| |    
T  35734374 aataatttcaagttcg--cggaagctaaatatagatgaaaaaaaattatttcacttaaaataaaatttagggtagctaaatacatattattaagggtaac 35734471  T
Q  470 taaatataaaaatatacctactcgctaagaaaaata--nnnnnnnngggtagcaagggctacccctcccttgtactaccatccgcccctg 557  Q
    ||||||||||||||||||||||| || |||||||||          |||||||||| |||||||||||||| ||||||||||||||||||    
T  35734472 taaatataaaaatatacctactccctcagaaaaatatttttttttggggtagcaagagctacccctcccttatactaccatccgcccctg 35734561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 16152539 - 16152481
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaacaa-aaaattaaggactaaaattaacaaat 70  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  16152539 gtgtttttagtcttgaatttaatctctaacaaaaaaattaaggactaaaattaacaaat 16152481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 409 - 491
Target Start/End: Complemental strand, 37224472 - 37224390
Alignment:
Q  409 aaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctact 491  Q
    ||||||| ||| || |||||||  |||||| |||| | ||||||||||||||||| ||||||||| |||||||||||||||||    
T  37224472 aaaaaattattacacctaaaatcgaacttgggatagccaaatatatattattaggggtagctaaacataaaaatatacctact 37224390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 3457853 - 3457896
Alignment:
Q  19 ttagtcttgaatttaatctctaacaaaaaattaaggactaaaat 62  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  3457853 ttagtcttgtatttaatctctaacaaaaaattaaggactaaaat 3457896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 409 - 492
Target Start/End: Original strand, 30500921 - 30501004
Alignment:
Q  409 aaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctactc 492  Q
    ||||||||| | |||||||||| ||||||| | || | | ||||||||||||||| |||||| |||||||||||||||| ||||    
T  30500921 aaaaaatcaatccatctaaaatcaaacttggggtagccagatatatattattaggggtagcttaatataaaaatataccaactc 30501004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 11906663 - 11906747
Alignment:
Q  136 tatgactattgtcttgatcatttttattgttgaaaaatgtttctttattgttgttattgagacgggaagtatcaaaccaatacaaa 221  Q
    ||||||||||||||||||  |||||||||||||||| | | ||| |||  ||||||||||||  ||||||| ||||||||||||||    
T  11906663 tatgactattgtcttgatagtttttattgttgaaaagt-tctctctataattgttattgagagcggaagtaccaaaccaatacaaa 11906747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 20842927 - 20842976
Alignment:
Q  14 tgtttttagtcttgaatttaatctctaac-aaaaaattaaggactaaaat 62  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  20842927 tgtttttagtcttgtatttaatctctaacaaaaaaattaaggactaaaat 20842976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 409 - 490
Target Start/End: Original strand, 22775259 - 22775340
Alignment:
Q  409 aaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctac 490  Q
    ||||||| ||| || |||||||  |||||| | || | ||||||||||||||||| ||||||||| ||||||||||||||||    
T  22775259 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 22775340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 421 - 490
Target Start/End: Original strand, 26769832 - 26769901
Alignment:
Q  421 catctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctac 490  Q
    ||||||||||  |||||| | || | ||||||||||||||||| ||||||||| ||||||||||||||||    
T  26769832 catctaaaatcgaacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 26769901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 40764171 - 40764122
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaat 62  Q
    ||||||||||||||| |||||||||||||||| ||||||||||| |||||    
T  40764171 gtgtttttagtcttgcatttaatctctaacaagaaattaaggacaaaaat 40764122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 19795914 - 19795863
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaa 65  Q
    ||||||||||||||| ||| |||||||||||| ||||||||||||||||||||    
T  19795914 gtgtttttagtcttgcatt-aatctctaacaataaattaaggactaaaattaa 19795863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 447 - 491
Target Start/End: Complemental strand, 37057568 - 37057524
Alignment:
Q  447 aaatatatattattaggagtagctaaatataaaaatatacctact 491  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||    
T  37057568 aaatatatattattaggggtagctaaacataaaaatatacctact 37057524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 11027746 - 11027801
Alignment:
Q  15 gtttttagtcttgaatttaatctctaac-aaaaaattaaggactaaaattaacaaa 69  Q
    |||||||||||| ||||||||||||||| ||||||||||||||| || ||||||||    
T  11027746 gtttttagtcttcaatttaatctctaacaaaaaaattaaggactcaagttaacaaa 11027801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 371 - 414
Target Start/End: Original strand, 35734271 - 35734314
Alignment:
Q  371 aataatttgaagttcgaccggaagttaaataaagatagaaaaaa 414  Q
    |||||||||||||||||||||||| ||||||||||| |||||||    
T  35734271 aataatttgaagttcgaccggaagctaaataaagatggaaaaaa 35734314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 40763859 - 40763813
Alignment:
Q  93 aaataggttatttgcaagaaactcattgtacatttaatttgtctatg 139  Q
    ||||||||||||||||||||||||| ||| |||||||||||| ||||    
T  40763859 aaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 40763813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 52403346 - 52403430
Alignment:
Q  136 tatgactattgtcttgatcatttttattgttgaaaaatgtttctttattgttgttattgagacgggaagtatcaaaccaatacaaa 221  Q
    ||||||||||||||||||  ||||||||||||||||| |||   ||||  ||||||||||||  ||||| | ||||||||||||||    
T  52403346 tatgactattgtcttgatagtttttattgttgaaaaa-gttctcttataattgttattgagagtggaagaaccaaaccaatacaaa 52403430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 20843220 - 20843284
Alignment:
Q  75 gtcttttcaaatgtaagtaaataggttatttgcaagaaactcattgtacatttaatttgtctatg 139  Q
    |||||||| |||||||  ||||||||||||||||||||| ||| ||| ||||||| |||| ||||    
T  20843220 gtcttttccaatgtaaacaaataggttatttgcaagaaattcaatgtccatttaaattgtttatg 20843284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 36312030 - 36312081
Alignment:
Q  13 gtgtttttagtcttgaatttaatctc--taacaaaaaattaaggactaaaat 62  Q
    ||||||||||||||| ||||||||||  |||||| |||||||||||||||||    
T  36312030 gtgtttttagtcttgcatttaatctctataacaataaattaaggactaaaat 36312081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 11906365 - 11906418
Alignment:
Q  14 tgtttttagtcttgaatttaatctcta--acaaaaaattaaggactaaaattaa 65  Q
    |||||||||||||| |||| |||| ||  |||||||||||||||||||||||||    
T  11906365 tgtttttagtcttggatttcatctttataacaaaaaattaaggactaaaattaa 11906418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 52400872 - 52400925
Alignment:
Q  14 tgtttttagtcttgaatttaatctcta--acaaaaaattaaggactaaaattaa 65  Q
    |||||||||||||| |||| |||| ||  |||||||||||||||||||||||||    
T  52400872 tgtttttagtcttggatttcatctttataacaaaaaattaaggactaaaattaa 52400925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 13 - 557
Target Start/End: Original strand, 43892459 - 43893006
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaacaaaa-aattaaggactaaaattaacaaattttagtcttttcaaatgtaagtaaataggttatttgcaaga 111  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43892459 gtgtttttagtcttgaatttaatctctaacaaaaaaattaaggactaaaattaacaaattttagtcttttcaaatgtaaataaataggttatttgcaaga 43892558  T
Q  112 aactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatgtttctttattgttgttattgagacgggaagtatcaaa 211  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  43892559 aactcattgcacatttaatttgtctatgactattgtcttgattatttttattgttgaaaaaggtttctttattgttgttattgagacgggaagtatcaaa 43892658  T
Q  212 ccaatacaaacatagctataaagtgtgtggtgctggtgggctgagagcgtgtgggcctacaattgtattactttatttgttaaataaacgaaatattgtt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  43892659 ccaatacaaacatagctataaagtgtgtggtgctggtgggctgagaatgtatgggcctacaattggattactttatttgttaaataaacaaaatattgtt 43892758  T
Q  312 attatttattatttatctcttttgggtgttaatctttcaattcttatagaacattatctaataatttgaagttcgaccggaagttaaataaagatagaaa 411  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  43892759 attatttattatttatctcttttggatgttaatctttcgattcttatacaacattatcaaataatttgaagttcgatcggaagttaaataaagatagaaa 43892858  T
Q  412 aaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctactcgctaagaaaaata--nnnn 509  Q
    |||| |||||||||||||||||||||| |  | ||||||||||||||||||| |||||||||||||||||||||| ||||| || |||||||||          
T  43892859 aaattatttcatctaaaattaaacttggggcagctaaatatatattattaggggtagctaaatataaaaatatacatactcactcagaaaaatacttttt 43892958  T
Q  510 nnnngggtagcaagggctacccctcccttgtactaccatccgcccctg 557  Q
        ||||||||||||||||||||||||||||||||||||||||||||    
T  43892959 tttggggtagcaagggctacccctcccttgtactaccatccgcccctg 43893006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 235 - 495
Target Start/End: Complemental strand, 13768784 - 13768524
Alignment:
Q  235 tgtgtggtgctggtgggctgagagcgtgtgggcctacaattgtattactttatttgttaaataaacgaaatattgttattatttattatttatctctttt 334  Q
    ||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  13768784 tgtgtggtgcttgtgggctgagagtgtgtggacctacaattgtattactttatttgttaaataaatcaaatattgttattatttattatttatctctttt 13768685  T
Q  335 gggtgttaatctttcaattcttatagaacattatctaataatttgaagttcgaccggaagttaaataaagatagaaaaaatcatttcatctaaaattaaa 434  Q
    |||||||||||||||  ||| ||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||    
T  13768684 gggtgttaatctttcggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaagatagaaaaaattatttcacttaaaattaaa 13768585  T
Q  435 cttgagataactaaatatatattattaggagtagctaaatataaaaatatacctactcgct 495  Q
    |||| | || ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13768584 cttggggtagctaaatatatattattaggggtagctaaatataaaaatatacctactcgct 13768524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 75 - 221
Target Start/End: Original strand, 8745714 - 8745860
Alignment:
Q  75 gtcttttcaaatgtaagtaaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatg 174  Q
