View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_low_32 (Length: 374)
Name: NF1711_low_32
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 13 - 356
Target Start/End: Original strand, 8289937 - 8290275
Alignment:
| Q |
13 |
taatactatcatgatttatgtgatttgggtcataagtttactaaccaagaaaaatactactcctaatgcagttacttatgcaacaagtaaaaacgaggnn |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8289937 |
taatactatcatgatttatgtgatttgggtcataagtttactaaccaagaaaaatactactcctaatgcagttacttatgcaacaagtaaaaacgaggaa |
8290036 |
T |
|
| Q |
113 |
nnnnnnttaattgcaaacacaaactaactaaaaacttctatttacactaagcaaacttggtttaaattagtaatctcaaccggtttttggtgtgtcatat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8290037 |
aaaaaattaattgcaaacacaaactaactaaaaacttctatttacactaaacaaacttggtttgaattagtaatctcaaccggtttttggtgtgtcatat |
8290136 |
T |
|
| Q |
213 |
gcatagtt-nnnnnnnnnnnctaatgtgaaacactcttgcagcataagctaataacaacctatgaacttgttgagacttgagactttttaacatgtccac |
311 |
Q |
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|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8290137 |
gcatagttaaaaaaaaaaaactaatgtgaaacactcttgcagcat------ataacaacctatgaacttgttgagacttgagactttttaacatgtccac |
8290230 |
T |
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| Q |
312 |
cttattctatcaaattttgtccatttcatgcactgcatcagaatc |
356 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8290231 |
cttattctatcaaattttgtccatttcatgcaatgcatcagaatc |
8290275 |
T |
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