View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1711_low_12 (Length: 509)

Name: NF1711_low_12
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1711_low_12
NF1711_low_12
[»] chr6 (9 HSPs)
chr6 (9-374)||(23126855-23127220)
chr6 (409-493)||(23126736-23126820)
chr6 (279-343)||(32803107-32803170)
chr6 (280-347)||(23126766-23126832)
chr6 (19-65)||(5334566-5334612)
chr6 (49-126)||(5098646-5098723)
chr6 (19-71)||(5255865-5255917)
chr6 (90-124)||(5100520-5100554)
chr6 (19-71)||(5180533-5180585)
[»] chr3 (14 HSPs)
chr3 (22-115)||(47985068-47985161)
chr3 (22-115)||(47994355-47994448)
chr3 (22-115)||(48003642-48003735)
chr3 (22-115)||(48012927-48013020)
chr3 (279-347)||(54449761-54449828)
chr3 (409-464)||(25750944-25750999)
chr3 (279-347)||(46690571-46690638)
chr3 (409-464)||(30442388-30442443)
chr3 (415-466)||(54449913-54449964)
chr3 (409-463)||(54449762-54449816)
chr3 (422-463)||(19594485-19594526)
chr3 (420-460)||(19582270-19582310)
chr3 (279-347)||(19594613-19594680)
chr3 (411-463)||(50293587-50293639)
[»] chr5 (13 HSPs)
chr5 (279-347)||(38734606-38734673)
chr5 (409-460)||(41982586-41982637)
chr5 (413-465)||(4381657-4381709)
chr5 (279-347)||(4381785-4381852)
chr5 (280-344)||(41982444-41982507)
chr5 (283-347)||(41982574-41982637)
chr5 (279-322)||(2858118-2858161)
chr5 (409-464)||(41982443-41982498)
chr5 (422-463)||(2858119-2858160)
chr5 (279-322)||(2846297-2846340)
chr5 (282-348)||(2846432-2846497)
chr5 (422-463)||(2846298-2846339)
chr5 (409-461)||(2846445-2846497)
[»] chr1 (11 HSPs)
chr1 (280-347)||(8245357-8245423)
chr1 (409-467)||(8245353-8245411)
chr1 (279-347)||(42107095-42107162)
chr1 (280-347)||(8245486-8245552)
chr1 (409-460)||(23391867-23391918)
chr1 (280-347)||(23391983-23392049)
chr1 (409-464)||(23391995-23392050)
chr1 (280-347)||(42106964-42107030)
chr1 (409-463)||(42106964-42107018)
chr1 (409-454)||(1035358-1035403)
chr1 (422-466)||(2137586-2137630)
[»] chr7 (7 HSPs)
chr7 (415-465)||(9417265-9417315)
chr7 (422-463)||(8170198-8170239)
chr7 (280-321)||(9417272-9417313)
chr7 (280-341)||(29407675-29407735)
chr7 (421-465)||(29407673-29407717)
chr7 (280-347)||(8170198-8170264)
chr7 (409-464)||(38735969-38736024)
[»] chr8 (2 HSPs)
chr8 (279-347)||(39141950-39142017)
chr8 (409-462)||(6924255-6924308)
[»] scaffold1786 (3 HSPs)
scaffold1786 (409-460)||(1266-1317)
scaffold1786 (411-464)||(1132-1185)
scaffold1786 (280-347)||(1133-1199)
[»] scaffold1609 (1 HSPs)
scaffold1609 (409-460)||(14-65)
[»] chr2 (3 HSPs)
chr2 (280-347)||(6407870-6407936)
chr2 (280-347)||(6407999-6408065)
chr2 (413-463)||(6408015-6408065)


Alignment Details
Target: chr6 (Bit Score: 362; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 9 - 374
Target Start/End: Complemental strand, 23127220 - 23126855
Alignment:
Q  9 aattattctgcatttttggatgaagtttctagattttatgcatggtaaatttttgtaatcctaatgtcagttgaaatatcataatttgttctgttacaat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23127220 aattattctgcatttttggatgaagtttctagattttatgcatggtaaatttttgtaatcctaatgtcagttgaaatatcataatttgttctgttacaat 23127121  T
Q  109 tcttccatgacatatatatttagtctcttgcaggtaactttaattgtatctttgtcaaaaaatatttgtgtttggaatctcatagcagaaagaaaacgtt 208  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23127120 tcttccatgacacatatatttagtctcttgcaggtaactttaattgtatctttgtcaaaaaatatttgtgtttggaatctcatagcagaaagaaaacgtt 23127021  T
Q  209 gattttccgtcatagcaaacgtgatttcagttaaaaatgtaaatgaaaaaatttgaacagaactgtttacagagaaactcttctatatacacaactacaa 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23127020 gattttccgtcatagcaaacgtgatttcagttaaaaatgtaaatgaaaaaatttgaacagaactgtttacagagaaactcttctatatacacaactacaa 23126921  T