    |||||||||||||||| ||||||||||||| | |||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||| |    
T  8745714 gtcttttcaaatgtaaataaataggttattcgtaagaaactcattgtccatttaatttgtctatgaatattgtcttgataatttttattgttgaaaaagg 8745813  T
Q  175 tttctttattgttgttattgagacgggaagtatcaaaccaatacaaa 221  Q
     |||| |||||||||||||||||  || |||||||||||||||||||    
T  8745814 cttctctattgttgttattgagatcgggagtatcaaaccaatacaaa 8745860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 77 - 221
Target Start/End: Complemental strand, 48862071 - 48861927
Alignment:
Q  77 cttttcaaatgtaagtaaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatgtt 176  Q
    ||||| |||||||| |||||| |||||||||||||||||||||||   ||||||||||||| ||||||||||||||| |||||| ||||||||||| |||    
T  48862071 ctttttaaatgtaaataaatatgttatttgcaagaaactcattgtctgtttaatttgtctacgactattgtcttgataatttttgttgttgaaaaaggtt 48861972  T
Q  177 tctttattgttgttattgagacgggaagtatcaaaccaatacaaa 221  Q
    |||||||||||||||||||||| | || |||||||||||||||||    
T  48861971 tctttattgttgttattgagaccgaaaatatcaaaccaatacaaa 48861927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 267 - 504
Target Start/End: Complemental strand, 46722100 - 46721856
Alignment:
Q  267 cctacaattgtattactttatttgttaaataaacgaaatattgttattatttattatttat-------ctcttttgggtgttaatctttcaattcttata 359  Q
    |||||||||| |||| |||||||||||||||||  ||| ||||||||||||||||||||||       ||||||||||||||| |||| |  ||| ||||    
T  46722100 cctacaattgaattattttatttgttaaataaagcaaagattgttattatttattatttattatttatctcttttgggtgttattcttccggttcctata 46722001  T
Q  360 gaacattatctaataatttgaagttcgaccggaagttaaataaagatagaaaaaatcatttcatctaaaattaaacttgagataactaaatatatattat 459  Q
      |||| ||  |||||||||||||||||||| ||| ||||||||||| |||| ||| ||||||  |||||| ||| ||| | || |||||||||||||||    
T  46722000 cgacatgattaaataatttgaagttcgaccgaaagctaaataaagatggaaagaattatttcacttaaaataaaatttggggtagctaaatatatattat 46721901  T
Q  460 taggagtagctaaatataaaaatatacctactcgctaagaaaaat 504  Q
    |||| ||||||||| |||||||||| |||||||||| | ||||||    
T  46721900 taggggtagctaaaaataaaaatatccctactcgctcaaaaaaat 46721856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 75 - 221
Target Start/End: Complemental strand, 48841248 - 48841109
Alignment:
Q  75 gtcttttcaaatgtaagtaaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatg 174  Q
    |||||||||||||||| ||||||||||||||||||||||| |||| | |||||||||||||||||||  |||||||||| |||||||||||||||||| |    
T  48841248 gtcttttcaaatgtaaataaataggttatttgcaagaaacccattatccatttaatttgtctatgac--ttgtcttgataatttttattgttgaaaaagg 48841151  T
Q  175 tttctttattgttgttattgagacgggaagtatcaaaccaatacaaa 221  Q
    ||||     | ||||||||||||  ||||||||||||||||||||||    
T  48841150 tttc-----tcttgttattgagatcggaagtatcaaaccaatacaaa 48841109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 94 - 217
Target Start/End: Complemental strand, 52628339 - 52628216
Alignment:
Q  94 aataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatgtttctttattgttgttatt 193  Q
    |||||||||||||||| ||||||||||| |||||||||| | |||||||||||||||||| |||||||||||||| |||  ||||| |||  ||||||||    
T  52628339 aataggttatttgcaataaactcattgttcatttaatttatttatgactattgtcttgataatttttattgttgacaaagttttctctataattgttatt 52628240  T
Q  194 gagacgggaagtatcaaaccaata 217  Q
     |||| | ||||||||||||||||    
T  52628239 aagactgaaagtatcaaaccaata 52628216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 94 - 217
Target Start/End: Original strand, 54165986 - 54166109
Alignment:
Q  94 aataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatgtttctttattgttgttatt 193  Q
    |||||||||||||||| ||||||||||| |||||||||| | ||||| |||||||||||| ||||||||||||||||||  ||| | |||  ||||||||    
T  54165986 aataggttatttgcaataaactcattgtccatttaatttatttatgaatattgtcttgataatttttattgttgaaaaagttttatctataattgttatt 54166085  T
Q  194 gagacgggaagtatcaaaccaata 217  Q
    || || | ||||||||||||||||    
T  54166086 gaaactgaaagtatcaaaccaata 54166109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 371 - 493
Target Start/End: Original strand, 32824561 - 32824683
Alignment:
Q  371 aataatttgaagttcgaccggaagttaaataaagatagaaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagct 470  Q
    ||||||||||||||||||||||||||||||||| ||  ||||||| ||||||  |||||| ||| ||| |||| | |||||| ||||| |||| |||| |    
T  32824561 aataatttgaagttcgaccggaagttaaataaaaatgaaaaaaattatttcacttaaaataaaatttgggatagccaaatatttattactaggggtagtt 32824660  T
Q  471 aaatataaaaatatacctactcg 493  Q
    |||||||||||||||||||||||    
T  32824661 aaatataaaaatatacctactcg 32824683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 48862235 - 48862174
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaatttta 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48862235 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaatttta 48862174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 8745553 - 8745614
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaattttag 75  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  8745553 gtgtttttagtcttgaatttaatctctaac-aaaaattaaggactaaaattaacaaatcttag 8745614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 87 - 217
Target Start/End: Complemental strand, 21790828 - 21790696
Alignment:
Q  87 gtaagtaaataggttatttgcaagaaa--ctcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatgtttctttatt 184  Q
    |||| |||||||||||||||||| |||  |||||||| ||||| |||||| ||||||||| ||||| || |||||||  ||| |||||  ||||| |||     
T  21790828 gtaaataaataggttatttgcaaaaaaaactcattgtccattttatttgtttatgactatagtcttaataatttttaccgtttaaaaagttttctctata 21790729  T
Q  185 gttgttattgagacgggaagtatcaaaccaata 217  Q
     ||| ||||||||| ||||||||||||||||||    
T  21790728 attgctattgagaccggaagtatcaaaccaata 21790696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 2407512 - 2407463
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaat 62  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2407512 gtgtttttagtcttgtatttaatctctaacaaaaaattaaggactaaaat 2407463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 409 - 490
Target Start/End: Complemental strand, 4608205 - 4608124
Alignment:
Q  409 aaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctac 490  Q
    ||||||| ||| ||||||||||  |||||||| || | ||||||||||||||||| ||||||||| ||||||||||||||||    
T  4608205 aaaaaatgattacatctaaaatcgaacttgaggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 4608124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 409 - 491
Target Start/End: Original strand, 39606296 - 39606378
Alignment:
Q  409 aaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctact 491  Q
    ||||||| ||| || |||||||  |||||||| || | ||||||||||||||||| ||||||||| |||||||||||||||||    
T  39606296 aaaaaattattgcacctaaaatcgaacttgaggtagccaaatatatattattaggggtagctaaacataaaaatatacctact 39606378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 48841398 - 48841337
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaattttag 75  Q
    |||||||||||||| ||||||||||   |||||||||||||||||||||||||||||||||||    
T  48841398 gtgtttttagtctt-aatttaatcttctacaaaaaattaaggactaaaattaacaaattttag 48841337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 17815722 - 17815777
Alignment:
Q  13 gtgtttttagtcttgaatttaatctcta--acaaaaaattaaggactaaaattaac 66  Q
    ||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||    
T  17815722 gtgtttttagtcttggatttaatctctatgacaaaaaattaaggactaaaattaac 17815777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 409 - 491
Target Start/End: Complemental strand, 27513004 - 27512922
Alignment:
Q  409 aaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctact 491  Q
    ||||||| ||| || |||||||  |||||| | || | ||||||||||||||||| ||||||||| |||||||||||||||||    
T  27513004 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacctact 27512922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 409 - 491
Target Start/End: Original strand, 32595097 - 32595179
Alignment:
Q  409 aaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctact 491  Q
    ||||||| ||| || |||||||  |||||| | || | ||||||||||||||||| ||||||||| |||||||||||||||||    
T  32595097 aaaaaattattgcacctaaaatcgaacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacctact 32595179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 22786384 - 22786336
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaat 62  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  22786384 gtgtttttagtcttgtatt-aatctctaacaaaaaattaaggactaaaat 22786336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 409 - 490
Target Start/End: Original strand, 23237516 - 23237597
Alignment:
Q  409 aaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctac 490  Q
    ||||||| ||| ||||||||||  |||||| |  | | ||||||||||||||||| ||||||||| ||||||||||||||||    
T  23237516 aaaaaattattacatctaaaatcgaacttggggcagccaaatatatattattaggggtagctaaacataaaaatatacctac 23237597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 442 - 491
Target Start/End: Original strand, 30226688 - 30226737
Alignment:
Q  442 taactaaatatatattattaggagtagctaaatataaaaatatacctact 491  Q
    |||| ||||||||||||||||||||||| |||||||| ||||||||||||    
T  30226688 taaccaaatatatattattaggagtagccaaatataataatatacctact 30226737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 6016843 - 6016907
Alignment:
Q  75 gtcttttcaaatgtaagtaaataggttatttgcaagaaactcattgtacatttaatttgtctatg 139  Q
    |||||||  |||||||  ||||||||||||||||||||||||| ||||||||||| |||| ||||    
T  6016843 gtctttttcaatgtaaacaaataggttatttgcaagaaactcaatgtacatttaaattgtttatg 6016907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 17816045 - 17816124
Alignment:
