View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_low_27 (Length: 395)
Name: NF1711_low_27
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1711_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 383
Target Start/End: Original strand, 9788674 - 9789039
Alignment:
Q |
18 |
aacccatctttgagccaaggtgcacctaggacatgtatgttagcgccaaagcctagaaagctagaaagatcagtttgaaagattcatccctgtttcccaa |
117 |
Q |
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T |
9788674 |
aacccatctttgagccaaggtgcacctaggacatgtatgttagcgccaaagcctagaaagctagaaagatcagtttgaaagattcatccctgtttcccaa |
9788773 |
T |
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Q |
118 |
gaatagccacattaaagaaagtaaggtatttaaatcccattccttcataatttttatgaacatacagtttttcccatgttgtttcatatattctctataa |
217 |
Q |
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T |
9788774 |
gaatagccacattaaagaaagtaaggtctttaaatcccattccttcataatttttatgaacatacagtttttcccatgttgtttcatatattctctataa |
9788873 |
T |
|
Q |
218 |
cataaattgatttggtgggaagccagaacacgctcatgatatatgatgggatagattggagaacttatttgatcattacctttcttccagcttttgatag |
317 |
Q |
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T |
9788874 |
cataaattgatttggtgggaagccagaacacgctcatgatatatgatgggatagattggagaacttatttgatcattacctttcttccagcttttgatag |
9788973 |
T |
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Q |
318 |
acagttgctactctaagggttaattttatgccaaattcgatccttgataaaaccgaaagttgcttc |
383 |
Q |
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T |
9788974 |
acagtttctactctaagtgttaattttatgccaaattcgatccttgataaaaccgaaagttgcttc |
9789039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 368
Target Start/End: Original strand, 16769140 - 16769250
Alignment:
Q |
258 |
atatgatgggatagattggagaacttatttgatcattacctttcttccagcttttgatagacagttgctactctaagggttaattttatgccaaattcga |
357 |
Q |
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T |
16769140 |
atatgatgagattgattgaatgacctatttgatcattacctcacgtttagctttggatagacatttgctactctaagagttgactttctgccatattcta |
16769239 |
T |
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Q |
358 |
tccttgataaa |
368 |
Q |
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||||||||||| |
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T |
16769240 |
tccttgataaa |
16769250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 249 - 377
Target Start/End: Complemental strand, 30303337 - 30303209
Alignment:
Q |
249 |
gctcatgatatatgatgggatagattggagaacttatttgatcattacctttcttccagcttttgatagacagttgctactctaagggttaattttatgc |
348 |
Q |
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|||||| ||||| |||||||| ||||| || || ||||||||||||||| || |||||||| || | ||| || |||||| || ||||||||| ||| |
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T |
30303337 |
gctcataatataagatgggattgattgtagtaccgatttgatcattacctctcgaccagctttggacaaacacttactactccaactgttaattttgtgc |
30303238 |
T |
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Q |
349 |
caaattcgatccttgataaaaccgaaagt |
377 |
Q |
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||||| || |||||||||||||| ||||| |
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T |
30303237 |
caaatacggtccttgataaaaccaaaagt |
30303209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 249 - 377
Target Start/End: Original strand, 28591595 - 28591723
Alignment:
Q |
249 |
gctcatgatatatgatgggatagattggagaacttatttgatcattacctttcttccagcttttgatagacagttgctactctaagggttaattttatgc |
348 |
Q |
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T |
28591595 |
gctcataatataagatgggattgattgtagtaccgatttgatcattacctctcgaccagctttggacaaacacttactactccaactgttaattttgtgc |
28591694 |
T |
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Q |
349 |
caaattcgatccttgataaaaccgaaagt |
377 |
Q |
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||||| || |||||||||||||| ||||| |
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T |
28591695 |
caaatacggtccttgataaaaccaaaagt |
28591723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 250 - 382
Target Start/End: Original strand, 34072969 - 34073101
Alignment:
Q |
250 |
ctcatgatatatgatgggatagattggagaacttatttgatcattacctttcttccagcttttgatagacagttgctactctaagggttaattttatgcc |
349 |
Q |
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||||||| ||||||||| |||| ||| ||||| ||||||||||| |||| ||| || ||||| || | ||| || |||||| || | ||||||| |||| |
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T |
34072969 |
