View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1711_low_33 (Length: 373)

Name: NF1711_low_33
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1711_low_33
NF1711_low_33
[»] chr8 (4 HSPs)
chr8 (26-355)||(42202487-42202816)
chr8 (42-334)||(44684290-44684582)
chr8 (212-334)||(25967989-25968111)
chr8 (99-136)||(3578048-3578085)
[»] chr5 (5 HSPs)
chr5 (55-355)||(3678241-3678540)
chr5 (49-355)||(2756301-2756606)
chr5 (47-355)||(42628996-42629303)
chr5 (42-139)||(3761007-3761104)
chr5 (301-355)||(3761247-3761301)
[»] chr2 (3 HSPs)
chr2 (78-355)||(38970846-38971123)
chr2 (58-139)||(16080465-16080546)
chr2 (212-351)||(9017570-9017709)
[»] chr4 (4 HSPs)
chr4 (55-355)||(55328948-55329248)
chr4 (47-337)||(18847870-18848160)
chr4 (42-334)||(42111001-42111293)
chr4 (48-322)||(55353392-55353666)
[»] chr7 (5 HSPs)
chr7 (47-355)||(6232005-6232314)
chr7 (47-343)||(48887990-48888286)
chr7 (48-168)||(19883466-19883586)
chr7 (47-175)||(44346457-44346585)
chr7 (301-355)||(19883600-19883654)
[»] chr6 (1 HSPs)
chr6 (47-355)||(380662-380971)
[»] scaffold0691 (1 HSPs)
scaffold0691 (42-334)||(997-1289)
[»] chr3 (1 HSPs)
chr3 (47-287)||(51361138-51361378)
[»] chr1 (1 HSPs)
chr1 (42-355)||(13154805-13155117)


Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 26 - 355
Target Start/End: Complemental strand, 42202816 - 42202487
Alignment:
Q  26 acctgcgagctctagaaccataagtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagagg 125  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42202816 acctgcgagctctagaaccataagtcccagacacctctaaaactgccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagagg 42202717  T
Q  126 caaggaggactcttaagtctagcattcgcccaattccacgaaatcaccttaatttcctcaactatttcaccataatccctcattaaattattaaaaatcc 225  Q
    |||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  42202716 caaggaggactcttaagtctagaattcacccaattccacaaaatcaccttaatttcctcaactatttcaccataatccttcattaaattattgaaaatcc 42202617  T
Q  226 tatcattccgggccttccaaatcgaccataaaaccgcatgccatatcaaccaataacctttacgaagtttcctcctcccaatttccccattccaacattc 325  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42202616 tatcattccgggctttccaaatcgaccataaaaccgcatgccatatcaaccaataacctttacgaagtttcctcctcccaatttccccattccaacattc 42202517  T
Q  326 aaactgttgaaaaagagattgcggtgtaat 355  Q
    ||| ||||||||||||||||||||||||||    
T  42202516 aaaatgttgaaaaagagattgcggtgtaat 42202487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 42 - 334
Target Start/End: Complemental strand, 44684582 - 44684290
Alignment:
Q  42 accataagtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaa 141  Q
    |||| ||||||||||||||||||||||| ||||| || ||  |  ||||||||  | ||||||||||||||||| ||| ||||||| |||||||||||||    
T  44684582 accaaaagtcccagacacctctaaaactaccccacctgtcggagcaagcattccttggggttccaacaccactcataaaagaggcagggaggactcttaa 44684483  T
Q  142 gtctagcattcgcccaattccacgaaatcaccttaatttcctcaactatttcaccataatccctcattaaattattaaaaatcctatcattccgggcctt 241  Q
    || | | | ||||||||||||| || | ||||||||| || ||||| ||||| |||| |||  |||  | |  ||||||||||||||||||||  |  ||    
T  44684482 gttttgtaatcgcccaattccaagagagcaccttaatgtcatcaacaatttccccatgatctttcacaatagaattaaaaatcctatcattcctcgtttt 44684383  T
Q  242 ccaaatcgaccataaaaccgcatgccatatcaaccaataacctttacgaagtttcctcctcccaatttccccattccaacattcaaactgttg 334  Q
    ||| |||| ||| | ||| |||||||| |||| ||||||||||||||| || ||    |||||| | |||||| ||||||| ||||| |||||    
T  44684382 ccagatcgtccagagaactgcatgccaaatcatccaataacctttacggagctttagtctcccagtctccccactccaacactcaaaatgttg 44684290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 212 - 334