Q  140 actattgtcttgatcatttttattgttgaaaaatgtttctttattgttgttattgagacgggaagtatcaaaccaataca 219  Q
    |||| ||||||||| ||||||||||||||| ||  ||||| ||| ||||||||| |||  ||||||| ||||||||||||    
T  17816045 actactgtcttgataatttttattgttgaataagttttctctatagttgttattaagattggaagtaccaaaccaataca 17816124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 447 - 490
Target Start/End: Original strand, 18493829 - 18493872
Alignment:
Q  447 aaatatatattattaggagtagctaaatataaaaatatacctac 490  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||    
T  18493829 aaatatatattattaggggtagctaaacataaaaatatacctac 18493872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 409 - 492
Target Start/End: Complemental strand, 20618838 - 20618755
Alignment:
Q  409 aaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctactc 492  Q
    ||||||| |||  ||||||||||||| ||| | || | ||| ||||||||||||| |||||| |||| ||||||||||||||||    
T  20618838 aaaaaattattctatctaaaattaaatttggggtagccaaacatatattattaggggtagcttaatacaaaaatatacctactc 20618755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 447 - 490
Target Start/End: Original strand, 22375934 - 22375977
Alignment:
Q  447 aaatatatattattaggagtagctaaatataaaaatatacctac 490  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||    
T  22375934 aaatatatattattaggggtagctaaacataaaaatatacctac 22375977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 447 - 490
Target Start/End: Original strand, 54508607 - 54508650
Alignment:
Q  447 aaatatatattattaggagtagctaaatataaaaatatacctac 490  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||    
T  54508607 aaatatatattattaggggtagctaaacataaaaatatacctac 54508650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 6016546 - 6016596
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaac-aaaaaattaaggactaaaat 62  Q
    ||||||||||||||| | |||||||||||| ||||||||||||||||||||    
T  6016546 gtgtttttagtcttgtagttaatctctaacaaaaaaattaaggactaaaat 6016596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 447 - 492
Target Start/End: Complemental strand, 37927826 - 37927781
Alignment:
Q  447 aaatatatattattaggagtagctaaatataaaaatatacctactc 492  Q
    ||||||||||||||| | |||||||||||||||||||||| |||||    
T  37927826 aaatatatattattatgggtagctaaatataaaaatatacatactc 37927781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 22786092 - 22786028
Alignment:
Q  75 gtcttttcaaatgtaagtaaataggttatttgcaagaaactcattgtacatttaatttgtctatg 139  Q
    |||||||| |||||||  ||||||||||||||||||||| ||| ||| ||||||| |||| ||||    
T  22786092 gtcttttccaatgtaaacaaataggttatttgcaagaaattcaatgtccatttaaattgtttatg 22786028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 447 - 491
Target Start/End: Original strand, 44222983 - 44223027
Alignment:
Q  447 aaatatatattattaggagtagctaaatataaaaatatacctact 491  Q
    ||||||||||||||||| |||| |||| |||||||||||||||||    
T  44222983 aaatatatattattaggggtagttaaacataaaaatatacctact 44223027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 447 - 490
Target Start/End: Original strand, 34021344 - 34021387
Alignment:
Q  447 aaatatatattattaggagtagctaaatataaaaatatacctac 490  Q
    ||||||||| ||||||| ||||||||| ||||||||||||||||    
T  34021344 aaatatatactattaggggtagctaaacataaaaatatacctac 34021387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 11950865 - 11950815
Alignment:
Q  15 gtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaa 65  Q
    |||||| |||||| ||||||||| | ||||||||||||||| |||||||||    
T  11950865 gtttttggtcttggatttaatctttgacaaaaaattaaggattaaaattaa 11950815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 2407216 - 2407155
Alignment:
Q  78 ttttcaaatgtaagtaaataggttatttgcaagaaactcattgtacatttaatttgtctatg 139  Q
    ||||| |||||||  ||||||||||||||||||||| ||| ||| ||||||| |||| ||||    
T  2407216 ttttccaatgtaaacaaataggttatttgcaagaaattcaatgtccatttaaattgtttatg 2407155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 14 - 458
Target Start/End: Complemental strand, 39720086 - 39719643
Alignment:
Q  14 tgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaattttagtcttttcaaatgtaagtaaataggttatttgcaagaaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39720086 tgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaattttagtcttttcaaatgtaaataaataggttatttgcaagaaa 39719987  T
Q  114 ctcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatgtttctttattgttgttattgagacgggaagtatcaaacc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39719986 ctcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatgtttctttattgttgttattgagacgggaagtatcaaacc 39719887  T
Q  214 aatacaaacatagctataaagtgtgtggtgctggtgggctgagagcgtgtgggcctacaattgtattactttatttgttaaataaacgaaatattgttat 313  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  39719886 aatacaaacatagctataaa-tgtgtggtgctggtgggctgagagtgtgtgggcctacaattgtattactttatttgttaaataaacaaaatattgttat 39719788  T
Q  314 tatttattatttatctcttttgggtgttaatctttcaattcttatagaacattatctaataatttgaagttcgaccggaagttaaataaagatagaaaaa 413  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||| ||||||||||| ||||||||||||||||||||||    
T  39719787 tatttattatttatctcttttgggtgttaatctttcgattcttatacaacattatcaaataatttaaagttcgaccgaaagttaaataaagatagaaaaa 39719688  T
Q  414 atcatttcatctaaaattaaacttgagataactaaatatatatta 458  Q
    || ||||||||||||||||||| || |||| ||||||||||||||    
T  39719687 attatttcatctaaaattaaacctgggatagctaaatatatatta 39719643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 75 - 555
Target Start/End: Original strand, 46211677 - 46212157
Alignment:
Q  75 gtcttttcaaatgtaagtaaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatg 174  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  46211677 gtcttttcaaatgtaaataaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaagg 46211776  T
Q  175 tttctttattgttgttattgagacgggaagtatcaaaccaatacaaacatagctataaagtgtgtggtgctggtgggctgagagcgtgtgggcctacaat 274  Q
    ||||||||| |||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  46211777 tttctttatcgttgttattgagacggaaagtatcaaaccaa-acaaacaaagctataaagtgtgtggtgctggtgggctgagagtgtgtgggcctacaat 46211875  T
Q  275 tgtattactttatttgttaaataaacgaaatattgttattatttattatttatctcttttgggtgttaatctttcaattcttatagaacattatctaata 374  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||  |||||||| ||||    
T  46211876 tgtattactttatttgttaaataaatcaaatattgttattatttattatttatctcttttgggtgttaatctttcggttcctatacgacattatcaaata 46211975  T
Q  375 atttgaagttcgaccggaagttaaataaagatagaaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaat 474  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||  |||||||||| ||| | || |||||||||||||||||| |||||||||||    
T  46211976 atttgaagttcgaccggaagttaaataaagaaagaaaaaattatttcacttaaaattaaatttggggtagctaaatatatattattagaagtagctaaat 46212075  T
Q  475 ataaaaatatacctactcgctaagaaaaata-nnnnnnnngggtagcaagggctacccctcccttgtactaccatccgcccc 555  Q
    ||||||||||||||||||||| |||||||||         |||||||||||||||||||||||||| |||||||||||||||    
T  46212076 ataaaaatatacctactcgctcagaaaaatattttttttggggtagcaagggctacccctcccttgcactaccatccgcccc 46212157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 78 - 558
Target Start/End: Original strand, 48609108 - 48609590
Alignment:
Q  78 ttttcaaatgtaagtaaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatgttt 177  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  48609108 ttttcaaatgttaataaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaagtttt 48609207  T
Q  178 ctttattgttgttattgagacgggaagtatcaaaccaatacaaacatagctataaagtgtgtggtgctggtgggctgagagcgtgtgggcctacaattgt 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||| ||||||||||||    
T  48609208 ctttattgttgttattgagacgggaagtatcaaaccaatacaaacaaagctataaagtgtgtggtgctggtgggttgagagtgtgtgagcctacaattgt 48609307  T
Q  278 attactttatttgttaaataaacgaaatattgttattatttattatttatctcttttgggtgttaatctttcaattcttatagaacattatctaataatt 377  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||  ||| ||||  |||||||| |||||||    
T  48609308 attactttatttgttaaataaacaaaatattgttattatttattatttatctctttttggtattaatctttcggttcctatacgacattatcaaataatt 48609407  T
Q  378 tgaagttcgaccggaagttaaataaagatagaaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatata 477  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||  |||||||||||||| | || ||||||||||||||||||| |||| ||||||||    
T  48609408 tgaagttcgaccgaaagttaaataaagatagaaaaaattatttcacttaaaattaaacttggggtagctaaatatatattattaggggtagttaaatata 48609507  T
Q  478 aaaatatacctactcgctaagaaaaata--nnnnnnnngggtagcaagggctacccctcccttgtactaccatccgcccctga 558  Q
    |||||||||| ||||||| |||||||||          |||||||||||||||||||||||||||||||||||||||||||||    
T  48609508 aaaatatacccactcgctcagaaaaatatttttttttggggtagcaagggctacccctcccttgtactaccatccgcccctga 48609590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 75 - 557
Target Start/End: Complemental strand, 758975 - 758503
Alignment:
Q  75 gtcttttcaaatgtaagtaaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatg 174  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  758975 gtcttttcaaatgtaaataaatagattatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattattgaaaaagg 758876  T
Q  175 tttctttattgttgttattgagacgggaagtatcaaaccaatacaaacatagctataaagtgtgtggtgctggtgggctgagagcgtgtgggcctacaat 274  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||| |    
T  758875 tttctttatcgttgttattgagacgggaagtatcaaaccaa-acaaacaaagctataaagtgtgttgtgctggtgggctgagagtgtgtgggcctacatt 758777  T
Q  275 tgtattactttatttgttaaataaacgaaatattgttattatttattatttatctcttttgggtgttaatctttcaattcttatagaacattatctaata 374  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||  |||||||| ||||    
T  758776 tgtattactttatttgttaaataaatcaaatattgttattatttattatttatctcttttgggtgttaatctttcggttcctatatgacattatcaaata 758677  T