Q  309 atgataaatatttaagacacactcacatcaaatgtaaaataaaattaaacgatgttgattgatgtg 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23126920 atgataaatatttaagacacactcacatcaaatgtaaaataaaattaaacgatgttgattgatgtg 23126855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 409 - 493
Target Start/End: Complemental strand, 23126820 - 23126736
Alignment:
Q  409 tgtgagtgtgcccaaatatttatcatttgtgattgtgtctataaaagagtttctcctctttacaaccttgtctagcaaacttctt 493  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23126820 tgtgagtgtgcctaaatatttatcatttgtgattgtgtctatagaagagtttctcctctttacaaccttgtctagcaaacttctt 23126736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 279 - 343
Target Start/End: Complemental strand, 32803170 - 32803107
Alignment:
Q  279 agagaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgt 343  Q
    ||||||||||||||||  | ||||||||||||||||||||||| ||||||||||| |||||||||    
T  32803170 agagaaactcttctatcaatacaactacaaatgataaatattt-agacacactcatatcaaatgt 32803107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 23126766 - 23126832
Alignment:
Q  280 gagaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgtaaaa 347  Q
    |||||||||||||||| ||||||  ||||||||||||||||| || ||||||||||| ||||| ||||    
T  23126766 gagaaactcttctatagacacaatcacaaatgataaatattt-aggcacactcacataaaatggaaaa 23126832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 5334566 - 5334612
Alignment:
Q  19 catttttggatgaagtttctagattttatgcatggtaaatttttgta 65  Q
    ||||||||| ||||||||||||||||||| |||||| ||||||||||    
T  5334566 catttttggctgaagtttctagattttatccatggtgaatttttgta 5334612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 5098646 - 5098723
Alignment:
Q  49 catggtaaatttttgtaatcctaatgtcagttgaaatatcataatttgttctgttacaattcttccatgacatatata 126  Q
    |||||||||||| |||||||||||    || |||| |||  ||| |||||||||||||||||||||||| ||||||||    
T  5098646 catggtaaatttgtgtaatcctaaatagaggtgaactattgtaagttgttctgttacaattcttccatgtcatatata 5098723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 5255917 - 5255865
Alignment:
Q  19 catttttggatgaagtttctagattttatgcatggtaaatttttgtaatccta 71  Q
    ||||||||| ||||||||||||||||||| |||| ||| ||| ||||||||||    
T  5255917 catttttggctgaagtttctagattttatccatgctaagtttatgtaatccta 5255865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 124
Target Start/End: Complemental strand, 5100554 - 5100520
Alignment:
Q  90 taatttgttctgttacaattcttccatgacatata 124  Q
    |||||||||||||||||||||||||||| ||||||    
T  5100554 taatttgttctgttacaattcttccatgtcatata 5100520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 5180585 - 5180533
Alignment:
Q  19 catttttggatgaagtttctagattttatgcatggtaaatttttgtaatccta 71  Q
    |||||| || |||||||| |||||||||| |||| ||| ||||||||||||||    
T  5180585 cattttcggctgaagtttttagattttatccatgctaagtttttgtaatccta 5180533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 9e-22; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 47985161 - 47985068
Alignment:
Q  22 ttttggatgaagtttctagattttatgcatggtaaatttttgtaatcctaatgtcagttgaaatatcataatttgttctgttacaattcttcca 115  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||| |  || ||||| || | |||||||| ||||||||||||||||    
T  47985161 ttttggctgaagtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattcttcca 47985068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 47994448 - 47994355
Alignment:
Q  22 ttttggatgaagtttctagattttatgcatggtaaatttttgtaatcctaatgtcagttgaaatatcataatttgttctgttacaattcttcca 115  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||| |  || ||||| || | |||||||| ||||||||||||||||    