ctcatgacatatgatggaatagcttgaagaacatatttgatcatgacctctctacctgctttggacaaacatttactactccaactgctaattttttgcc |
34073068 |
T |
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Q |
350 |
aaattcgatccttgataaaaccgaaagttgctt |
382 |
Q |
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T |
34073069 |
acactctgtccttgataaaactgaaagttgctt |
34073101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 307 - 383
Target Start/End: Original strand, 26392007 - 26392083
Alignment:
Q |
307 |
gcttttgatagacagttgctactctaagggttaattttatgccaaattcgatccttgataaaaccgaaagttgcttc |
383 |
Q |
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T |
26392007 |
gctttagatagacatttgctactccaagaattaattttgtgccaaatgcgatccttgataaatccaaaagtagcttc |
26392083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 377
Target Start/End: Original strand, 26953082 - 26953210
Alignment:
Q |
249 |
gctcatgatatatgatgggatagattggagaacttatttgatcattacctttcttccagcttttgatagacagttgctactctaagggttaattttatgc |
348 |
Q |
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|||||| ||||| |||||||| ||||| || || ||||||||||||||| || |||||||| || | ||| || ||||| || ||||||||| ||| |
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T |
26953082 |
gctcataatataagatgggattgattgtagtaccgatttgatcattacctctcgaccagctttggacaaacacttattactccaactgttaattttgtgc |
26953181 |
T |
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Q |
349 |
caaattcgatccttgataaaaccgaaagt |
377 |
Q |
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||||| | |||||||||||||| ||||| |
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T |
26953182 |
caaatatggtccttgataaaaccaaaagt |
26953210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 298
Target Start/End: Original strand, 21277988 - 21278037
Alignment:
Q |
249 |
gctcatgatatatgatgggatagattggagaacttatttgatcattacct |
298 |
Q |
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|||||| ||||| ||||||||||||||||| || ||||||||||||||| |
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T |
21277988 |
gctcataatataagatgggatagattggagtaccgatttgatcattacct |
21278037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 377
Target Start/End: Original strand, 23060984 - 23061112
Alignment:
Q |
249 |
gctcatgatatatgatgggatagattggagaacttatttgatcattacctttcttccagcttttgatagacagttgctactctaagggttaattttatgc |
348 |
Q |
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|||||| ||||| |||||||| ||||| | || ||||||||||||||| || ||| |||| || | ||| || |||||| || ||||||||| ||| |
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T |
23060984 |
gctcataatataagatgggattgattgtaataccgatttgatcattacctctcgaccaactttggacaaacacttactactccaactgttaattttgtgc |
23061083 |
T |
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Q |
349 |
caaattcgatccttgataaaaccgaaagt |
377 |
Q |
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||||| || |||||||||||||| ||||| |
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T |
23061084 |
caaatacggtccttgataaaaccaaaagt |
23061112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 179
Target Start/End: Complemental strand, 21117071 - 21116983
Alignment:
Q |
91 |
tttgaaagattcatccctgtttcccaagaatagccacattaaagaaagtaaggtatttaaatcccattccttcataatttttatgaaca |
179 |
Q |
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||||||| ||||||||||||| ||||| || || |||||||| | || || | |||||| |||||||| ||||||||||||||||| |
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T |
21117071 |
tttgaaattttcatccctgtttaccaagcattgctacattaaaagatgtgagatctttaaaccccattccaccataatttttatgaaca |
21116983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 369
Target Start/End: Original strand, 25905986 - 25906106
Alignment:
Q |
249 |
gctcatgatatatgatgggatagattggagaacttatttgatcattacctttcttccagcttttgatagacagttgctactctaagggttaattttatgc |
348 |
Q |
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|||||| ||||| |||| ||| ||||| || || ||||||||||||||| || |||||||| || | ||| || |||||| || ||||||||| | | |
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T |
25905986 |
gctcataatataagatgagattgattgtagtaccgatttgatcattacctctcgaccagctttggacaaacacttactactccaattgttaattttgtac |
25906085 |
T |
|
Q |
349 |
caaattcgatccttgataaaa |
369 |
Q |
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||||| || |||||||||||| |
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|
T |
25906086 |
caaatacggtccttgataaaa |
25906106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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