Q  375 atttgaagttcgaccggaagttaaataaagatagaaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaat 474  Q
    |||||||||||||||| |||           |||||||||| ||||||  |||||||||| ||| | || ||||||||||||||||| | |||| |||||    
T  758676 atttgaagttcgaccgaaag-----------tagaaaaaattatttcacttaaaattaaatttggggtagctaaatatatattattaagggtagataaat 758588  T
Q  475 ataaaaatatacctactcgctaagaaaaata--nnnnnnnngggtagcaagggctacccctcccttgtactaccatccgcccctg 557  Q
    ||||||||||||||||| ||| |||||||||          |||||||||| |||||||||||||||||||||||||||||||||    
T  758587 ataaaaatatacctacttgctcagaaaaatatttttttttggggtagcaagagctacccctcccttgtactaccatccgcccctg 758503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 75 - 557
Target Start/End: Original strand, 83631 - 84097
Alignment:
Q  75 gtcttttcaaatgtaagtaaataggttatttgcaagaaactcattgtacattt-aatttgtctatgactattgtcttgatcatttttattgttgaaaaat 173  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||     
T  83631 gtcttttcaaatgtaaataaataggttatttacaagaaactcattgtatgttttaatttgtctatgactattgtcttgatcatttttattgttgaaaaag 83730  T
Q  174 gtttctttattgttgttattgagacgggaagtatcaaaccaatacaaacatagctataaagtgtgtggtgctggtgggctgagagcgtgtgggcctacaa 273  Q
    |||||||||| ||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||              |||| ||||||||||||||    
T  83731 gtttctttatcgttgttattgagacgggaagtatcaaatcaa-acaaacaaagctataaagtgtgtg--------------agagtgtgtgggcctacaa 83815  T
Q  274 ttgtattactttatttgttaaataaacgaaatattgttattatttattatttatctcttttgggtgttaatctttcaattcttatagaacattatctaat 373  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||  |||||||| |||    
T  83816 ttgtattactttatttgttaaataaatcaaatattgttattatttattatttatctcttttgggtgttaatctttcggttcctatacgacattatcaaat 83915  T
Q  374 aatttgaagttcgaccggaagttaaataaagatagaaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaa 473  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||  |||||||||| ||| | |||||||||||||||||||||| |||||||||    
T  83916 aatttgaagttcgaccggaagttaaataaagatagaaaaatttatttcacttaaaattaaatttggggtaactaaatatatattattaggggtagctaaa 84015  T
Q  474 tataaaaatatacctactcgctaagaaaaata--nnnnnnnngggtagcaagggctacccctcccttgtactaccatccgcccctg 557  Q
    |||||||||||||||||||||| | |||||||          ||||||||||||||||    ||||||||||||||||||||||||    
T  84016 tataaaaatatacctactcgcttaaaaaaatatttttttttggggtagcaagggctac----cccttgtactaccatccgcccctg 84097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 312 - 503
Target Start/End: Original strand, 45809876 - 45810067
Alignment:
Q  312 attatttattatttatctcttttgggtgttaatctttcaattcttatagaacattatctaataatttgaagttcgaccggaagttaaataaagatagaaa 411  Q
    ||||||||||||||||||||||||||||||| |||| |  ||| ||||  |||| ||  |||||||||||||||||||||||| ||||||||||| ||||    
T  45809876 attatttattatttatctcttttgggtgttagtcttccggttcctatacgacatgattaaataatttgaagttcgaccggaagctaaataaagatggaaa 45809975  T
Q  412 aaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctactcgctaagaaaaa 503  Q
    |||| ||||||  |||||| ||||||| | || | |||||||||||||| || ||||||||||||||||||||||||||||||||| |||||    
T  45809976 aaattatttcacttaaaataaaacttggggtagccaaatatatattattgggggtagctaaatataaaaatatacctactcgctaaaaaaaa 45810067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 75 - 197
Target Start/End: Original strand, 29715845 - 29715967
Alignment:
Q  75 gtcttttcaaatgtaagtaaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatg 174  Q
    |||||||||||||||| |||||||||||||| |||||||||||  || ||||||||||||||||||||||||||||||| |||||||||||||||||| |    
T  29715845 gtcttttcaaatgtaaataaataggttatttacaagaaactcaccgtccatttaatttgtctatgactattgtcttgataatttttattgttgaaaaaag 29715944  T
Q  175 tttctttattgttgttattgaga 197  Q
    ||| | |||||||||||||||||    
T  29715945 tttttctattgttgttattgaga 29715967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 371 - 557
Target Start/End: Complemental strand, 2826867 - 2826678
Alignment:
Q  371 aataatttgaagttcgaccggaagttaaataaagatagaaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagct 470  Q
    ||||||||||| || ||||||||| ||| |||||||||||||||| ||||||  || |||||||||||   || ||||||||||||||||||   |||||    
T  2826867 aataatttgaattttgaccggaaggtaattaaagatagaaaaaattatttcacttacaattaaacttggagtagctaaatatatattattagagatagct 2826768  T
Q  471 aaatataaaaatatacctactcgct---aagaaaaatannnnnnnngggtagcaagggctacccctcccttgtactaccatccgcccctg 557  Q
    ||||||||||||||||||| |||||   || ||||| |        ||||||||||||||||||||||||| ||| ||||||| ||||||    
T  2826767 aaatataaaaatatacctaatcgctcaaaaaaaaaaaaaattttgggggtagcaagggctacccctcccttatacaaccatccacccctg 2826678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 48608682 - 48608744
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaattttag 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  48608682 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaatcttag 48608744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 83202 - 83261
Alignment:
Q  16 tttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaattttag 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  83202 tttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaatcttag 83261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 759402 - 759343
Alignment:
Q  16 tttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaattttag 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  759402 tttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaatcttag 759343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 46211387 - 46211446
Alignment:
Q  16 tttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaattttag 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  46211387 tttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaatcttag 46211446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 94 - 171
Target Start/End: Complemental strand, 34659439 - 34659362
Alignment:
Q  94 aataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaa 171  Q
    |||| ||||||||||| ||||||||| | |||||||||||| |||||||||||||||||| |||||||||||||||||    
T  34659439 aataagttatttgcaataaactcattatccatttaatttgtttatgactattgtcttgataatttttattgttgaaaa 34659362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 29715686 - 29715745
Alignment:
Q  16 tttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaattttag 75  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  29715686 tttttagtcttgaatttaatctttaacaaaaaattaaggactaaaattaacaaatcttag 29715745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 235 - 299
Target Start/End: Complemental strand, 2826935 - 2826871
Alignment:
Q  235 tgtgtggtgctggtgggctgagagcgtgtgggcctacaattgtattactttatttgttaaataaa 299  Q
    ||||||||||||||||| |||||| |||| ||||||||||||||||| |||||||||||||||||    
T  2826935 tgtgtggtgctggtgggttgagagtgtgtaggcctacaattgtattattttatttgttaaataaa 2826871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 93 - 217
Target Start/End: Complemental strand, 37202869 - 37202745
Alignment:
Q  93 aaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatgtttctttattgttgttat 192  Q
    |||||| |||||||||||||||| | ||| |||||||||||| ||||||||||||||| || | ||||| ||||||||||  ||||   ||  || ||||    
T  37202869 aaatagattatttgcaagaaactgaatgtccatttaatttgtttatgactattgtcttaataacttttaatgttgaaaaaattttcaccataattattat 37202770  T
Q  193 tgagacgggaagtatcaaaccaata 217  Q
    |||||   |||||||||||||||||    
T  37202769 tgagagcagaagtatcaaaccaata 37202745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 13465817 - 13465768
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaat 62  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  13465817 gtgtttttagtcttgtatttaatctctaacaaaaaattaaggacaaaaat 13465768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 25439331 - 25439380
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaat 62  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  25439331 gtgtttttagtcttgtatttaatctctaacaaaaaattaaggacaaaaat 25439380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 446 - 503
Target Start/End: Original strand, 33335995 - 33336052
Alignment:
Q  446 taaatatatattattaggagtagctaaatataaaaatatacctactcgctaagaaaaa 503  Q
    |||||||||||||||||| ||||||||||||||| |||||||||| |||||| |||||    
T  33335995 taaatatatattattaggggtagctaaatataaatatatacctacccgctaaaaaaaa 33336052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 409 - 492
Target Start/End: Complemental strand, 36558429 - 36558346
Alignment:
Q  409 aaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctactc 492  Q
    ||||||||| | |||||||||| ||||||||| || | ||||||||||||||||| |||  | |||||||||||||||| ||||    
T  36558429 aaaaaatcaatccatctaaaatcaaacttgaggtagccaaatatatattattaggggtaatttaatataaaaatataccaactc 36558346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 409 - 491
Target Start/End: Original strand, 27098887 - 27098969
Alignment:
Q  409 aaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctact 491  Q
    ||||||| ||| ||| |||||||||| ||| |||| | ||||||||||||||||| ||||||||| ||||| ||| |||||||    
T  27098887 aaaaaattattacatttaaaattaaatttgggatagccaaatatatattattaggggtagctaaacataaatataaacctact 27098969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 409 - 491
Target Start/End: Complemental strand, 27179416 - 27179334
Alignment:
Q  409 aaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctact 491  Q
    ||||||| ||| ||| |||||||||| ||| |||| | ||||||||||||||||| ||||||||| ||||| ||| |||||||    
T  27179416 aaaaaattattacatttaaaattaaatttgggatagccaaatatatattattaggggtagctaaacataaatataaacctact 27179334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 28491380 - 28491315
Alignment:
Q  75 gtcttttcaaatgtaag-taaataggttatttgcaagaaactcattgtacatttaatttgtctatg 139  Q