T  47994448 ttttggctgaagtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattcttcca 47994355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 48003735 - 48003642
Alignment:
Q  22 ttttggatgaagtttctagattttatgcatggtaaatttttgtaatcctaatgtcagttgaaatatcataatttgttctgttacaattcttcca 115  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||| |  || ||||| || | |||||||| ||||||||||||||||    
T  48003735 ttttggctgaagtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattcttcca 48003642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 48013020 - 48012927
Alignment:
Q  22 ttttggatgaagtttctagattttatgcatggtaaatttttgtaatcctaatgtcagttgaaatatcataatttgttctgttacaattcttcca 115  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||| |  || ||||| || | |||||||| ||||||||||||||||    
T  48013020 ttttggctgaagtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattcttcca 48012927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 347
Target Start/End: Original strand, 54449761 - 54449828
Alignment:
Q  279 agagaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgtaaaa 347  Q
    ||||||||||||||||| ||||||| | ||||||||||||||| ||||||| |||||| ||||| ||||    
T  54449761 agagaaactcttctatagacacaaccataaatgataaatattt-agacacattcacattaaatgcaaaa 54449828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 409 - 464
Target Start/End: Original strand, 25750944 - 25750999
Alignment:
Q  409 tgtgagtgtgcccaaatatttatcatttgtgattgtgtctataaaagagtttctcc 464  Q
    ||||| |||||  |||||||||||||||||||||||||||||| |||| |||||||    
T  25750944 tgtgaatgtgcttaaatatttatcatttgtgattgtgtctatacaagattttctcc 25750999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 347
Target Start/End: Original strand, 46690571 - 46690638
Alignment:
Q  279 agagaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgtaaaa 347  Q
    ||||||||||||||| ||| |||||  ||||||||||||||||||| |||| ||| |||||||| ||||    
T  46690571 agagaaactcttctacatatacaaccgcaaatgataaatatttaag-cacattcatatcaaatgaaaaa 46690638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 464
Target Start/End: Original strand, 30442388 - 30442443
Alignment:
Q  409 tgtgagtgtgcccaaatatttatcatttgtgattgtgtctataaaagagtttctcc 464  Q
    |||||||| | | |||||||||||||||||| ||||||||||||  ||||||||||    
T  30442388 tgtgagtgcggctaaatatttatcatttgtggttgtgtctataatggagtttctcc 30442443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 466
Target Start/End: Original strand, 54449913 - 54449964
Alignment:
Q  415 tgtgcccaaatatttatcatttgtgattgtgtctataaaagagtttctcctc 466  Q
    ||||||||||||||||||||||  ||||||||| ||| |||||||| |||||    
T  54449913 tgtgcccaaatatttatcatttacgattgtgtccatagaagagtttatcctc 54449964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 463
Target Start/End: Complemental strand, 54449816 - 54449762
Alignment:
Q  409 tgtgagtgtgcccaaatatttatcatttgtgattgtgtctataaaagagtttctc 463  Q
    ||||| |||| | ||||||||||||||| || ||||||||||| |||||||||||    
T  54449816 tgtgaatgtgtctaaatatttatcatttatggttgtgtctatagaagagtttctc 54449762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 463
Target Start/End: Complemental strand, 19594526 - 19594485
Alignment:
Q  422 aaatatttatcatttgtgattgtgtctataaaagagtttctc 463  Q
    |||||||||||||||||||||||||  ||| |||||||||||    
T  19594526 aaatatttatcatttgtgattgtgttcatataagagtttctc 19594485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 460
Target Start/End: Complemental strand, 19582310 - 19582270
Alignment:
Q  420 ccaaatatttatcatttgtgattgtgtctataaaagagttt 460  Q
    ||||||||||||||||||||||| |||| ||| ||||||||    
T  19582310 ccaaatatttatcatttgtgattttgtccatataagagttt 19582270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 347
Target Start/End: Complemental strand, 19594680 - 19594613
