View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_low_29 (Length: 386)
Name: NF1711_low_29
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 5 - 367
Target Start/End: Original strand, 42997680 - 42998036
Alignment:
| Q |
5 |
agatggtcatgaattttatgataatgacttaattgctaatagccatattttgtagttaaaaggcattcaacataacatggctttcacgagtgtagataac |
104 |
Q |
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| T |
42997680 |
agatggtcatgaattttatgataatgagttaattgctaatagccatattttgtagttgaaaggcatacaacataatatagctttcacgagtgtagataag |
42997779 |
T |
|
| Q |
105 |
ttaaaaagaaagaaataaacacaa-tttcaataaaaggagaaagatattcaatctttaggcgaaaatgttaaacttcatctttttggtggtttaaatgac |
203 |
Q |
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| T |
42997780 |
ttaaaaagaaagaaataaacacatgtttcaataaaaggagaaagatattcaatctttaagcgaaaatattaaacttcatctttttagtggtttaaatgac |
42997879 |
T |
|
| Q |
204 |
atacgctatgtttgattttgactacaattattggaggtttaatcctctttcttgcctaatggttgttacttagnnnnnnnnnnnnnnattttgcttcatt |
303 |
Q |
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| T |
42997880 |
atacgctatgtttgattttgactataattattggaggtttaatcctctttcttgcctaatggctgttacttagtttttttc-------ttttgcttcatt |
42997972 |
T |
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| Q |
304 |
ttcttcattcttgtattggataacttcataactttatgtcttcttaaacacatcttgtgttgga |
367 |
Q |
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| T |
42997973 |
ttcttcattcttgtattggataacttcataactttatgtcttcttaaacacatcttgtgttgga |
42998036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 153 - 275
Target Start/End: Original strand, 4154778 - 4154902
Alignment:
| Q |
153 |
caatctttaggcgaaaatgttaaacttcatctttt-tggtggtttaaat-gacatacgctatgtttgattttgactacaattattggaggtttaatcctc |
250 |
Q |
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| T |
4154778 |
caatctttaggcataaatgttaagcttcatgttttctggtggtttaaatcgacatatgctatgtttgattttgactacaattattggaggtttaatcctc |
4154877 |
T |
|
| Q |
251 |
tttcttgcctaatggttgttactta |
275 |
Q |
| |
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|||||| | ||||||||||||||| |
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| T |
4154878 |
cttcttgaccaatggttgttactta |
4154902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 276
Target Start/End: Original strand, 24430244 - 24430309
Alignment:
| Q |
211 |
atgtttgattttgactacaattattggaggtttaatcctctttcttgcctaatggttgttacttag |
276 |
Q |
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| T |
24430244 |
atgtttgattttgactataattattgaaggcttaatcatctttcttatctaatggttgttccttag |
24430309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 39698377 - 39698417
Alignment:
| Q |
217 |
gattttgactacaattattggaggtttaatcctctttcttg |
257 |
Q |
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| T |
39698377 |
gattttgactacaattattggaggcttaatactctttcttg |
39698417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 4075859 - 4075923
Alignment:
| Q |
184 |
tttttggtggtttaaat-gacatacgctatgtttgattttgactacaattattggaggtttaatc |
247 |
Q |
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| T |
4075859 |
ttttttgtggttaaaatcgacatatactgtgtttgattttgactacacttattggaggcttaatc |
4075923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 269
Target Start/End: Complemental strand, 17265364 - 17265278
Alignment:
| Q |
183 |
ctttttggtggtttaaat-gacatacgctatgtttgattttgactacaattattggaggtttaatcctctttcttgcctaatggttgt |
269 |
Q |
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|||| |||||||| |||| |||||| |||||||| ||||||||||||| |||||||||| ||||||||||| |||||| | |||||| |
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| T |
17265364 |
ctttctggtggttaaaatcgacatatgctatgtt-gattttgactacacttattggaggcttaatcctcttcgttgccttaaggttgt |
17265278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 21138272 - 21138339
Alignment:
| Q |
208 |
gctatgtttgattttgactacaattattggaggtttaatcctctttcttgcctaatggttgttactta |
275 |
Q |
| |
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| T |
21138272 |
gctattttttattttgattacaatttttgggggcttaatcctctttcttgtctaattgttgtaactta |
21138339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 275
Target Start/End: Complemental strand, 34551390 - 34551242
Alignment:
| Q |
128 |
atttcaataaaaggagaaagatattcaatctttaggcgaaaatgttaaacttcatcttttt-ggtggtttaaat-gacatacgct-atgtttgattttga |
224 |
Q |
| |
|
||||||| | |||||| |||||||| | |||||| ||||||| |||||||||||| | | |||||||||| | ||||| | || |||||||||||||| |
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| T |
34551390 |
atttcaacataaggaggaagatattaattctttaagcgaaaaggttaaacttcatgtatacaggtggtttaatttgacat-ctctcatgtttgattttga |
34551292 |
T |
|
| Q |
225 |
ctacaattattggaggtttaatcctctttcttgcctaatggttgttactta |
275 |
Q |
| |
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||||||||| || ||| ||||| || ||||||| |||| |||||| ||||| |
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| T |
34551291 |
ctacaattactgtaggcttaat-ctttttcttgtctaagggttgtaactta |
34551242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 275
Target Start/End: Complemental strand, 2856738 - 2856569
Alignment:
| Q |
109 |
aaagaaagaaataaacaca-atttcaataaaaggagaaagatattcaatctttaggcgaaaatgttaaacttcat-ctttttggtggtttaaat-gacat |
205 |
Q |
| |
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||||| ||||||||||||| |||||| | ||||||||| ||||| |||||| ||||||| ||||| ||||| | || | |||||||||| ||||| |
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| T |
2856738 |
aaagagagaaataaacacatatttcagcataaggagaaaaatattatttctttaagcgaaaacgttaagtttcatgcattctaatggtttaaatcgacat |
2856639 |
T |
|
| Q |
206 |
acgctatgtttgattttgactacaattattggaggtttaatcctctttcttgcctaatggttgttactta |
275 |
Q |
| |
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| T |
2856638 |
atatgatgttcgattttgactacacttattggaaacttaatcctctttcttgcttaaccgttgtaactta |
2856569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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