Target Start/End: Original strand, 25967989 - 25968111
Alignment:
Q  212 attattaaaaatcctatcattccgggccttccaaatcgaccataaaaccgcatgccatatcaaccaataacctttacgaagtttcctcctcccaatttcc 311  Q
    ||||||||||||||| ||||| || || | |||||||  |||||    |||||||||   |||||||||||||||||||||| || || ||||||| ||     
T  25967989 attattaaaaatcctgtcattacgcgcttcccaaatcacccataccgacgcatgccacgccaaccaataacctttacgaagtctcttcttcccaatctct 25968088  T
Q  312 ccattccaacattcaaactgttg 334  Q
    ||| ||||||||||||| |||||    
T  25968089 ccactccaacattcaaagtgttg 25968111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 136
Target Start/End: Original strand, 3578048 - 3578085
Alignment:
Q  99 gggttccaacaccactcgtaatagaggcaaggaggact 136  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  3578048 gggttccaacaccactcgtaaaagaggcaaagaggact 3578085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 165; Significance: 4e-88; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 55 - 355
Target Start/End: Original strand, 3678241 - 3678540
Alignment:
Q  55 gacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtctagcattcgc 154  Q
    ||||||||||||||| ||| | |||||| |||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||| | || |    
T  3678241 gacacctctaaaactgccc-acctatcttaataagcattcgatggggttccaacacaacttgtaatagaggcaaggaggactcttaagtctagtaatcac 3678339  T
Q  155 ccaattccacgaaatcaccttaatttcctcaactatttcaccataatccctcattaaattattaaaaatcctatcattccgggccttccaaatcgaccat 254  Q
    |||||||||||||||||||||||| |||||||| ||||||||| ||||| ||  |||||| || ||||||||||||||||| ||||||||||||| ||||    
T  3678340 ccaattccacgaaatcaccttaatctcctcaacaatttcaccaaaatccttcgataaatttttgaaaatcctatcattccgcgccttccaaatcgtccat 3678439  T
Q  255 aaaaccgcatgccatatcaaccaataacctttacgaagtttcctcctcccaatttccccattccaacattcaaactgttgaaaaagagattgcggtgtaa 354  Q
    |  ||||||||||| |||||||||| |||||| |||||||| |||||||| || |||||||||||||| ||||| |||||||| | |||||| |||||||    
T  3678440 accaccgcatgccaaatcaaccaatgacctttccgaagtttactcctcccgatctccccattccaacactcaaaatgttgaaacatagattgaggtgtaa 3678539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 49 - 355
Target Start/End: Original strand, 2756301 - 2756606
Alignment:
Q  49 gtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtctagc 148  Q
    ||||| ||| ||||||||||| ||||| |||||||| ||| ||||   | ||||||||||||||||||||||| ||||| ||||| ||||| |||||||     
T  2756301 gtcccggacgcctctaaaactaccccaactatctcagtaaacatttcttggggttccaacaccactcgtaataaaggcacggaggcctctttagtctaga 2756400  T
Q  149 attcgcccaattccacgaaatcaccttaatttcctcaactatttcaccataatccctcattaaattattaaaaatcctatcattccgggccttccaaatc 248  Q
    |  |  |||||||||||||| ||||||||| || ||||| ||||||||||||||  |||  | ||||||||||||||||||||| |  || |||||||||    
T  2756401 aaccatccaattccacgaaagcaccttaatctcatcaacaatttcaccataatctttcacaagattattaaaaatcctatcatttctcgctttccaaatc 2756500  T
Q  249 gaccataaaaccgcatgccatatcaaccaataacctttacgaagtttcctcctcccaatttccccattccaacattcaaactgttgaaaaagagattgcg 348  Q
    | |||||| |  | |||||| | || |||||  ||||||| ||||||  || ||||||| |||||| ||||||||||||| ||||| ||| ||||||| |    
T  2756501 gtccataagattgaatgccaaaccatccaatttcctttacaaagttttttcttcccaatctccccactccaacattcaaaatgttg-aaacgagattgag 2756599  T
Q  349 gtgtaat 355  Q
    |||||||    
T  2756600 gtgtaat 2756606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 47 - 355
Target Start/End: Original strand, 42628996 - 42629303
Alignment:
Q  47 aagtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtcta 146  Q