Alignment:
Q  279 agagaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgtaaaa 347  Q
    ||||||| ||||||||| | ||||||  ||||||||||||||| ||||||| | |||||||| ||||||    
T  19594680 agagaaattcttctatagaaacaactttaaatgataaatattt-agacacatttacatcaaaagtaaaa 19594613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 463
Target Start/End: Complemental strand, 50293639 - 50293587
Alignment:
Q  411 tgagtgtgcccaaatatttatcatttgtgattgtgtctataaaagagtttctc 463  Q
    ||||||| ||| ||||||||||||||||| |||||| |||  |||||||||||    
T  50293639 tgagtgtacccgaatatttatcatttgtgcttgtgtttatggaagagtttctc 50293587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 279 - 347
Target Start/End: Original strand, 38734606 - 38734673
Alignment:
Q  279 agagaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgtaaaa 347  Q
    ||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||| ||||    
T  38734606 agagaaactcttctataaacacaactataaatgataaatattt-agacacactcacatcaaatgcaaaa 38734673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 409 - 460
Target Start/End: Original strand, 41982586 - 41982637
Alignment:
Q  409 tgtgagtgtgcccaaatatttatcatttgtgattgtgtctataaaagagttt 460  Q
    ||||||||||||||||||||||||||||||  ||||||||||| ||||||||    
T  41982586 tgtgagtgtgcccaaatatttatcatttgtatttgtgtctatagaagagttt 41982637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 413 - 465
Target Start/End: Complemental strand, 4381709 - 4381657
Alignment:
Q  413 agtgtgcccaaatatttatcatttgtgattgtgtctataaaagagtttctcct 465  Q
    ||||||||||||||||||||||||||| || ||| |||||||| |||||||||    
T  4381709 agtgtgcccaaatatttatcatttgtggttatgtttataaaagtgtttctcct 4381657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 347
Target Start/End: Complemental strand, 4381852 - 4381785
Alignment:
Q  279 agagaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgtaaaa 347  Q
    ||||||||| || ||||  |||||||||||||||||||||||| ||| |||||||||||||||| ||||    
T  4381852 agagaaactattttataggcacaactacaaatgataaatattt-agatacactcacatcaaatgcaaaa 4381785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 344
Target Start/End: Original strand, 41982444 - 41982507
Alignment:
Q  280 gagaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgta 344  Q
    ||||||||||| |||| | |||| |||||||||||||||||| |||||||||||||| |||||||    
T  41982444 gagaaactcttttatagatacaaatacaaatgataaatattt-agacacactcacattaaatgta 41982507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 41982637 - 41982574
Alignment:
Q  283 aaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgtaaaa 347  Q
    ||||||||||||| |||||| ||||||||||||||||||  | ||||||||||||||||| ||||    
T  41982637 aaactcttctatagacacaaatacaaatgataaatattt-gggcacactcacatcaaatgaaaaa 41982574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 279 - 322
Target Start/End: Original strand, 2858118 - 2858161
Alignment:
Q  279 agagaaactcttctatatacacaactacaaatgataaatattta 322  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||    
T  2858118 agagaaactcttctatagacacaaccacaaatgataaatattta 2858161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 409 - 464
Target Start/End: Complemental strand, 41982498 - 41982443
Alignment:
Q  409 tgtgagtgtgcccaaatatttatcatttgtgattgtgtctataaaagagtttctcc 464  Q
    |||||||||| | |||||||||||||||||  |||| |||||||||||||||||||    
T  41982498 tgtgagtgtgtctaaatatttatcatttgtatttgtatctataaaagagtttctcc 41982443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 422 - 463
Target Start/End: Complemental strand, 2858160 - 2858119
Alignment:
Q  422 aaatatttatcatttgtgattgtgtctataaaagagtttctc 463  Q
    |||||||||||||||||| ||||||||||| |||||||||||    
