View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1711_low_102 (Length: 230)

Name: NF1711_low_102
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1711_low_102
NF1711_low_102
[»] chr2 (16 HSPs)
chr2 (1-139)||(10446968-10447105)
chr2 (14-179)||(10545593-10545757)
chr2 (11-179)||(10518822-10518989)
chr2 (4-137)||(10489347-10489480)
chr2 (4-188)||(10463869-10464052)
chr2 (10-179)||(10493379-10493547)
chr2 (11-179)||(10475074-10475241)
chr2 (11-179)||(10507938-10508105)
chr2 (11-153)||(7478034-7478176)
chr2 (38-188)||(28102216-28102365)
chr2 (39-179)||(10849931-10850070)
chr2 (38-188)||(27968454-27968603)
chr2 (38-188)||(28091984-28092133)
chr2 (15-179)||(7481624-7481787)
chr2 (4-148)||(10863451-10863595)
chr2 (32-113)||(6915107-6915188)
[»] chr7 (1 HSPs)
chr7 (11-134)||(15047568-15047691)


Alignment Details
Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 10447105 - 10446968
Alignment:
Q  1 tattcaattatttcttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10447105 tattcaattatttcttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaa-ttataaaaa 10447007  T
Q  101 ctgtgtctgaggtggacaacaaacttgcggaagcttttt 139  Q
    |||||||||||||||||||||||||||||||||||||||    
T  10447006 ctgtgtctgaggtggacaacaaacttgcggaagcttttt 10446968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 10545757 - 10545593
Alignment:
Q  14 cttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaactgtgtctgaggt 113  Q
    ||||||||||||||||| |||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||    
T  10545757 cttattgcagagaaaaggttgttgttgaagaagttcccgaagatatggaagccttggtgtcagaaaaaaggcatgaactcataaaaactgtatcagaggt 10545658  T
Q  114 ggacaacaaacttgcggaagctttttgcagtgacaagtcccatatcagcctctgatcttgaggtgt 179  Q
     ||| | |||||||| |||||||||||||| |||||| ||||| |||||  |||||||||||||||    
T  10545657 agacgataaacttgctgaagctttttgcagcgacaag-cccatttcagcagctgatcttgaggtgt 10545593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 11 - 179
Target Start/End: Complemental strand, 10518989 - 10518822
Alignment:
Q  11 tttcttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaactgtgtctga 110  Q
    |||||||||||||| ||||| |||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  10518989 tttcttattgcagaaaaaaggttgtcgttgaagaagttcccacatatatggaagccttggtgtcagaaaaaaggcatgaactcataaaaactgtgtccga 10518890  T
Q  111 ggtggacaacaaacttgcggaagctttttgcagtgacaagtcccatatcagcctctgatcttgaggtgt 179  Q
    |||||||   |||||||| ||||||||||||| || |||| |||||||||||  |||||||| ||||||    
T  10518889 ggtggacggtaaacttgctgaagctttttgcattggcaag-cccatatcagctgctgatcttaaggtgt 10518822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 10489480 - 10489347
Alignment:
Q  4 tcaattatttcttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaactg 103  Q
    ||||||||||||||||||||||||||| |||||| |||   |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10489480 tcaattatttcttattgcagagaaaagcttgtcgctgagctagttcctggatatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaactg 10489381  T
Q  104 tgtctgaggtggacaacaaacttgcggaagcttt 137  Q
    |||| ||||||||| | |||||||| ||||||||    
T  10489380 tgtccgaggtggacgataaacttgctgaagcttt 10489347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 4 - 188
Target Start/End: Complemental strand, 10464052 - 10463869
Alignment:
Q  4 tcaattatttcttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaactg 103  Q
    |||||| ||||||||||||||  || | ||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||    
T  10464052 tcaattgtttcttattgcagaataatggttgtcattgaagaagttcctgcagatatggaagctttggtgttagaaaaaaggcatgaactcataaaaactg 10463953  T
Q  104 tgtctgaggtggacaacaaacttgcggaagctttttgcagtgacaagtcccatatcagcctctgatcttgaggtgttttggtaac 188  Q
    |||| || |||||  | |||||||| || ||||||||||||| |||| |||||||||||  |||||||| |||||| | ||||||    
T  10463952 tgtcagacgtggatgataaacttgctgaggctttttgcagtggcaag-cccatatcagcagctgatcttcaggtgtgtgggtaac 10463869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 10 - 179
