View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_low_24 (Length: 413)
Name: NF1711_low_24
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_low_24 |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 16 - 398
Target Start/End: Original strand, 41469858 - 41470240
Alignment:
| Q |
16 |
atctgcagaagggtcaagaagataattacatcgagagaaataagcaatattttcagacgggccatgtaatttcttttagctcttcggatttatggtagca |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41469858 |
atctgcagaagggtcaagaagataattacatcgagagaaataagcaatattttcagacgggccatgtaatttcttttagctcttcggatttatggtagca |
41469957 |
T |
|
| Q |
116 |
atgctaaatgagtaattatctctttttaacgctctcttgaacacactttttctgataggtctacttcttaaaatctcaacacattttttgaaagtcatca |
215 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41469958 |
atgctaaatgagtaattatctctttttaatgctctcttgaacacactttttctgataggtctacttcttaaaatcccaacacattttttgaaagtcatca |
41470057 |
T |
|
| Q |
216 |
ttttatagaactaaatcggcttctttaaaagtggaccaatcacaaaaagtattgtttattgaagttgtttggagtttcttaggagtcccacattgctcag |
315 |
Q |
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|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41470058 |
ttttacagaactaaatcggcttctttaaaagtggaccaatcacaaaaagtattgtttattgaagttgtttggagtttcttaggagtcccacgttgctcag |
41470157 |
T |
|
| Q |
316 |
gttctcaggatgttgggtgtatcaatctgcctggacaccctcatcctttgaactagcttttgagatgagatccaagtccattt |
398 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41470158 |
gttctcaggatgttgggtgtataaatctgcctggacaccctcatcctttgaactagcttttgagatgagatccaagtccattt |
41470240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 16 - 265
Target Start/End: Original strand, 41476870 - 41477123
Alignment:
| Q |
16 |
atctgcagaagggtcaagaagataattacatcgagagaaataagcaatattttcagacgggccatgtaatttcttttagctcttcggatttatggtagca |
115 |
Q |
| |
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||||||||||| |||||| ||||||| || |||||||| |||| |||| || ||| | ||||||| | |||| |||||| | |||||||||||| |
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| T |
41476870 |
atctgcagaagcgtcaagcagataatctcaatgagagaaacaagctatatcttgagaagaaaaatgtaatgtattttggctctttgagtttatggtagca |
41476969 |
T |
|
| Q |
116 |
atgctaaatgagtaattatctctttttaacgctctcttgaacacactttttctgataggtctacttcttaaaatctcaacacatt-ttttgaaagtcatc |
214 |
Q |
| |
|
||||||||||| ||||| |||| ||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||| ||| |
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| T |
41476970 |
atgctaaatgaataattctctccttttaaccctctcttgaacacactttttctgataggtctatttcttaaaaatataacacattactttgaaagtgatc |
41477069 |
T |
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| Q |
215 |
atttta---tagaactaaatcggcttctttaaaagtggaccaatcacaaaaagt |
265 |
Q |
| |
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| |||| |||||||||| |||||||||||| ||||||||||||||||||| |
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|
| T |
41477070 |
aatttacaggagaactaaatttgcttctttaaaaatggaccaatcacaaaaagt |
41477123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 103 - 271
Target Start/End: Original strand, 41484000 - 41484170
Alignment:
| Q |
103 |
atttatggtagcaatgctaaatgagtaattatctctttttaacgctctcttgaacacactttttctgataggtctacttcttaaaatctcaacacattt- |
201 |
Q |
| |
|
||||||| |||||||||||||||| | ||| |||| ||||||| ||||| ||||||||| |||| ||||||||| | ||| |||||| | ||||||||| |
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| T |
41484000 |
atttatgatagcaatgctaaatgaattattctctccttttaaccctctcatgaacacac-ttttgtgataggtcaatttc-taaaattttaacacatttc |