T  2858160 aaatatttatcatttgtggttgtgtctatagaagagtttctc 2858119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 322
Target Start/End: Original strand, 2846297 - 2846340
Alignment:
Q  279 agagaaactcttctatatacacaactacaaatgataaatattta 322  Q
    |||||||||||||||||  |||||| ||||||||||||||||||    
T  2846297 agagaaactcttctataggcacaaccacaaatgataaatattta 2846340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 282 - 348
Target Start/End: Complemental strand, 2846497 - 2846432
Alignment:
Q  282 gaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgtaaaat 348  Q
    |||||||||||||  ||||||  |||||||||||||||||  ||| ||||||||||||||| |||||    
T  2846497 gaaactcttctatgaacacaagcacaaatgataaatattt-ggacgcactcacatcaaatggaaaat 2846432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 463
Target Start/End: Complemental strand, 2846339 - 2846298
Alignment:
Q  422 aaatatttatcatttgtgattgtgtctataaaagagtttctc 463  Q
    |||||||||||||||||| ||||| ||||| |||||||||||    
T  2846339 aaatatttatcatttgtggttgtgcctatagaagagtttctc 2846298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 461
Target Start/End: Original strand, 2846445 - 2846497
Alignment:
Q  409 tgtgagtgtgcccaaatatttatcatttgtgattgtgtctataaaagagtttc 461  Q
    |||||||| | |||||||||||||||||||| ||||||  ||| |||||||||    
T  2846445 tgtgagtgcgtccaaatatttatcatttgtgcttgtgttcatagaagagtttc 2846497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 8245357 - 8245423
Alignment:
Q  280 gagaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgtaaaa 347  Q
    |||||||||||||||| |||||| |||||||||||||||||| || ||||||||||||||||| ||||    
T  8245357 gagaaactcttctataaacacaattacaaatgataaatattt-aggcacactcacatcaaatgcaaaa 8245423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 409 - 467
Target Start/End: Complemental strand, 8245411 - 8245353
Alignment:
Q  409 tgtgagtgtgcccaaatatttatcatttgtgattgtgtctataaaagagtttctcctct 467  Q
    |||||||||||| ||||||||||||||||| ||||||| |||| |||||||||||||||    
T  8245411 tgtgagtgtgcctaaatatttatcatttgtaattgtgtttatagaagagtttctcctct 8245353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 279 - 347
Target Start/End: Complemental strand, 42107162 - 42107095
Alignment:
Q  279 agagaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgtaaaa 347  Q
    |||||||||||||| || ||||||||||||||||||||||||| | ||||||||| |||||||| ||||    
T  42107162 agagaaactcttctttaaacacaactacaaatgataaatattt-acacacactcatatcaaatgcaaaa 42107095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 8245552 - 8245486
Alignment:
Q  280 gagaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgtaaaa 347  Q
    |||||||||||||||  ||||||||| ||||||||||||||| ||| |||||||||||||||| ||||    
T  8245552 gagaaactcttctatggacacaactataaatgataaatattt-agaaacactcacatcaaatggaaaa 8245486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 409 - 460
Target Start/End: Complemental strand, 23391918 - 23391867
Alignment:
Q  409 tgtgagtgtgcccaaatatttatcatttgtgattgtgtctataaaagagttt 460  Q
    ||||||||| ||||||||||||||||||||| ||||||| ||| ||||||||    
T  23391918 tgtgagtgtccccaaatatttatcatttgtggttgtgtccatataagagttt 23391867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 23392049 - 23391983
Alignment:
Q  280 gagaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgtaaaa 347  Q
    |||||||||||||||| ||||||  | ||||||||| ||||| |||||||||||||||||||| ||||    
T  23392049 gagaaactcttctatagacacaatcataaatgataactattt-agacacactcacatcaaatgcaaaa 23391983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 409 - 464
Target Start/End: Original strand, 23391995 - 23392050
Alignment:
Q  409 tgtgagtgtgcccaaatatttatcatttgtgattgtgtctataaaagagtttctcc 464  Q
