View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_low_3 (Length: 690)
Name: NF1711_low_3
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 573; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 18 - 662
Target Start/End: Original strand, 55336817 - 55337457
Alignment:
| Q |
18 |
gttaatgttgtttagaagtaggttgttccaattttgacgctgttcgcagatgtttttgtgcatttcaattctgtcagatacagaatctaagatagcatag |
117 |
Q |
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| T |
55336817 |
gttaatgttgtttagaagtaggttgttccaattttgacgctgttcgccgatgtttttgtgcatttcaattctgtcagatacagaatctaagatagcatag |
55336916 |
T |
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| Q |
118 |
agttgcacggtgttggagttattgattgtagaattggataaatcatggtgtaaattatgtgtcctattgatgacannnnnnncaagcaataatgaaggaa |
217 |
Q |
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| T |
55336917 |
agttgcacggtgttggagttattgattgaagaattggataaatcatggtgtaaattatgtgtcctattgatgacatttttttcaagcaataatgaaggaa |
55337016 |
T |
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| Q |
218 |
ctgagtctttgaaggttaacccttcaaccagctttgcagtgggtatcctattcttaggaagtaaagaattgggtcttgggaaatggattgaggcattcac |
317 |
Q |
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| T |
55337017 |
ctgagtctttgaaggttaacccttcaaccagctttgcagtgggtatcctattcttaggaagtaaagaattgggtcttgggaaatggattgaggcattcac |
55337116 |
T |
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| Q |
318 |
atttcctctttttgaagacaagaaagaaaaagaagaagttgaggtgtgcatggaagccatgaaaatgaaatgattgtacgtatgttaattatgttttgct |
417 |
Q |
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| T |
55337117 |
attacctctttttgaagacaagaaagaaaaagaagaagttgaggtgtgcatggaagccatgaaaatgaaatgattgtacgtatgttaattatgttttgat |
55337216 |
T |
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| Q |
418 |
ttgtgtttagtgttagtgaggaaaggtttatatatatactatactattgtgacagggaggatgagtgcaacttgtaatgttatagttttattcaattttt |
517 |
Q |
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| T |
55337217 |
ttgtgtttagtgttagtgaggaaaggtttatata-----tatactattgtgacagggaggatgagtgcaacttgtaatgttatagttttattcaattttt |
55337311 |
T |
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| Q |
518 |
taagac-aagagttatgggaggtattaaacaaataggttcttagatacctatggaccaaatgtaggaatatttgtatacacacaataaaataacatgttt |
616 |
Q |
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|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55337312 |
tagtacaaagagttatgggaggtattaaacaaataggttcttagatacctatggaccaaatgtaggaatatttgtatacacacaataaaataacatgttt |
55337411 |
T |
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| Q |
617 |
ttagtattaaaaaatgaagctaatgagttcatgtcatgtgaaatta |
662 |
Q |
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| T |
55337412 |
ttagtattaaaaaatgaagctaatgagttcatgtcatgtgaaatta |
55337457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 55331383 - 55331485
Alignment:
| Q |
22 |
atgttgtttagaagtaggttgttccaattttgacgctgttcgcagatgtttttgtgcatttcaattctgtcagatacagaatctaagatagcatagagtt |
121 |
Q |
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| T |
55331383 |
atgttgtttagaagtaggttgttccaattctgtcgctgttggctgaggttgttgtgcatttcgattctgtcggatacagaatctaaaattgcatagagtt |
55331482 |
T |
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| Q |
122 |
gca |
124 |
Q |
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||| |
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| T |
55331483 |
gca |
55331485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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