View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_low_104 (Length: 227)
Name: NF1711_low_104
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_low_104 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 12 - 210
Target Start/End: Original strand, 2425795 - 2425993
Alignment:
| Q |
12 |
cagagacatgagacctaaggtaagccctgacatcaatccagcaaagacaacaagaagaacaattatcataattcttatgaaaaactctgtttcacaacac |
111 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2425795 |
cagagacatgaggcctaaggtaagccctgacatcaatccagcaaagacaacaagaagaacaattatcataattcttatgaaaaactctgtttcacaacac |
2425894 |
T |
|
| Q |
112 |
ctatactccactgccattgaaaattaacaaaaacactacaatacacgcaagctgttctggttgttactgtgtttttcaagccttgagttagagaaagca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2425895 |
ctatactccactgccattgaaaattaacaaaaacactacagtacacgcaagctgttctggttgttactgtgtttttcaagccttgagttagagaaagca |
2425993 |
T |
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