    |||||||| |||||||  |||||||||||||||||||||||||| ||| |||||||||||| ||||    
T  28491380 gtcttttccaatgtaaaataaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 28491315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 447 - 491
Target Start/End: Original strand, 23333341 - 23333385
Alignment:
Q  447 aaatatatattattaggagtagctaaatataaaaatatacctact 491  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||    
T  23333341 aaatatatattattaggggtagctaaacataaaaatatacctact 23333385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 447 - 491
Target Start/End: Original strand, 27571639 - 27571683
Alignment:
Q  447 aaatatatattattaggagtagctaaatataaaaatatacctact 491  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||    
T  27571639 aaatatatattattaggggtagctaaacataaaaatatacctact 27571683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 449 - 493
Target Start/End: Complemental strand, 39719352 - 39719308
Alignment:
Q  449 atatatattattaggagtagctaaatataaaaatatacctactcg 493  Q
    |||||||||||||||  ||||||||||||||||||||||||||||    
T  39719352 atatatattattagggatagctaaatataaaaatatacctactcg 39719308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 28491673 - 28491626
Alignment:
Q  15 gtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaat 62  Q
    ||||||| ||||| |||||||||||||||||||||||||||| |||||    
T  28491673 gtttttaatcttgtatttaatctctaacaaaaaattaaggacaaaaat 28491626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 235 - 277
Target Start/End: Original strand, 307183 - 307225
Alignment:
Q  235 tgtgtggtgctggtgggctgagagcgtgtgggcctacaattgt 277  Q
    ||||||||||||||||| |||||| ||||||||||||||||||    
T  307183 tgtgtggtgctggtgggttgagagtgtgtgggcctacaattgt 307225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 13465504 - 13465458
Alignment:
Q  93 aaataggttatttgcaagaaactcattgtacatttaatttgtctatg 139  Q
    ||||||||||||||||||||||||| ||| |||||||||||| ||||    
T  13465504 aaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 13465458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 447 - 492
Target Start/End: Complemental strand, 2410995 - 2410950
Alignment:
Q  447 aaatatatattattaggagtagctaaatataaaaatatacctactc 492  Q
    ||||||||||||||||| |||||| |||||||||||||||| ||||    
T  2410995 aaatatatattattaggggtagcttaatataaaaatataccaactc 2410950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 221
Target Start/End: Complemental strand, 25592160 - 25592075
Alignment:
Q  136 tatgactattgtcttgatcatttttattgttgaaaaatgtttctttattgttgttattgagacgggaagtatcaaaccaatacaaa 221  Q
    |||||||||| |||||||  |||||||||||||||||  | ||| |||  ||||||||||||  ||||||| |||| |||||||||    
T  25592160 tatgactattatcttgatagtttttattgttgaaaaagttctctctataattgttattgagagcggaagtaccaaatcaatacaaa 25592075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 20926567 - 20926618
Alignment:
Q  13 gtgtttttagtcttgaatttaatctc--taacaaaaaattaaggactaaaat 62  Q
    ||||||||||||||| ||||||||||  |||||| |||||||||||||||||    
T  20926567 gtgtttttagtcttgcatttaatctctataacaataaattaaggactaaaat 20926618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 447 - 491
Target Start/End: Complemental strand, 41532455 - 41532411
Alignment:
Q  447 aaatatatattattaggagtagctaaatataaaaatatacctact 491  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||||    
T  41532455 aaatatatattattaggggtagccaaatataataatatacctact 41532411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 411 - 477
Target Start/End: Complemental strand, 11468680 - 11468614
Alignment:
Q  411 aaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatata 477  Q
    ||||| |||||| ||||||| ||||||||| || | ||||||||||||||||  ||||| |||||||    
T  11468680 aaaattatttcaactaaaatcaaacttgaggtagccaaatatatattattagaggtagccaaatata 11468614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 25592458 - 25592405
Alignment:
Q  14 tgtttttagtcttgaatttaatctcta--acaaaaaattaaggactaaaattaa 65  Q
    |||||||||||||| |||| |||| ||  |||||||||||||||||||||||||    
T  25592458 tgtttttagtcttggatttcatctttataacaaaaaattaaggactaaaattaa 25592405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 34659693 - 34659636
Alignment:
Q  14 tgtttttagtcttgaatttaatctcta--acaaaaaattaaggactaaaattaacaaa 69  Q
    |||||||||||||| ||||||| ||||  |||||||||||| || |||||||||||||    
T  34659693 tgtttttagtcttgcatttaatttctataacaaaaaattaaagattaaaattaacaaa 34659636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 409 - 491
Target Start/End: Original strand, 38892149 - 38892230
Alignment:
Q  409 aaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctact 491  Q
    ||||||| ||| || |||||||  |||||| | |||  ||||||||||||| ||| ||||||||| |||||||||||||||||    
T  38892149 aaaaaattattacacctaaaatcgaacttggggtaatcaaatatatattatcagg-gtagctaaacataaaaatatacctact 38892230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 75 - 558
Target Start/End: Original strand, 29363545 - 29364027
Alignment:
Q  75 gtcttttcaaatgtaagtaaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatg 174  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  29363545 gtcttttcaaatgtaaataaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaagg 29363644  T
Q  175 tttctttattgttgttattgagacgggaagtatcaaaccaatacaaacatagctataaagtgtgtggtgctggtgggctgagagcgtgtgggcctacaat 274  Q
    ||||||| | |||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29363645 tttctttgtcgttgttattgagacggaaagtatcaaaccaa-acaaacaaagctataaagtgtgtggtgctggtgggctgagagtgtgtgggcctacaat 29363743  T
Q  275 tgtattactttatttgttaaataaacgaaatattgttattatttattatttatctcttttgggtgttaatctttcaattcttatagaacattatctaata 374  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||| ||||||||| ||||    
T  29363744 tgtattactttatttgttaaataaatcaaatattgttattatttattatttatctcttttgggtgttaatctttcggttcctatacaacattatcaaata 29363843  T
Q  375 atttgaagttcgaccggaagttaaataaagatagaaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaat 474  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||| ||| | || ||||||||||||||||||||||||||||||    
T  29363844 atttgaagttcgaccggaagttaaataaagatagaaaaaattatttcacttaaaattaaatttggggtagctaaatatatattattaggagtagctaaat 29363943  T
Q  475 ataaaaatatacctactcgctaagaaaaatannnnnnnngggtagcaagggctacccctcccttgtactaccatccgcccctga 558  Q
    ||||||||||||||||||||| |||||||||        |||||||||||||||||||||||||| ||||||||||||||||||    
T  29363944 ataaaaatatacctactcgctcagaaaaatatttttttggggtagcaagggctacccctcccttgcactaccatccgcccctga 29364027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 75 - 558
Target Start/End: Complemental strand, 34729921 - 34729436
Alignment:
Q  75 gtcttttcaaatgtaagtaaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatg 174  Q
    ||||||| |||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||      
T  34729921 gtctttttaaatgttaataaataggttatttgcaagaaactcattgtacatttaacttgtctatgactattgtcatgatcatttttattgttgaaaaagt 34729822  T
Q  175 tttctttattgttgttattgagacgggaagtatcaaaccaatacaaacatagctataaagtgtgtggtgctggtgggctgagagcgtgtgggcctacaat 274  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||| ||||| |||||||||    
T  34729821 tttcgttattgttgttattgagacgggaagtatcaaaccaatacaaacaaaactataaagtgtgtggtgctggtgggttgagagtgtgtgagcctacaat 34729722  T
Q  275 tgtattactttatttgttaaataaacgaaatattgttattatttattatttatctcttttgggtgttaatctttcaattcttatagaacattatctaata 374  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||| ||||||||||  ||| ||||  | |||||| ||||    
T  34729721 tgtattactttatttgttaaataaatcaaatattgttattatttattatttatctctttttggtattaatctttcggttcctatacgatattatcaaata 34729622  T
Q  375 atttgaagttcgaccggaagttaaataaagatagaaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaat 474  Q
    ||||||||||||| || |||||||||||||||||||||||| ||||||  |||||||||||||| | || ||||||||||| ||||||| ||||||||||    
T  34729621 atttgaagttcgatcgaaagttaaataaagatagaaaaaattatttcacttaaaattaaacttggggtagctaaatatatactattaggggtagctaaat 34729522  T
Q  475 ataaaaatatacctactcgctaagaaaaata--nnnnnnnngggtagcaagggctacccctcccttgtactaccatccgcccctga 558  Q
    ||||||||||||| |||| || |||||||||          ||||||||||||||||||||||||||||||||| |||||||||||    
T  34729521 ataaaaatatacccactcactcagaaaaatattttttttgggggtagcaagggctacccctcccttgtactaccgtccgcccctga 34729436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 268 - 505
Target Start/End: Original strand, 583151 - 583388
Alignment:
Q  268 ctacaattgtattactttatttgttaaataaacgaaatattgttattatttattatttatctcttttgggtgttaatctttca-attcttatagaacatt 366  Q
    ||||||||| || | |||||||||||||||||  ||| ||||||||||||| ||||||||||||||||||||||| ||||||  |||||  ||| ||||     
T  583151 ctacaattgaatcattttatttgttaaataaagcaaagattgttattatttcttatttatctcttttgggtgttattctttcggattctg-taggacatg 583249  T
Q  367 atctaataatttgaagttcgaccggaagttaaataaagatagaaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagt 466  Q
    ||  |||||||| ||||| ||||||||||||||||||||| |||||||| ||||||| |||||| ||||||| | |||| ||||||||||||||||| ||    
T  583250 attgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattatttcatttaaaataaaacttggggtaaccaaatatatattattaggggt 583349  T
Q  467 agctaaatataaaaatatacctactcgctaagaaaaata 505  Q
    ||||||||||||||||||||||||||||| | |||||||    
T  583350 agctaaatataaaaatatacctactcgctcaaaaaaata 583388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 268 - 505
Target Start/End: Complemental strand, 3886363 - 3886126
Alignment:
Q  268 ctacaattgtattactttatttgttaaataaacgaaatattgttattatttattatttatctcttttgggtgttaatctttcaattcttatagaacatta 367  Q
    ||||||||| || | |||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||| ||||||   || | ||  |||| |    
T  3886363 ctacaattgaatcattttatttgttaaataaaacaaagattgttattatttattatttatctcttttgggtgttattctttcggatcctgtacgacatga 3886264  T
