View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_low_15 (Length: 488)
Name: NF1711_low_15
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 198 - 445
Target Start/End: Complemental strand, 8355761 - 8355517
Alignment:
| Q |
198 |
gttttatgagctggaataactaaataaaaatcgttgaatcaatgtcttgaatttcttcatatatgccaaaacaaaggcgattaccaattcatagtataat |
297 |
Q |
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| T |
8355761 |
gttttatgagctggaataactaaataaaaatcgttgaatcaatgtcttgaatttcttcatatatgccaaaacaaaggcgattaccaattcatagtataat |
8355662 |
T |
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| Q |
298 |
tccccgattaaaattctctatccaaacacactcttagtgtagtttttattctgatcttagtataatttctcttctatttaggaacatcccaaaagttgtt |
397 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8355661 |
tccccgattaaaattctctatccaaacacacttttagtgtagtttttattc---tcttagtataatttctcttctatttaggaacatcccaaaagttgtt |
8355565 |
T |
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| Q |
398 |
cataacaaagtcactatctttccagactagtggtggcgatctggaaca |
445 |
Q |
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| T |
8355564 |
cataacaaactcactatctttccagactagtggtggcgatctggaaca |
8355517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 306 - 474
Target Start/End: Original strand, 8482621 - 8482788
Alignment:
| Q |
306 |
taaaattctctatccaaacacactcttagtgtagtttttattctgatcttagtataatttctcttctatttaggaacatcccaaaagttgttcataacaa |
405 |
Q |
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|||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8482621 |
taaaattctctatccaaacacact--tagaggagtttttattctgatcttagtataatttctcttctatttaggaacatcccaaaagttgttcataacaa |
8482718 |
T |
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| Q |
406 |
agtcac-tatctttccagactagtggtggcgatctggaacattggaaatactttgtactcatgatgatgt |
474 |
Q |
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| T |
8482719 |
actcacttatctttccagactagtggtggtgatctggaacattggaaatactttgtacttatgatgatgt |
8482788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 43 - 202
Target Start/End: Complemental strand, 8355941 - 8355782
Alignment:
| Q |
43 |
aaatggattatattatttttatagaatttataagatggtagatcaactaaacttaaatagatcacttctccacatcagcatttcccgcttgcctgcctac |
142 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8355941 |
aaatggattatattatttttgtagaatttataagatggtagatcaactaaactgaaatagatcacttctccacatcagcatttcccgcttgcctgcctac |
8355842 |
T |
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| Q |
143 |
atgggannnnnnnctttccgtcaccctattagttactttcaaattcaaaaaagttgtttt |
202 |
Q |
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| T |
8355841 |
atgggatttttttcgttccgtcaccctattagttactttcaaattcaaaaaagttgtttt |
8355782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 403
Target Start/End: Complemental strand, 37486059 - 37485994
Alignment:
| Q |
335 |
tgtagtttttattctgatcttagtataatttctcttctatttaggaacatcccaaaagttgttcataac |
403 |
Q |
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||||||||||||||| ||||| ||| ||||||||| ||||| ||||| ||||||||||||||||||| |
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| T |
37486059 |
tgtagtttttattct---cttagcatagtttctcttccatttatgaacaacccaaaagttgttcataac |
37485994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 406
Target Start/End: Original strand, 36866296 - 36866344
Alignment:
| Q |
358 |
tataatttctcttctatttaggaacatcccaaaagttgttcataacaaa |
406 |
Q |
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| T |
36866296 |
tataatttctctttcatttatgaacaaccaaaaagttgttcataacaaa |
36866344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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