Target Start/End: Complemental strand, 10493547 - 10493379
Alignment:
Q  10 atttcttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaactgtgtctg 109  Q
    |||||||||||||| |||||| |||| |||||||||||||||  | |||||||| |||||||||||  |||||||| ||| ||||||||||||||||| |    
T  10493547 atttcttattgcagtgaaaaggttgttgttgaagaagttcctagaaatatggaatccttggtgtcaagaaaaaggcgtgaccttataaaaactgtgtccg 10493448  T
Q  110 aggtggacaacaaacttgcggaagctttttgcagtgacaagtcccatatcagcctctgatcttgaggtgt 179  Q
    |||||||| | |||||||| ||||||||| |||||||||| |||||| |||||  |||||||||||||||    
T  10493447 aggtggacgataaacttgctgaagcttttagcagtgacaa-tcccatctcagcagctgatcttgaggtgt 10493379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 179
Target Start/End: Complemental strand, 10475241 - 10475074
Alignment:
Q  11 tttcttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaactgtgtctga 110  Q
    |||||||||||||| ||||| || |||||||||||||||||| | |||||||||||||||||||| | ||||||| ||||||||||||||||||||| ||    
T  10475241 tttcttattgcagacaaaaggttttcgttgaagaagttcctggatatatggaagccttggtgtcacagaaaaggcgtgaacttataaaaactgtgtccga 10475142  T
Q  111 ggtggacaacaaacttgcggaagctttttgcagtgacaagtcccatatcagcctctgatcttgaggtgt 179  Q
    ||||||| | |||||||| ||||||||  |  |||||||| ||||| |||||  |||||||||||||||    
T  10475141 ggtggacgataaacttgcagaagctttcagtggtgacaag-cccatctcagcagctgatcttgaggtgt 10475074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 179
Target Start/End: Complemental strand, 10508105 - 10507938
Alignment:
Q  11 tttcttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaactgtgtctga 110  Q
    |||||||||||||||||||| ||||||||| |||||||||||   ||||||| ||||||||||||| |||||||| ||||||||||||||||||||| ||    
T  10508105 tttcttattgcagagaaaaggttgtcgttggagaagttcctggctatatggacgccttggtgtcaggaaaaaggcgtgaacttataaaaactgtgtccga 10508006  T
Q  111 ggtggacaacaaacttgcggaagctttttgcagtgacaagtcccatatcagcctctgatcttgaggtgt 179  Q
    ||| ||| | |||||||| ||||||||  |  |||||||| |||||||||||  |||||||||||||||    
T  10508005 ggttgacgataaacttgctgaagctttcggtggtgacaag-cccatatcagcagctgatcttgaggtgt 10507938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 11 - 153
Target Start/End: Original strand, 7478034 - 7478176
Alignment:
Q  11 tttcttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaactgtgtctga 110  Q
    ||||||||||||||||||||  |  |||||||||||||||| ||  |||||||| ||||||||||  |||||||| ||| ||||||||||||||||| ||    
T  7478034 tttcttattgcagagaaaaggctaccgttgaagaagttccttcatgtatggaagtcttggtgtcaagaaaaaggcgtgaccttataaaaactgtgtccga 7478133  T
Q  111 ggtggacaacaaacttgcggaagctttttgcagtgacaagtcc 153  Q
    ||||||||| |||||||| ||||||||||||||||||||||||    
T  7478134 ggtggacaataaacttgctgaagctttttgcagtgacaagtcc 7478176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 38 - 188
Target Start/End: Original strand, 28102216 - 28102365
Alignment:
Q  38 ttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaactgtgtctgaggtggacaacaaacttgcggaagcttt 137  Q
    ||||||||||||||||||||||| |||||||||| |||||||| |||| |||||| ||| ||||||||||  |||||||| | |||||||| ||||||||    
T  28102216 ttgaagaagttcctgcagatatgaaagccttggtctcagaaaagaggcgtgaactcatagaaactgtgtcaaaggtggacgaaaaacttgctgaagcttt 28102315  T
Q  138 ttgcagtgacaagtcccatatcagcctctgatcttgaggtgttttggtaac 188  Q
    ||||||||| ||| |||||||||||  ||||||||||||||| ||| ||||    
T  28102316 ttgcagtgataag-cccatatcagcaactgatcttgaggtgtgttgttaac 28102365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 39 - 179
Target Start/End: Complemental strand, 10850070 - 10849931
Alignment:
Q  39 tgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaactgtgtctgaggtggacaacaaacttgcggaagctttt 138  Q
    |||||||||||||| ||||||||||| ||| |||||||||||||||| ||| || ||| |||||||||||||||||||| | |||||||| |||||||||    
T  10850070 tgaagaagttcctgaagatatggaagacttcgtgtcagaaaaaaggcgtgagctcatacaaactgtgtctgaggtggacgataaacttgctgaagctttt 10849971  T