    |||||||||| | ||||| ||||||||| |||||||||||||| ||||||||||||    
T  23391995 tgtgagtgtgtctaaatagttatcatttatgattgtgtctatagaagagtttctcc 23392050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 42106964 - 42107030
Alignment:
Q  280 gagaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgtaaaa 347  Q
    |||||||||||||||  || |||| |||||||||||||||||  ||||||||||||||||||| ||||    
T  42106964 gagaaactcttctatggactcaaccacaaatgataaatattt-ggacacactcacatcaaatggaaaa 42107030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 409 - 463
Target Start/End: Complemental strand, 42107018 - 42106964
Alignment:
Q  409 tgtgagtgtgcccaaatatttatcatttgtgattgtgtctataaaagagtttctc 463  Q
    |||||||||| |||||||||||||||||||| ||| ||| ||| |||||||||||    
T  42107018 tgtgagtgtgtccaaatatttatcatttgtggttgagtccatagaagagtttctc 42106964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 409 - 454
Target Start/End: Complemental strand, 1035403 - 1035358
Alignment:
Q  409 tgtgagtgtgcccaaatatttatcatttgtgattgtgtctataaaa 454  Q
    ||||||||| | ||||||||||||||||||||||||||||| ||||    
T  1035403 tgtgagtgtactcaaatatttatcatttgtgattgtgtctacaaaa 1035358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 466
Target Start/End: Complemental strand, 2137630 - 2137586
Alignment:
Q  422 aaatatttatcatttgtgattgtgtctataaaagagtttctcctc 466  Q
    ||||||||||||||| ||||||||| |||| |||||| |||||||    
T  2137630 aaatatttatcatttatgattgtgtttatagaagagtctctcctc 2137586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 415 - 465
Target Start/End: Original strand, 9417265 - 9417315
Alignment:
Q  415 tgtgcccaaatatttatcatttgtgattgtgtctataaaagagtttctcct 465  Q
    ||||||||||||||||||||||||| |||||| |||| |||||||||||||    
T  9417265 tgtgcccaaatatttatcatttgtggttgtgtttatagaagagtttctcct 9417315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 422 - 463
Target Start/End: Complemental strand, 8170239 - 8170198
Alignment:
Q  422 aaatatttatcatttgtgattgtgtctataaaagagtttctc 463  Q
    |||||||||||||||||||||||||||||| |||| ||||||    
T  8170239 aaatatttatcatttgtgattgtgtctatagaagactttctc 8170198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 280 - 321
Target Start/End: Complemental strand, 9417313 - 9417272
Alignment:
Q  280 gagaaactcttctatatacacaactacaaatgataaatattt 321  Q
    |||||||||||||||| ||||||| |||||||||||||||||    
T  9417313 gagaaactcttctataaacacaaccacaaatgataaatattt 9417272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 280 - 341
Target Start/End: Original strand, 29407675 - 29407735
Alignment:
Q  280 gagaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaat 341  Q
    |||||||||||||||| | ||||| ||||||||||||||||| | ||||| |||||||||||    
T  29407675 gagaaactcttctatagatacaaccacaaatgataaatatttga-acacattcacatcaaat 29407735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 421 - 465
Target Start/End: Complemental strand, 29407717 - 29407673
Alignment:
Q  421 caaatatttatcatttgtgattgtgtctataaaagagtttctcct 465  Q
    ||||||||||||||||||| |||| |||||| |||||||||||||    
T  29407717 caaatatttatcatttgtggttgtatctatagaagagtttctcct 29407673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 8170198 - 8170264
Alignment:
Q  280 gagaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgtaaaa 347  Q
    |||||| ||||||||| ||||||  ||||||||||||||||| ||| | ||||||||||||| |||||    
T  8170198 gagaaagtcttctatagacacaatcacaaatgataaatattt-agatatactcacatcaaatataaaa 8170264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 464
Target Start/End: Original strand, 38735969 - 38736024
Alignment:
Q  409 tgtgagtgtgcccaaatatttatcatttgtgattgtgtctataaaagagtttctcc 464  Q
