View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_low_11 (Length: 518)
Name: NF1711_low_11
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 319
Target Start/End: Original strand, 54251743 - 54252043
Alignment:
| Q |
19 |
atagagtaaaagagacagatgtaaaggctgacaataaaaatgaaacggtaataaaacagtgtttggatgttgaagtgtctgtgtagtctgcacctcaaag |
118 |
Q |
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| T |
54251743 |
atagagtaaaagagacagatgtaaaggctgacaataaaaatgaaacggtaataaaacagtgtttggatgttgaagtgtctgtgtagtctgtacctcaaag |
54251842 |
T |
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| Q |
119 |
ggaccctccaaatttaaagcattactgactcaaatcctacaccattaggtgcatccctatttactgcaaaatattgtagaaacccaaagctcctcttctc |
218 |
Q |
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| T |
54251843 |
ggaccctccaaatttaaagcattactgactcaaatcctacaccattaggtgcatccctatttactgcaaaatattgtagaaacccaaagctcctcttctc |
54251942 |
T |
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| Q |
219 |
tccaacgaagaaaatgaaatgtctccttctttcccttttcttttccccctagaaatttggccttcaatccaagacaagacccaggcacaaaggtgaaaag |
318 |
Q |
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| T |
54251943 |
tccaacgaagaaaatgaaatgtctccttctttcctttttcttttccccctagaaatctggccttcaatccaagacaagacccaggcacaaaggtgaaaag |
54252042 |
T |
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| Q |
319 |
t |
319 |
Q |
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| T |
54252043 |
t |
54252043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 384 - 518
Target Start/End: Original strand, 54252083 - 54252217
Alignment:
| Q |
384 |
aacaaactgaattatggaataattatctaaaataccaataatttcaccaaatccaaaaatcatcaagcaaacacaataatgatcactatttcgtttacat |
483 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54252083 |
aacaaactgaattatggaataattatctaaaataccaataatttcaccaaatccaaaaatcatcaagcaaacacaataatgatcactatttcgtttacat |
54252182 |
T |
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| Q |
484 |
aaagcctaagatcaaacttcaaattcttcatttat |
518 |
Q |
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| T |
54252183 |
agagcctaagttcaaacttcaaattcttcatttat |
54252217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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