Q  139 tgcagtgacaagtcccatatcagcctctgatcttgaggtgt 179  Q
     || |||||||| |||||||||||  |||||||||||||||    
T  10849970 cgctgtgacaag-cccatatcagcacctgatcttgaggtgt 10849931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 38 - 188
Target Start/End: Complemental strand, 27968603 - 27968454
Alignment:
Q  38 ttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaactgtgtctgaggtggacaacaaacttgcggaagcttt 137  Q
    ||||||||||||||||||||||| |||||||||| |||||||| |||| |||||| ||| ||||||||||  |||||||| | |||||||| ||||||||    
T  27968603 ttgaagaagttcctgcagatatgaaagccttggtctcagaaaagaggcgtgaactcatagaaactgtgtcaaaggtggacgaaaaacttgctgaagcttt 27968504  T
Q  138 ttgcagtgacaagtcccatatcagcctctgatcttgaggtgttttggtaac 188  Q
    |||||| || ||| |||||||||||  ||||||||||||||| ||| ||||    
T  27968503 ttgcagcgataag-cccatatcagcaactgatcttgaggtgtgttgttaac 27968454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 38 - 188
Target Start/End: Original strand, 28091984 - 28092133
Alignment:
Q  38 ttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaactgtgtctgaggtggacaacaaacttgcggaagcttt 137  Q
    ||||||||||||||||||||||| |||||||||| |||||||| |||| |||||| ||| ||||||||||  |||||||| | |||||||| ||||||||    
T  28091984 ttgaagaagttcctgcagatatgaaagccttggtctcagaaaagaggcgtgaactcatagaaactgtgtcaaaggtggacgaaaaacttgctgaagcttt 28092083  T
Q  138 ttgcagtgacaagtcccatatcagcctctgatcttgaggtgttttggtaac 188  Q
    |||||| || ||| |||||||||||  ||||||||||||||| ||| ||||    
T  28092084 ttgcagcgataag-cccatatcagcaactgatcttgaggtgtgttgttaac 28092133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 179
Target Start/End: Original strand, 7481624 - 7481787
Alignment:
Q  15 ttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaactgtgtctgaggtg 114  Q
    ||||||||||||||||  |   |||||||||||||||||   |||||||||||||||||||  |||||||| ||| |||||| |||||||| | ||||      
T  7481624 ttattgcagagaaaaggctactgttgaagaagttcctgcgtgtatggaagccttggtgtcaagaaaaaggcgtgaccttatagaaactgtgcccgaggct 7481723  T
Q  115 gacaacaaacttgcggaagctttttgcagtgacaagtcccatatcagcctctgatcttgaggtgt 179  Q
    ||| | |||||||| ||||||||| ||||||||||| ||||| |||||| |||||||||||||||    
T  7481724 gacgataaacttgctgaagcttttagcagtgacaag-cccatctcagccgctgatcttgaggtgt 7481787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 148
Target Start/End: Complemental strand, 10863595 - 10863451
Alignment:
Q  4 tcaattatttcttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaactg 103  Q
    |||||| ||||| |||||||||||||| || ||||||| |||||||||||| |||||||||||| |||||| |||||||| || ||||| ||| |||| |    
T  10863595 tcaattgtttctgattgcagagaaaaggttttcgttgaggaagttcctgcacatatggaagcctcggtgtctgaaaaaagacaggaactcatagaaaccg 10863496  T
Q  104 tgtctgaggtggacaacaaacttgcggaagctttttgcagtgaca 148  Q
    |||| ||||||||  | |||||||| |||||| ||| ||||||||    
T  10863495 tgtcagaggtggatgataaacttgctgaagctctttccagtgaca 10863451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 6915107 - 6915188
Alignment:
Q  32 ttgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaactgtgtctgaggt 113  Q
    |||| |||| |||||| ||||||||||||||||| |||||  |||| ||||| | |||||| ||| |||||||||| |||||    
T  6915107 ttgttgttggagaagtgcctgcagatatggaagctttggtagcagagaaaagacgtgaactcatagaaactgtgtcagaggt 6915188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 134
Target Start/End: Complemental strand, 15047691 - 15047568
Alignment:
Q  11 tttcttattgcagagaaaagattgtcgttgaagaagttcctgcagatatggaagccttggtgtcagaaaaaaggcatgaacttataaaaactgtgtctga 110  Q
    |||||||||| ||||||||  ||  | |||||||||| ||| |||||||||||||||||||| |||||||||| |||||||| ||| |||||||||| ||    
T  15047691 tttcttattgtagagaaaaacttaccattgaagaagtgccttcagatatggaagccttggtggcagaaaaaagacatgaactaatagaaactgtgtcaga 15047592  T
Q  111 ggtggacaacaaacttgcggaagc 134  Q
    ||| ||  | | ||||||||||||    
T  15047591 ggttgatgatatacttgcggaagc 15047568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 10131 times since January 2019
Visitors: 7975