Q  368 tctaataatttgaagttcgaccggaagttaaataaagatagaaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagta 467  Q
    |  |||||||| ||||| ||||||||||||||||||||| |||||||| ||||||| |||||| ||||||| | || | ||||||||||||||||| |||    
T  3886263 ttgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattatttcatttaaaataaaacttggggtagccaaatatatattattaggggta 3886164  T
Q  468 gctaaatataaaaatatacctactcgctaagaaaaata 505  Q
    |||||||||||||||||||||||||||| | |||||||    
T  3886163 gctaaatataaaaatatacctactcgctcaaaaaaata 3886126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 392 - 556
Target Start/End: Original strand, 30386778 - 30386943
Alignment:
Q  392 aagttaaataaagatagaaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctact 491  Q
    |||||||||||||||||||||||  ||||||  ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  30386778 aagttaaataaagatagaaaaaaatatttcacttaaaattaaacttgagatagctaaatatatattattaggggtagctaaatataaaaatatacctact 30386877  T
Q  492 cgctaagaaaaata-nnnnnnnngggtagcaagggctacccctcccttgtactaccatccgcccct 556  Q
    |||| |||||||||         |||||||||||||||||||||||||||||||||||| ||||||    
T  30386878 cgctcagaaaaatatttttttttgggtagcaagggctacccctcccttgtactaccatctgcccct 30386943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 409 - 554
Target Start/End: Complemental strand, 13703156 - 13703009
Alignment:
Q  409 aaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctactcgctaagaaaaata--n 506  Q
    ||||||| |||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||       
T  13703156 aaaaaattatttcatctaaaattaaacttgaggtagctaaatatatattattaggggtagctaaatataaaaatatacctacttactaagaaaaatattt 13703057  T
Q  507 nnnnnnngggtagcaagggctacccctcccttgtactaccatccgccc 554  Q
           |||||||||||||||||||||||||||||||||||||||||    
T  13703056 ttttttggggtagcaagggctacccctcccttgtactaccatccgccc 13703009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 29363115 - 29363174
Alignment:
Q  16 tttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaattttag 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29363115 tttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaatcttag 29363174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 29486529 - 29486443
Alignment:
Q  84 aatgtaagtaaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaa 171  Q
    |||||||| ||||||||||||||||||||||| ||||| || ||||||||| ||||||||||||||| || ||||||| | |||||||    
T  29486529 aatgtaagaaaataggttatttgcaagaaact-attgtccaattaatttgtttatgactattgtcttaataatttttactcttgaaaa 29486443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 1780400 - 1780449
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaat 62  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  1780400 gtgtttttagtcttgtatttaatctctaacaaaaaattaaggacaaaaat 1780449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 409 - 490
Target Start/End: Original strand, 7590494 - 7590575
Alignment:
Q  409 aaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctac 490  Q
    ||||||| ||| ||||||||||  |||||| | || | ||||||||||||||||| ||||||||| ||||||||||||||||    
T  7590494 aaaaaattattacatctaaaatcgaacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 7590575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 22956512 - 22956597
Alignment:
Q  136 tatgactattgtcttgatcatttttattgttgaaaaatgtttctttattgttgttattgagacgggaagtatcaaaccaatacaaa 221  Q
    ||||||||||||||||||  |||||||||||||||||  | ||| |||  ||||||||||||  ||||||| ||||||||||||||    
T  22956512 tatgactattgtcttgatagtttttattgttgaaaaagttctctctataattgttattgagagcggaagtaccaaaccaatacaaa 22956597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 221
Target Start/End: Complemental strand, 23831880 - 23831795
Alignment:
Q  136 tatgactattgtcttgatcatttttattgttgaaaaatgtttctttattgttgttattgagacgggaagtatcaaaccaatacaaa 221  Q
    ||||||||||||||||||  |||||||||||||||||  | ||| |||  ||||||||||||  ||||||| ||||||||||||||    
T  23831880 tatgactattgtcttgatagtttttattgttgaaaaagttctctctataattgttattgagagcggaagtaccaaaccaatacaaa 23831795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 27674046 - 27673986
Alignment:
Q  161 attgttgaaaaatgtttctttattgttgttattgagacgggaagtatcaaaccaatacaaa 221  Q
    |||||||||||| |||||| |||| ||||||||||||| | ||||||||||||||||||||    
T  27674046 attgttgaaaaaggtttctctattattgttattgagaccgaaagtatcaaaccaatacaaa 27673986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 33225047 - 33224996
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaa 65  Q
    ||||||||||||||| ||| |||||||||||| ||||||||||||||||||||    
T  33225047 gtgtttttagtcttgcatt-aatctctaacaataaattaaggactaaaattaa 33224996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 24428869 - 24428798
Alignment:
Q  93 aaataggttatttgcaagaaactcattgtacatttaat---ttgtctatgactattgtcttgatcattttta 161  Q
    ||||||||||||| ||||||||||| ||| ||||||||   |||| ||||||||||||||| || |||||||    
T  24428869 aaataggttattttcaagaaactcaatgtccatttaatttgttgtttatgactattgtcttaataattttta 24428798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 1780694 - 1780740
Alignment:
Q  93 aaataggttatttgcaagaaactcattgtacatttaatttgtctatg 139  Q
    |||| |||||||||||||||||||| ||| |||||||||||| ||||    
T  1780694 aaattggttatttgcaagaaactcaatgtccatttaatttgtttatg 1780740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 443 - 492
Target Start/End: Complemental strand, 7639660 - 7639611
Alignment:
Q  443 aactaaatatatattattaggagtagctaaatataaaaatatacctactc 492  Q
    ||||||||||||||||| |||  |||||||||||||| ||||| ||||||    
T  7639660 aactaaatatatattataagggatagctaaatataaatatatatctactc 7639611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 235 - 554
Target Start/End: Complemental strand, 15258 - 14937
Alignment:
Q  235 tgtgtggtgctggtgggctgagagcgtgtgggcctacaattgtattactttatttgttaaataaacgaaatattgttattatttattatttatctctttt 334  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||     
T  15258 tgtgtggtgctggtgggctgagagtgtgtgggcctacaattgtattactttatttgttatataaaccaaatattgttattatttattatttatctctttc 15159  T
Q  335 gggtgttaatctttcaattcttatagaacattatctaataatttgaagttcgaccggaagttaaataaagatagaaaaaatcatttcatctaaaattaaa 434  Q
    |||||||||||||||  ||| ||||  |||||||| |||||||  |||||||||||||||||||||||||||||||||||| ||||||  ||||||||||    
T  15158 gggtgttaatctttcggttcctatacgacattatcaaataattaaaagttcgaccggaagttaaataaagatagaaaaaattatttcacttaaaattaaa 15059  T
Q  435 cttgagataactaaatatatattattaggagtagctaaatataaaaatatacctactcgctaagaaaaat--annnnnnnngggtagcaagggctacccc 532  Q
     ||| | || ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||  |        ||| |||||||||||||||    
T  15058 tttggggtagctaaatatatattattaggggtagctaattataaaaatatacctactcgctcagaaaaataaattttttttgggcagcaagggctacccc 14959  T
Q  533 tcccttgtactaccatccgccc 554  Q
    ||||||||||||||||||||||    
T  14958 tcccttgtactaccatccgccc 14937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 306 - 505
Target Start/End: Complemental strand, 47059 - 46860
Alignment:
Q  306 attgttattatttattatttatctcttttgggtgttaatctttcaattcttatagaacattatctaataatttgaagttcgaccggaagttaaataaaga 405  Q
    ||||||||||||||||||||||||||||||||||||| ||||||   || | ||  |||| ||  |||||||| ||||| ||||||||||||||||||||    
T  47059 attgttattatttattatttatctcttttgggtgttattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaaga 46960  T
Q  406 tagaaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctactcgctaagaaaaata 505  Q
    | |||||||| ||||||| |||||| ||||||| | || | ||||||||||||||||| |||||||||||||||||||||||||||| || | |||||||    
T  46959 tggaaaaaattatttcatttaaaataaaacttggggtagccaaatatatattattaggggtagctaaatataaaaatatacctactcactcaaaaaaata 46860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 188; Significance: 1e-101; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 235 - 558
Target Start/End: Original strand, 5382484 - 5382815
Alignment:
Q  235 tgtgtggtgctggtgggctgagagcgtgtgggcctacaattgtattactttatttgttaaataaacgaaatattgttattatttattatttatctctttt 334  Q
    |||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5382484 tgtgtgatgctggtgggctgagagtgtgtgagcctacaattgtattactttatttgttaaataaaccaaatattgttattatttattatttatctctttt 5382583  T
Q  335 gggtgttaatctttcaattcttatagaacattatctaataatttgaagttcgaccggaagttaaataaagatagaaaaaatcatttca-tctaaaattaa 433  Q
    |||||||||||||||  ||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||    
T  5382584 gggtgttaatctttcggttcttatacgacattatcaaataatttgaagttcgaccggaagttaaataaagatagaaaaaattatttcactttaaaattaa 5382683  T
Q  434 actt-gagataactaa--atatatattattaggagtagctaaatataaaaatatacctactcgctaagaaaaata----nnnnnnnngggtagcaagggc 526  Q
    | || | | || ||||  ||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||            |||||||||||||    
T  5382684 atttgggggtagctaaatatatatattattaggggtagctaaatataaaaatatacctacttgctcagaaaaatattttttttttgggggtagcaagggc 5382783  T
Q  527 tacccctcccttgtactaccatccgcccctga 558  Q
    |||| |||||||||||||||||||||||||||    
T  5382784 tacctctcccttgtactaccatccgcccctga 5382815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 267 - 495
Target Start/End: Complemental strand, 10585324 - 10585096
Alignment:
Q  267 cctacaattgtattactttatttgttaaataaacgaaatattgttattatttattatttatctcttttgggtgttaatctttcaattcttatagaacatt 366  Q
    |||| ||||| |||| |||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||| |||| |  ||| ||||  ||||     
T  10585324 cctataattgaattattttatttgttaaataaagcaaagattgttattatttattatttatctcttttgggtgttattcttccggttcctatacgacatg 10585225  T
Q  367 atctaataatttgaagttcgaccggaagttaaataaagatagaaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagt 466  Q
    ||  |||||||||||||||||||| ||| ||||||||||| |||| ||| ||||||  |||||| ||| ||| |||| ||||||||||||||||||| ||    
