View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_low_30 (Length: 383)
Name: NF1711_low_30
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 17 - 377
Target Start/End: Original strand, 36348181 - 36348541
Alignment:
| Q |
17 |
atatctaagtgattctcaactccaatattcatagacaaatttccatgatttctttctaattcattattatttcctaatggagttagaaaattactgttct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36348181 |
atatctaagtgattctcaactccaatattcatagacaaatttccatgatttctttctaattcattattatttcctaatggagttagaaaattactgttct |
36348280 |
T |
|
| Q |
117 |
ttttcacttcctcaacacaccattttagtacttcattgtttctaaggttttgaacagaacctgctaattctgttgcttgttgttcttttctttccatgaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36348281 |
ttttcacttcctcaacacaccattttagtacttcattgtttctaaggttttgaacagaacctgctaattctgttgcttgttgttcttttctttccatgaa |
36348380 |
T |
|
| Q |
217 |
catatggttgttattattgttgttgaagggtcttaatccaaaccctccattttgaatgatttcttgttccttttgtgatcggtcagacgatgttaagcaa |
316 |
Q |
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|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36348381 |
cacatggttgttattattgttgttgaagtgtcttaatccaaaccctccattttgaatgatctcttgttccttttgtgatcggtcagacgatgttaagcaa |
36348480 |
T |
|
| Q |
317 |
ctactgtccatcgagccgtcgtttggttgaggacaaaatccttgtaactctttcatctctg |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36348481 |
ctactgtccatcgagccgtcgtttggttgaggacaaaatccttgtaactctttcatctctg |
36348541 |
T |
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