    ||||| ||||||||| ||||||||||||||| ||||||  ||| ||||||||||||    
T  38735969 tgtgattgtgcccaagtatttatcatttgtggttgtgttcatagaagagtttctcc 38736024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 347
Target Start/End: Complemental strand, 39142017 - 39141950
Alignment:
Q  279 agagaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgtaaaa 347  Q
    ||||||||||||||||| |||  |||||||||||||||||||||| ||| | |||||||||||| ||||    
T  39142017 agagaaactcttctatagacatgactacaaatgataaatatttaa-acatattcacatcaaatgcaaaa 39141950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 462
Target Start/End: Original strand, 6924255 - 6924308
Alignment:
Q  409 tgtgagtgtgcccaaatatttatcatttgtgattgtgtctataaaagagtttct 462  Q
    |||||||||||||||||||||||  |||||| |||| | |||| ||||||||||    
T  6924255 tgtgagtgtgcccaaatatttatactttgtggttgtatttatataagagtttct 6924308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1786 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: scaffold1786
Description:

Target: scaffold1786; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 409 - 460
Target Start/End: Original strand, 1266 - 1317
Alignment:
Q  409 tgtgagtgtgcccaaatatttatcatttgtgattgtgtctataaaagagttt 460  Q
    ||||||||| ||||||||||||||||||||| ||||||| ||| ||||||||    
T  1266 tgtgagtgtccccaaatatttatcatttgtggttgtgtccatataagagttt 1317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1786; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 411 - 464
Target Start/End: Complemental strand, 1185 - 1132
Alignment:
Q  411 tgagtgtgcccaaatatttatcatttgtgattgtgtctataaaagagtttctcc 464  Q
    |||||||| | ||||| ||||||||| |||||||||||||| ||||||||||||    
T  1185 tgagtgtgtctaaatagttatcatttatgattgtgtctatagaagagtttctcc 1132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1786; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 1133 - 1199
Alignment:
Q  280 gagaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgtaaaa 347  Q
    |||||||||||||||| ||||||  | ||||||||| ||||| ||||||||||| |||||||| ||||    
T  1133 gagaaactcttctatagacacaatcataaatgataactattt-agacacactcatatcaaatgcaaaa 1199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1609 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold1609
Description:

Target: scaffold1609; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 409 - 460
Target Start/End: Original strand, 14 - 65
Alignment:
Q  409 tgtgagtgtgcccaaatatttatcatttgtgattgtgtctataaaagagttt 460  Q
    ||||||||| ||||||||||||||||||||| ||||||| ||| ||||||||    
T  14 tgtgagtgtccccaaatatttatcatttgtggttgtgtccatataagagttt 65  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 6407870 - 6407936
Alignment:
Q  280 gagaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgtaaaa 347  Q
    |||||||||||||||  ||||||||| ||||||||||||||| ||| ||| |||||||||||| ||||    
T  6407870 gagaaactcttctatggacacaactataaatgataaatattt-agaaacattcacatcaaatggaaaa 6407936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 6408065 - 6407999
Alignment:
Q  280 gagaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgtaaaa 347  Q
    ||||||||||| |||| ||| || |||||||||||||||||| ||||||||| |||||||||| ||||    
T  6408065 gagaaactcttttataaacataattacaaatgataaatattt-agacacacttacatcaaatgcaaaa 6407999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 463
Target Start/End: Original strand, 6408015 - 6408065
Alignment:
Q  413 agtgtgcccaaatatttatcatttgtgattgtgtctataaaagagtttctc 463  Q
    |||||| | ||||||||||||||||| ||| ||| ||||||||||||||||    
T  6408015 agtgtgtctaaatatttatcatttgtaattatgtttataaaagagtttctc 6408065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 14230 times since January 2019
Visitors: 8375