T  10585224 attaaataatttgaagttcgaccgaaagctaaataaagatggaaagaattatttcacttaaaataaaatttgggatagctaaatatatattattaggggt 10585125  T
Q  467 agctaaatataaaaatatacctactcgct 495  Q
    ||||||| |||||||||| ||||||||||    
T  10585124 agctaaaaataaaaatatccctactcgct 10585096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 268 - 505
Target Start/End: Original strand, 36314406 - 36314644
Alignment:
Q  268 ctacaattgtattactttatttgttaaataaacgaaatattgttattatttattatttatctcttttgggtgttaatctttcaattcttatagaacatta 367  Q
    ||||||||| || | |||||||||||||||||  ||| ||||||||||||||||||||||||||||||| ||||| ||||||   || ||||  |||| |    
T  36314406 ctacaattgaatcattttatttgttaaataaagcaaagattgttattatttattatttatctcttttggatgttattctttcggatcctatacgacatga 36314505  T
Q  368 tctaataatttgaagttcgaccggaagttaaataaagatagaaaaaatcatttcatctaaaattaaactt-gagataactaaatatatattattaggagt 466  Q
    |  |||||||| ||||| ||||||||||||||||||||| |||||||| ||||||| |||||| |||||| | | || | ||||||||||||||||| ||    
T  36314506 ttgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattatttcatttaaaataaaacttgggggtagccaaatatatattattaggggt 36314605  T
Q  467 agctaaatataaaaatatacctactcgctaagaaaaata 505  Q
    | ||||||||||||||||||||||||||| | |||||||    
T  36314606 aactaaatataaaaatatacctactcgctcaaaaaaata 36314644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 268 - 505
Target Start/End: Original strand, 1592923 - 1593160
Alignment:
Q  268 ctacaattgtattactttatttgttaaataaacgaaatattgttattatttattatttatctcttttgggtgttaatctttcaattcttatagaacatta 367  Q
    ||||||||| || | |||||||||||||||||  ||| |||||||||||||||||||||||||||||||||  || |||||||  || | ||  |||| |    
T  1592923 ctacaattgaatcattttatttgttaaataaagtaaagattgttattatttattatttatctcttttgggttctattctttcagatcctgtacgacatga 1593022  T
Q  368 tctaataatttgaagttcgaccggaagttaaataaagatagaaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagta 467  Q
    |  |||||||| ||||| ||||||||||||||||||||| |||||||| ||||||| |||||| ||||||| | || | ||||||||||||||||| |||    
T  1593023 ttgaataatttaaagtttgaccggaagttaaataaagatggaaaaaattatttcatttaaaataaaacttggggtagccaaatatatattattaggggta 1593122  T
Q  468 gctaaatataaaaatatacctactcgctaagaaaaata 505  Q
     ||||||||||||||||||| ||||||| | |||||||    
T  1593123 actaaatataaaaatataccaactcgctcaaaaaaata 1593160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 374 - 558
Target Start/End: Original strand, 1043292 - 1043478
Alignment:
Q  374 aatttgaagttcgaccggaagttaaataaagatagaaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaa 473  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||  |||||||||||||| | || | ||||| ||||||||||| |||||||||    
T  1043292 aatttgaagttcgaccggaagttaaataaagatagtaaaaattatttcacttaaaattaaacttggggtagccaaataaatattattaggggtagctaaa 1043391  T
Q  474 tataaaaatatacctactcgct--aagaaaaatannnnnnnngggtagcaagggctacccctcccttgtactaccatccgcccctga 558  Q
    ||||||||||||||||||||||  || ||||| |        |||||||||||||||||||| |||  |||||||||||||||||||    
T  1043392 tataaaaatatacctactcgctcaaaaaaaaaaaaaaatttggggtagcaagggctacccctgcctactactaccatccgcccctga 1043478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 374 - 557
Target Start/End: Original strand, 9190281 - 9190466
Alignment:
Q  374 aatttgaagttcgaccggaagttaaataaagatagaaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaa 473  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||  |||||||||||||| | || | ||||| ||||||||||| |||||||||    
T  9190281 aatttgaagttcgaccggaagttaaataaagatagtaaaaattatttcacttaaaattaaacttggggtagccaaataaatattattaggggtagctaaa 9190380  T
Q  474 tataaaaatatacctactcgct--aagaaaaatannnnnnnngggtagcaagggctacccctcccttgtactaccatccgcccctg 557  Q
    ||||||||||||||||||||||  || ||||| |        |||||||||||||||||||| |||  ||||||||||||||||||    
T  9190381 tataaaaatatacctactcgctcaaaaaaaaaaattattttggggtagcaagggctacccctgcctactactaccatccgcccctg 9190466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 75 - 221
Target Start/End: Complemental strand, 4435338 - 4435192
Alignment:
Q  75 gtcttttcaaatgtaagtaaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatg 174  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||| |||| || || |||||||||||||||| ||| |||||||||||| ||||| |    
T  4435338 gtcttttcaaatgtaaataaataggttatttacaagaaactcattgtccattaaaattatctatgactattgtctagataatttttattgttaaaaaagg 4435239  T
Q  175 tttctttattgttgttattgagacgggaagtatcaaaccaatacaaa 221  Q
    ||||| |||  ||||||||||||| ||||||||||||| ||||||||    
T  4435238 tttctctataattgttattgagaccggaagtatcaaacaaatacaaa 4435192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 317 - 453
Target Start/End: Complemental strand, 7494895 - 7494759
Alignment:
Q  317 ttattatttatctcttttgggtgttaatctttcaattcttatagaacattatctaataatttgaagttcgaccggaagttaaataaagatagaaaaaatc 416  Q
    ||||| ||| |||||||||||||||||||||||  ||| ||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  7494895 ttattctttttctcttttgggtgttaatctttcggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaagatagaaaaaatt 7494796  T
Q  417 atttcatctaaaattaaacttgagataactaaatata 453  Q
    ||||||  |||||||||| ||| | || |||||||||    
T  7494795 atttcacttaaaattaaatttggggtagctaaatata 7494759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 311 - 431
Target Start/End: Original strand, 22333390 - 22333510
Alignment:
Q  311 tattatttattatttatctcttttgggtgttaatctttcaattcttatagaacattatctaataatttgaagttcgaccggaagttaaataaagatagaa 410  Q
    ||||| |||||||||||||| |||||||||||||||| | |||| | || ||||||||| |||||||||||||| ||||||||| ||||||||||| |||    
T  22333390 tattacttattatttatctcctttgggtgttaatcttccgattcctttacaacattatcaaataatttgaagtttgaccggaagctaaataaagatggaa 22333489  T
Q  411 aaaatcatttcatctaaaatt 431  Q
    ||||| ||||||  |||||||    
T  22333490 aaaattatttcacataaaatt 22333510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 465 - 557
Target Start/End: Complemental strand, 7494771 - 7494679
Alignment:
Q  465 gtagctaaatataaaaatatacctactcgctaagaaaaatannnnnnnngggtagcaagggctacccctcccttgtactaccatccgcccctg 557  Q
    ||||||||||||||||||||||||||||||| | |||||||        ||||||||||||||||||||||||||||||| ||||||||||||    
T  7494771 gtagctaaatataaaaatatacctactcgctcaaaaaaatattttttttgggtagcaagggctacccctcccttgtactatcatccgcccctg 7494679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 7495141 - 7495082
Alignment:
Q  16 tttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaattttag 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7495141 tttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaatcttag 7495082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 260 - 435
Target Start/End: Original strand, 12563666 - 12563837
Alignment:
Q  260 gtgtgggcctacaattgtattactttatttgttaaataaacgaaatattgttattatttattatttatctcttttgggtgttaatctttcaattcttata 359  Q
    |||||||||||| | ||| ||| |||||||||||||||||| ||| ||| |||    |||||||||||||||||||| |||||||||| ||||||  |||    
T  12563666 gtgtgggcctactactgtcttattttatttgttaaataaaccaaagattatta----ttattatttatctcttttggatgttaatcttccaattcccata 12563761  T
Q  360 gaacattatctaataatttgaagttcgaccggaagttaaataaagatagaaaaaatcatttcatctaaaattaaac 435  Q
      |||| ||  | |||||||||||||||||||||| |||||||  ||  ||||||| ||||||  |||||| ||||    
T  12563762 cgacatgattaagtaatttgaagttcgaccggaagctaaataagaatgaaaaaaattatttcacttaaaataaaac 12563837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 81 - 170
Target Start/End: Complemental strand, 38881795 - 38881702
Alignment:
Q  81 tcaaatgtaagtaaataggttatttgcaagaaa----ctcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaa 170  Q
    |||||||||| |||||| ||||||||||| |||    ||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||    
T  38881795 tcaaatgtaaataaatacgttatttgcaaaaaaaaaactcattgtacatttaatttatctatgactattatcttgataatttttattgttgaaa 38881702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 317 - 554
Target Start/End: Complemental strand, 10412838 - 10412608
Alignment:
Q  317 ttattatttatctcttttgggtgttaatctttcaattcttatagaacattatctaataatttgaagttcgaccggaagttaaataaagat-agaaaaaat 415  Q
    |||||||||||||||||||||||||||||||  | ||| |||| ||||| |    |||||||||||||| |||  |||||||||||| || | |||||||    
T  10412838 ttattatttatctcttttgggtgttaatcttctagttcctatacaacatgac---ataatttgaagttcaaccaaaagttaaataaacatgaaaaaaaat 10412742  T
Q  416 catttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctactcgctaagaaaaatannnnnnnngg 515  Q
     | ||||  |||||| ||| ||| | || |||||| |||||||||||   ||||||||||||||||||| | |||||| ||| ||||| |        ||    
T  10412741 tagttcacttaaaataaaatttggg-tagctaaatgtatattattagagatagctaaatataaaaatatgcatactcgttaaaaaaaaaa---aattggg 10412646  T
Q  516 gtagcaagggctacccctcccttgtactaccatccgccc 554  Q
    ||||||||||||| ||||||||| |||||||||||||||    
T  10412645 gtagcaagggcta-ccctcccttatactaccatccgccc 10412608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 4435527 - 4435465
Alignment:
Q  14 tgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaattttagt 76  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||    
T  4435527 tgtttttagtcttgaatttaatctctaacaaaatattaaggactaaaattaataaatcttagt 4435465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 75 - 150
Target Start/End: Original strand, 42799189 - 42799264
Alignment:
Q  75 gtcttttcaaatgtaagtaaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtctt 150  Q
    |||||||| |||||||  |||||| |||||||||||||||||| ||| |||||||||||| |||||||||||||||    
T  42799189 gtcttttccaatgtaaacaaatagtttatttgcaagaaactcaatgtccatttaatttgtttatgactattgtctt 42799264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 16546791 - 16546748
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggac 56  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  16546791 gtgtttttagtcttgtatttaatctctaacaaaaaattaaggac 16546748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 371 - 502