41484097 |
T |
|
| Q |
202 |
tttgaaagtcatcatttta---tagaactaaatcggcttctttaaaagtggaccaatcacaaaaagtattgtt |
271 |
Q |
| |
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||||||||| |||| |||| |||||||||| |||||||||||| ||||||||||||||||||| ||||| |
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| T |
41484098 |
tttgaaagtgatcaatttacaggagaactaaatttgcttctttaaaaatggaccaatcacaaaaagtgttgtt |
41484170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 7 - 271
Target Start/End: Original strand, 40751110 - 40751384
Alignment:
| Q |
7 |
gtgagatgaatctgcagaagggtcaagaagataattacatcgagagaaataagcaatattttcagacgggccatgtaatttcttttagctcttcggattt |
106 |
Q |
| |
|
|||||| | |||| |||||| |||||| ||||||| ||| ||||||| |||| ||||||| ||| | |||||||| | |||| |||||| | |||| |
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| T |
40751110 |
gtgagaaggatctacagaagcgtcaagcagataatcacaatgagagaaccaagctatattttgagaagaaacatgtaatgtattttggctctttgaattt |
40751209 |
T |
|
| Q |
107 |
atggtagcaatgctaaatgagtaattatctctttttaa-------cgctctcttgaacacactttttc-tgataggtctacttcttaaaatctcaacaca |
198 |
Q |
| |
|
||||||||||||||| |||| ||||| |||| |||||| | ||||||| ||||||||||||| |||||| ||| |||| ||||| | |||||| |
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| T |
40751210 |
atggtagcaatgctagatgaataattctctccttttaagttttaaccctctcttaaacacactttttcctgatag-tctgtttct-aaaattttaacaca |
40751307 |
T |
|
| Q |
199 |
ttt-tttgaaagtcatcattttatag---aactaaatcggcttctttaaaagtggaccaatcacaaaaagtattgtt |
271 |
Q |
| |
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||| ||||||||| |||| |||| || |||||||| ||||||||||||| ||||||||||||||||||| ||||| |
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| T |
40751308 |
tttctttgaaagtgatcaatttacaggagaactaaattggcttctttaaaaatggaccaatcacaaaaagtgttgtt |
40751384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 184; Significance: 2e-99; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 16 - 393
Target Start/End: Complemental strand, 16413343 - 16412980
Alignment:
| Q |
16 |
atctgcagaagggtcaagaagataattacatcgagagaaataagcaatattttcagacgggccatgtaatttcttttagctcttcggatttatggtagca |
115 |
Q |
| |
|
||||||||||| | |||||||||||| |||| | ||||||||||| ||||||||| || |||||||||| ||||||||||| | ||||||||||||| |
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|
| T |
16413343 |
atctgcagaagcgacaagaagataatcacattgtgagaaataagctatattttcaaacaaaacatgtaatttattttagctctttgaatttatggtagca |
16413244 |
T |
|
| Q |
116 |
atgctaaatgagtaattatctctttttaacgctctcttgaacacactttttctgataggtctacttcttaaaatctcaacacattttttgaaagtcatca |
215 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| ||||||||||| |||||||||||| | ||||||||||||||||||||| |
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|
| T |
16413243 |
atgctaaa-gagtaatt--------------ctctcttgaacacactttttttgataggtctatttcttaaaatcttagcacattttttgaaagtcatca |
16413159 |
T |
|
| Q |
216 |
t-tttatagaactaaatcggcttctttaaaagtggaccaatcacaaaaagtattgtttattgaagttgtttggagtttcttaggagtcccacattgctca |
314 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||| |
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|
| T |
16413158 |
aatttacagaactaaatcggcttctttaaaagtggaccaatcacaaaaagtgttgtttattgaggttgtctggagtttcttaggagtcccccattgctca |
16413059 |
T |
|
| Q |
315 |
ggttctcaggatgttgggtgtatcaatctgcctggacaccctcatcctttgaactagcttttgagatgagatccaagtc |
393 |
Q |
| |
|
| |||||||||||||| |||||| ||| ||| |||| | ||||||||||||| || ||||||||||||||||||||||| |
