View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1711_low_17 (Length: 463)

Name: NF1711_low_17
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1711_low_17
NF1711_low_17
[»] chr1 (2 HSPs)
chr1 (1-441)||(45922979-45923417)
chr1 (301-352)||(45922293-45922344)
[»] chr7 (8 HSPs)
chr7 (297-352)||(42607137-42607192)
chr7 (300-352)||(44541047-44541099)
chr7 (297-352)||(40257636-40257691)
chr7 (297-352)||(6730095-6730150)
chr7 (305-352)||(6729462-6729509)
chr7 (241-288)||(36845203-36845250)
chr7 (297-344)||(40257747-40257794)
chr7 (305-352)||(42607750-42607797)
[»] chr8 (2 HSPs)
chr8 (297-352)||(35943132-35943187)
chr8 (305-352)||(35943776-35943823)
[»] chr2 (2 HSPs)
chr2 (240-288)||(28030249-28030297)
chr2 (237-269)||(38739880-38739912)


Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 45923417 - 45922979
Alignment:
Q  1 taattcttgtgtttgaagaaaatattaagagtgttgataagtcgctttaaaactgttgaggcatatgaatatggttaacaggttaagacaatttgtgagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45923417 taattcttgtgtttgaagaaaatattaagagtgttgataagtcgctttaaaactgttgaggcatatgaatatggttaacaggttaagacaatttgtgagt 45923318  T
Q  101 ctcttttgaactggtcacaggagactcataaaaatgatacaagattttcagtacaaacaatgcgaagcatccctgggaaaaaattatcgaccaaccaaag 200  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  45923317 ctcttttgaactggtcacaggagactca--aaaatgatacaagattttcagtacaaacaatgcgaagcatccctggtaaaaaattatcgaccaaccaaag 45923220  T
Q  201 ggatattccacacaatctttcaaaaatcgatttcaattggggtgaggtttagcatgggatagggaaattatttttcatcatggaaaagnnnnnnnngtcc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||        ||||    
T  45923219 ggatattccacacaatctttcaaaaatcgatttcaattggggtgaggtttagcatgggatagggaaattgttttccaccatggaaaagttttttttgtcc 45923120  T
Q  301 attagatcaaacaagaaacacaatcttatcatggtctatcaacacttgattannnnnnngctttatcttccactacatttctcttctctctccaccataa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  45923119 attagatcaaacaagaaacacaatcttatcatggtctatcaacacttgattatttttttgctttatcttccactacatttctcttctctctccaccataa 45923020  T
Q  401 aagctgaaatcccttttctatagctgaagttgttaaatcca 441  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  45923019 aagcttaaatcccttttctatagctgaagttgttaaatcca 45922979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 301 - 352
Target Start/End: Original strand, 45922293 - 45922344
Alignment:
Q  301 attagatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45922293 attagatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta 45922344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 297 - 352
Target Start/End: Original strand, 42607137 - 42607192
Alignment:
Q  297 gtccattagatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta 352  Q
    |||||||||||||||  |||||||||||||||||||| ||||||||||||||||||    
T  42607137 gtccattagatcaaatgagaaacacaatcttatcatgatctatcaacacttgatta 42607192  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 300 - 352
Target Start/End: Original strand, 44541047 - 44541099
Alignment:
Q  300 cattagatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta 352  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||| ||||    
T  44541047 cattagatcaaataagaaacacaatcttatcatggcctatcaacacttaatta 44541099  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 297 - 352
Target Start/End: Original strand, 40257636 - 40257691
Alignment:
Q  297 gtccattagatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta 352  Q
    |||||||||||||||  ||||||||| |||||||||| ||||||||||||||||||    
T  40257636 gtccattagatcaaatgagaaacacattcttatcatgatctatcaacacttgatta 40257691  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 352
Target Start/End: Complemental strand, 6730150 - 6730095
Alignment:
Q  297 gtccattagatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta 352  Q
    ||||||| |||||||  |||||||||||||||||||||||||| |||| |||||||    
T  6730150 gtccattggatcaaatgagaaacacaatcttatcatggtctataaacatttgatta 6730095  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 6729462 - 6729509
Alignment:
Q  305 gatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta 352  Q
    |||||||  |||||||||||||||||||||| ||||||||||| ||||    
T  6729462 gatcaaatgagaaacacaatcttatcatggtttatcaacacttaatta 6729509  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 288
Target Start/End: Complemental strand, 36845250 - 36845203
Alignment:
Q  241 ggtgaggtttagcatgggatagggaaattatttttcatcatggaaaag 288  Q
    ||||||||||||||||||| |||| |||| ||| ||||||||||||||    
T  36845250 ggtgaggtttagcatgggaaaggggaattgtttctcatcatggaaaag 36845203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 344
Target Start/End: Complemental strand, 40257794 - 40257747
Alignment:
Q  297 gtccattagatcaaacaagaaacacaatcttatcatggtctatcaaca 344  Q
    |||||||||||||||  ||||||||| |||||||||| ||||||||||    
T  40257794 gtccattagatcaaatgagaaacacattcttatcatgatctatcaaca 40257747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 42607797 - 42607750
Alignment:
Q  305 gatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta 352  Q
    |||||||  |||||||||||||||||||  ||||||||||||||||||    
T  42607797 gatcaaatgagaaacacaatcttatcataatctatcaacacttgatta 42607750  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 297 - 352
Target Start/End: Original strand, 35943132 - 35943187
Alignment:
Q  297 gtccattagatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta 352  Q
    |||||||  ||||||  |||||||||||||||||||||||||||||||||||||||    
T  35943132 gtccattgaatcaaatgagaaacacaatcttatcatggtctatcaacacttgatta 35943187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 35943823 - 35943776
Alignment:
Q  305 gatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta 352  Q
    |||||||  |||||||||||||||||||||| ||||||||||| ||||    
T  35943823 gatcaaatgagaaacacaatcttatcatggtttatcaacacttaatta 35943776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 28030249 - 28030297
Alignment:
Q  240 gggtgaggtttagcatgggatagggaaattatttttcatcatggaaaag 288  Q
    |||||||||||||||||||| ||| ||| |||||||||| |||| ||||    
T  28030249 gggtgaggtttagcatgggaaaggaaaaatatttttcatgatgggaaag 28030297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 269
Target Start/End: Complemental strand, 38739912 - 38739880
Alignment:
Q  237 ttggggtgaggtttagcatgggatagggaaatt 269  Q
    ||||||||||||||||||||||| |||||||||    
T  38739912 ttggggtgaggtttagcatgggaaagggaaatt 38739880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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