View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_low_10 (Length: 533)
Name: NF1711_low_10
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 13342368 - 13342659
Alignment:
| Q |
1 |
cagatagaagaaattcctcccgttatgcagaagcttccattggtttcatccgagttagagaagctagagggaagggtggaatttgtgtaatgaaaggtat |
100 |
Q |
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| T |
13342368 |
cagatagaagaaattcctcacattatgcagaagcttctattggtttcatccgagttagagaagctagagggaagggtggaatttgt------aaaggtat |
13342461 |
T |
|
| Q |
101 |
tgtagaagatggaatcatattggtttcttctgtcaaagtaacattctatttgttaccactagattagactgacaacttcacttctcttagtaattttatt |
200 |
Q |
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| T |
13342462 |
tgtagaagatggaatcatattggtttcttctgtcgaagtaacattctatttgttaccactatattagactcacaacttcacttctcttagtaattttatt |
13342561 |
T |
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| Q |
201 |
caattcctacactgttttgcttgatttcaatactgaaaaccaaaatcattcttttatatactatgctatcatgaaaaccaaaatgaaagatcggtgtt |
298 |
Q |
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| T |
13342562 |
cacttccaacactgttttccttaacttcaatactgaaaaccaaaatcattcttttatatactatgctatcatgaaaaccaaaatgaaagatcgttgtt |
13342659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 295 - 519
Target Start/End: Original strand, 13343432 - 13343656
Alignment:
| Q |
295 |
tgttcttcaaaccaacttggttgcaacacatgcaagtaataaagtgcattttaaaccctccttaggttaacacagtcacatgcaatgcacaaggccgtgc |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
13343432 |
tgttcttcaaaccaacttggttgcaacacatgcaagtaataaagtgcattttaaaccctccttaggttaacacagtcacatgcaacgcacaaggccgtgc |
13343531 |
T |
|
| Q |
395 |
caatgctctagatgcatttatgcattttcacgtatgtagggaagacctaaggcccgtgcataaatgatccattccctaggttttggtataaaaggaaagg |
494 |
Q |
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| T |
13343532 |
caatgctctagatgcatttatgcattttcacgtatgtagggaagacctaaggcccgtgcataaatgatccattccctaggttttggtataaaaggaaagg |
13343631 |
T |
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| Q |
495 |
gaaaatatgtgcaacatgttcttgg |
519 |
Q |
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| T |
13343632 |
gaaaatatgtgcaacatgttcttgg |
13343656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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