Target Start/End: Complemental strand, 25280128 - 25279998
Alignment:
Q  371 aataatttgaagttcgaccggaagttaaataaagatagaaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagct 470  Q
    ||||||| ||||||||||  ||| | |||||| ||| |||||||  |  |||| |||||| ||| ||| ||||  ||||||||||||||||| ||||||     
T  25280128 aataattcgaagttcgacatgaact-aaataaggatggaaaaaaaaaaatcatttaaaataaaatttgggatagttaaatatatattattagaagtagcc 25280030  T
Q  471 aaatataaaaatatacctactcgctaagaaaa 502  Q
    ||||||||| |||||||||||| |||| ||||    
T  25280029 aaatataaatatatacctactcactaaaaaaa 25279998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 38881963 - 38881902
Alignment:
Q  14 tgtttttagtcttgaatttaatctctaacaaaaaat------taaggactaaaattaacaaa 69  Q
    ||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||    
T  38881963 tgtttttagtcttgaatttaatctctaacaaaaaataaaaaataaggactaaaattaacaaa 38881902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 409 - 491
Target Start/End: Original strand, 41732610 - 41732692
Alignment:
Q  409 aaaaaatcatttcatctaaaattaaacttgagataactaaatatatattattaggagtagctaaatataaaaatatacctact 491  Q
    ||||||| |||||| |||||||  |||||| | || | ||||||||||||||||| ||||||| ||||||||| |||||||||    
T  41732610 aaaaaattatttcaactaaaatctaacttggggtagccaaatatatattattaggggtagctacatataaaaacatacctact 41732692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 39069785 - 39069834
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaat 62  Q
    ||||||||||||||| |||||||||||||||||||||||| ||| |||||    
T  39069785 gtgtttttagtcttgtatttaatctctaacaaaaaattaaagacaaaaat 39069834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 447 - 490
Target Start/End: Complemental strand, 2096146 - 2096103
Alignment:
Q  447 aaatatatattattaggagtagctaaatataaaaatatacctac 490  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||    
T  2096146 aaatatatattattaggggtagctaaacataaaaatatacctac 2096103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 37614836 - 37614791
Alignment:
Q  16 tttttagtcttgaatttaatctctaacaaaaaattaaggactaaaa 61  Q
    |||||||||||| ||||||||||||| ||||||||||||| |||||    
T  37614836 tttttagtcttgtatttaatctctaaaaaaaaattaaggattaaaa 37614791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 42798896 - 42798945
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaat 62  Q
    ||||||||||||||| ||||||||| |||| ||||||||| |||||||||    
T  42798896 gtgtttttagtcttgtatttaatctataactaaaaattaaagactaaaat 42798945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 447 - 491
Target Start/End: Original strand, 21613399 - 21613443
Alignment:
Q  447 aaatatatattattaggagtagctaaatataaaaatatacctact 491  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||||    
T  21613399 aaatatatattattaggggtagccaaatataataatatacctact 21613443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 514 - 553
Target Start/End: Original strand, 22338623 - 22338662
Alignment:
Q  514 gggtagcaagggctacccctcccttgtactaccatccgcc 553  Q
    |||||||| |||||||||||||||| ||||||||||||||    
T  22338623 gggtagcacgggctacccctcccttatactaccatccgcc 22338662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 132
Target Start/End: Original strand, 39070246 - 39070285
Alignment:
Q  93 aaataggttatttgcaagaaactcattgtacatttaattt 132  Q
    ||||||||||||||||||||||||| ||| ||||||||||    
T  39070246 aaataggttatttgcaagaaactcaatgtccatttaattt 39070285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 16546400 - 16546354
Alignment:
Q  93 aaataggttatttgcaagaaactcattgtacatttaatttgtctatg 139  Q
    |||||||||||||| |||||||||| ||| |||||||||||| ||||    
T  16546400 aaataggttatttggaagaaactcaatgtccatttaatttgtttatg 16546354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 16546717 - 16546667
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaacaa-aaaattaaggactaaaat 62  Q
    ||||||||||||||  |||||||||||||||| |||||||||||| |||||    
T  16546717 gtgtttttagtcttatatttaatctctaacaaaaaaattaaggacaaaaat 16546667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 450 - 491
Target Start/End: Complemental strand, 9754080 - 9754039
Alignment:
Q  450 tatatattattaggagtagctaaatataaaaatatacctact 491  Q
    ||||||||||||   |||||||||||||||||||||||||||    
T  9754080 tatatattattaacggtagctaaatataaaaatatacctact 9754039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 450 - 491
Target Start/End: Original strand, 14160606 - 14160647
Alignment:
Q  450 tatatattattaggagtagctaaatataaaaatatacctact 491  Q
    |||||||||||||| |||||||| |||| |||||||||||||    
T  14160606 tatatattattaggggtagctaagtatacaaatatacctact 14160647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 95; Significance: 4e-46; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 75 - 221
Target Start/End: Original strand, 292268 - 292414
Alignment:
Q  75 gtcttttcaaatgtaagtaaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatg 174  Q
    |||||||||||| ||| ||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||| |    
T  292268 gtcttttcaaatataaataaataggttattcgcaagaaactcattgttcatttaatttgtctatgaatattgtcttgataatttttattgttgaaaaagg 292367  T
Q  175 tttctttattgttgttattgagacgggaagtatcaaaccaatacaaa 221  Q
     |||| ||| |||||||||||||  || |||||||||||||||||||    
T  292368 cttctctatagttgttattgagatcgggagtatcaaaccaatacaaa 292414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 292106 - 292168
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaattttag 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  292106 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaatcttag 292168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 81; Significance: 1e-37; HSPs: 2)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 75 - 197
Target Start/End: Complemental strand, 6765 - 6646
Alignment:
Q  75 gtcttttcaaatgtaagtaaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatg 174  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||   | |||||||||||||||||| |    
T  6765 gtcttttcaaatgtaaataaataggttatttgcaagaaattcattgtccatttaatttgtctatgactattgtct---taatttttattgttgaaaaaag 6669  T
Q  175 tttctttattgttgttattgaga 197  Q
    ||||| || ||||||||||||||    
T  6668 tttctctagtgttgttattgaga 6646  T

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Target: scaffold0481; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 6913 - 6863
Alignment:
Q  16 tttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaac 66  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6913 tttttagtcttgaatttaatctttaacaaaaaattaaggactaaaattaac 6863  T

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Target: scaffold0186 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 78 - 221
Target Start/End: Complemental strand, 22787 - 22644
Alignment:
Q  78 ttttcaaatgtaagtaaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatgttt 177  Q
    ||||| |||||||  ||||||||||||||||||||| ||| ||  |||||||| ||| |||||||||||||||||| ||||||||| ||||||||  |||    
T  22787 ttttccaatgtaaacaaataggttatttgcaagaaattcaatgcccatttaatatgtttatgactattgtcttgataatttttattattgaaaaagtttt 22688  T
Q  178 ctttattgttgttattgagacgggaagtatcaaaccaatacaaa 221  Q
    || ||||||||||||||| || ||||||  ||||||||||||||    
T  22687 ctctattgttgttattgaaaccggaagttccaaaccaatacaaa 22644  T

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Target: scaffold1554 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: scaffold1554
Description:

Target: scaffold1554; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 1010 - 948
Alignment:
Q  13 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaattttag 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1010 gtgtttttagtcttgaatttaatctctaacaaaaaattaaggactaaaattaacaaatattag 948  T

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Target: scaffold1554; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 137 - 221
Target Start/End: Complemental strand, 812 - 729
Alignment:
Q  137 atgactattgtcttgatcatttttattgttgaaaaatgtttctttattgttgttattgagacgggaagtatcaaaccaatacaaa 221  Q
    ||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||| ||||  ||| |||||||||||||||||    
T  812 atgactattgtcttgataatttttattgttgaaaaaggtttctctattgttgttatttagac-cgaaatatcaaaccaatacaaa 729  T

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Target: scaffold0110 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 94 - 217
Target Start/End: Original strand, 6930 - 7053
Alignment:
Q  94 aataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatgtttctttattgttgttatt 193  Q
    |||| ||||||||||| ||||| ||||| |||||||| ||| |||||||||||||||||| |||||||||||||| |||  ||||  |||  |||||||     
T  6930 aatatgttatttgcaataaacttattgttcatttaatctgtttatgactattgtcttgataatttttattgttgacaaagttttccctataattgttatc 7029  T
Q  194 gagacgggaagtatcaaaccaata 217  Q
    ||||| | ||||||||||||||||    
T  7030 gagactgaaagtatcaaaccaata 7053  T

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Target: scaffold0002 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 78 - 215
Target Start/End: Original strand, 428367 - 428502
Alignment:
Q  78 ttttcaaatgtaagtaaataggttatttgcaagaaactcattgtacatttaatttgtctatgactattgtcttgatcatttttattgttgaaaaatgttt 177  Q
    ||||| |||||||| |||||| ||||||| |||||||| ||||| |||||||||||| ||| ||||||||||| || |||||||  |||||||| | |||    
T  428367 ttttccaatgtaagcaaatagattatttgtaagaaact-attgtccatttaatttgtttattactattgtcttaataatttttaccgttgaaaagt-ttt 428464  T
Q  178 ctttattgttgttattgagacgggaagtatcaaaccaa 215  Q
    || |||   | |||||||||||| ||| ||||||||||    
T  428465 ctctataactattattgagacggtaagcatcaaaccaa 428502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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