View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_low_26 (Length: 400)
Name: NF1711_low_26
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 14457545 - 14457792
Alignment:
| Q |
1 |
attgataataataactaatnnnnnnntgtttagggctaaaccctaaaccctaacaaatatcaaattatcaataaatgattctattgttcaaaatcatttt |
100 |
Q |
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| T |
14457545 |
attgataataataactaataaaaaaatgtttagggctaaaccctaaaccctaacaaatatctaattatcaataaatgattctattgttcaaaatcaattt |
14457644 |
T |
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| Q |
101 |
tgaggatttaatggatctgaatcctatagaggtcacaccttgcagggtcagtatggatggatttgaattggatatgagtttagaatttatctctcttata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14457645 |
tgaggatttaatggatctgaatcctatagaggtcacaccttgcagggtcagtatggatggatttgaattggatatgagtttagaatttatctctcttata |
14457744 |
T |
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| Q |
201 |
tcttacagctgagtagtagaattttacagtgcagttaaactacaacat |
248 |
Q |
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| T |
14457745 |
tcttacagctgagtagtagaattttacagtgcagttaaactacaacat |
14457792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 289 - 380
Target Start/End: Original strand, 14457799 - 14457890
Alignment:
| Q |
289 |
ataataaaaagaaaatcaaactacaacattggcttttcatcagtttgttgtgtgcatggtgaatcttacattcacctcctcttcttgctcgt |
380 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
14457799 |
ataataaaaagaaaatcaaactacaacattggctttccatcagcttgttgtgtgcatggtgaatcttacattcgcctcctcttcttgctcgt |
14457890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 253 - 377
Target Start/End: Original strand, 14466638 - 14466760
Alignment:
| Q |
253 |
ataaatatacaatcctaaaaaacatttgtaatcatgataataaaaagaaaatcaaactacaacattggcttttcatcagtttgttgtgtgcatggtgaat |
352 |
Q |
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||||||| |||||||| |||||||| |||||||||||| ||||||||||||||||||| |||||||||| ||||||||| |||||||||||| ||||||| |
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| T |
14466638 |
ataaatacacaatccttaaaaacatctgtaatcatgatgataaaaagaaaatcaaactgcaacattggc-tttcatcagcttgttgtgtgcacggtgaat |
14466736 |
T |
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| Q |
353 |
cttacattcacctcctcttcttgct |
377 |
Q |
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|||||| || ||||||||| ||||| |
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| T |
14466737 |
cttaca-tcgcctcctcttgttgct |
14466760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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