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|
| T |
16413058 |
gtttctcaggatgttgagtgtataaatgtgcttggatatcctcatcctttgagctggcttttgagatgagatccaagtc |
16412980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 386
Target Start/End: Complemental strand, 54137210 - 54137101
Alignment:
| Q |
277 |
aagttgtttggagtttcttaggagtcccacattgctcaggttctcaggatgttgggtgtatcaatctgcctggacaccctcatcctttgaactagctttt |
376 |
Q |
| |
|
|||||||||| ||||| || ||| ||| | |||||||||||| ||| ||||| |||||| |||||| ||| |||||||| ||||||| |||||||| |
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|
| T |
54137210 |
aagttgtttgtagtttgtttggactcctaaattgctcaggtttctaggttgttgagtgtataaatctgtttgggcaccctcaccctttgagatagctttt |
54137111 |
T |
|
| Q |
377 |
gagatgagat |
386 |
Q |
| |
|
|| ||||||| |
|
|
| T |
54137110 |
gatatgagat |
54137101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 337
Target Start/End: Complemental strand, 23564400 - 23564337
Alignment:
| Q |
274 |
ttgaagttgtttggagtttcttaggagtcccacattgctcaggttctcaggatgttgggtgtat |
337 |
Q |
| |
|
||||||||||||| ||||| ||| ||||||||||||||||||| ||||| ||||| |||||| |
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|
| T |
23564400 |
ttgaagttgtttgtagtttgttatttgtcccacattgctcaggttttcaggttgttgagtgtat |
23564337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 16408839 - 16408800
Alignment:
| Q |
134 |
tctctttttaacgctctcttgaacacactttttctgataggt |
175 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
16408839 |
tctctttttaac--tctcttgaacacactttttctgataggt |
16408800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 52471991 - 52472101
Alignment:
| Q |
7 |
gtgagatgaatctgcagaagggtcaagaagataattacatcgagagaaataagcaatattttcagacgggccatgtaatttcttttagctcttcggattt |
106 |
Q |
| |
|
|||| ||| ||||||||||| |||||| ||||||| ||| ||||| ||||||| |||| || ||| | || ||||||| |||| |||||||| ||| |
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|
| T |
52471991 |
gtgaaatggatctgcagaagcgtcaagtagataatgacaatgagagcaataagctatatcttgagaggaaacaggtaatttattttggctcttcgatttt |
52472090 |
T |
|
| Q |
107 |
atggtagcaat |
117 |
Q |
| |
|
||||||||||| |
|
|
| T |
52472091 |
atggtagcaat |
52472101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 398
Target Start/End: Complemental strand, 36496336 - 36496235
Alignment:
| Q |
297 |
ggagtcccacattgctcaggttctcaggatgttgggtgtatcaatctgcctggacaccctcatcctttgaactagcttttgagatgagatccaagtccat |
396 |
Q |
| |
|
||||||| | ||||||||||||| | || |||||| ||||| |||||| | | ||||||||||| |||| |||||||||| |||||||| |||| |||| |
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|
| T |
36496336 |
ggagtcctaaattgctcaggttccccggctgttggatgtataaatctgtttaggcaccctcatccattgagctagcttttgggatgagattcaagcccat |
36496237 |
T |
|
| Q |
397 |
tt |
398 |
Q |
| |
|
|| |
|
|
| T |
36496236 |
tt |
36496235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 391
Target Start/End: Original strand, 22379 - 22471
Alignment:
| Q |
299 |
agtcccacattgctcaggttctcaggatgttgggtgtatcaatctgcctggacaccctcatcctttgaactagcttttgagatgagatccaag |
391 |
Q |
| |
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|||||||||| ||| |||||| | ||||||| |||||| ||| ||| || ||| |||||||||||| ||||||||| ||||||| ||||| |
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|
| T |
22379 |
agtcccacatcgcttaggttcccgggatgttcagtgtataaatatgcttgagtaccttcatcctttgaattagcttttgggatgagaaccaag |
22471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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