    ||||||| ||| ||||||||||| ||||| ||||||||  |  |||||  | ||||||| ||||||||| ||||||||||| |||||||| || ||||||    
T  42628996 aagtcccggacgcctctaaaactaccccaactatctcagaagacattccttggggttccgacaccactcataatagaggcagggaggacttttcagtcta 42629095  T
Q  147 gcattcgcccaattccacgaaatcaccttaatttcctcaactatttcaccataatccctcattaaattattaaaaatcctatcattccgggccttccaaa 246  Q
    | |  ||||||||||||||||| |||| ||||||| ||||| ||||||||| | ||  |||  | |||| |||||||||||||||| |   | |||||||    
T  42629096 gtaaccgcccaattccacgaaagcaccataatttcatcaacaatttcaccaaattctttcacaagattactaaaaatcctatcatttctcactttccaaa 42629195  T
Q  247 tcgaccataaaaccgcatgccatatcaaccaataacctttacgaagtttcctcctcccaatttccccattccaacattcaaactgttgaaaaagagattg 346  Q
    | | |||||| ||||||||||| |||| |||||| ||||||| ||| ||  || ||||  | |||||| ||||||||||||| |||||||| |||||| |    
T  42629196 t-gtccataataccgcatgccaaatcatccaatatcctttacaaagctttttcttcccggtctccccactccaacattcaaaatgttgaaacagagatcg 42629294  T
Q  347 cggtgtaat 355  Q
     ||||||||    
T  42629295 aggtgtaat 42629303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 42 - 139
Target Start/End: Original strand, 3761007 - 3761104
Alignment:
Q  42 accataagtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactctt 139  Q
    |||| |||||||| |||||||||||||| ||||| |||| ||| ||| |||||  | |||||| |||| ||||||||||||||||| |||| ||||||    
T  3761007 accaaaagtcccaaacacctctaaaactaccccagctatatcagtaaacattccttggggttcaaacagcactcgtaatagaggcagggagaactctt 3761104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 355
Target Start/End: Original strand, 3761247 - 3761301
Alignment:
Q  301 tcccaatttccccattccaacattcaaactgttgaaaaagagattgcggtgtaat 355  Q
    ||||||| |||||| ||||||||||||| |||||||| | |||||| ||||||||    
T  3761247 tcccaatctccccactccaacattcaaaatgttgaaacaaagattgaggtgtaat 3761301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 146; Significance: 8e-77; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 78 - 355
Target Start/End: Complemental strand, 38971123 - 38970846
Alignment:
Q  78 tatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtctagcattcgcccaattccacgaaatcaccttaa 177  Q
    |||||||||||||||||  | |||||||||||||||||||||||||||||| ||||||| |||||||||| ||| |||||||||||||||||||||||||    
T  38971123 tatctcaataagcattctttggggttccaacaccactcgtaatagaggcaatgaggacttttaagtctagaatttgcccaattccacgaaatcaccttaa 38971024  T
Q  178 tttcctcaactatttcaccataatccctcattaaattattaaaaatcctatcattccgggccttccaaatcgaccataaaaccgcatgccatatcaacca 277  Q
    ||||||| || ||||||||| ||||| |||||  ||| || ||||||||||||||||   | |||||||||  |||||| ||||| ||||| ||||||||    
T  38971023 tttcctccacaatttcaccaaaatccttcatttgatttttgaaaatcctatcattcctctctttccaaatcatccataacaccgcgtgccaaatcaacca 38970924  T
Q  278 ataacctttacgaagtttcctcctcccaatttccccattccaacattcaaactgttgaaaaagagattgcggtgtaat 355  Q
    ||||||||| |||||||| | ||||||||| |||||||||||||| ||||| || ||||| |||||||| ||||||||    
T  38970923 ataacctttccgaagtttacgcctcccaatctccccattccaacactcaaaatgatgaaatagagattgaggtgtaat 38970846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 139
Target Start/End: Complemental strand, 16080546 - 16080465
Alignment:
Q  58 acctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactctt 139  Q
    |||||||||||| |||||  | |||||  || |||||  | ||||||||||||||||| ||| |||||||||||||||||||    
T  16080546 acctctaaaactaccccaattttctcatcaaacattccttggggttccaacaccactcataaaagaggcaaggaggactctt 16080465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 351
Target Start/End: Original strand, 9017570 - 9017709
Alignment:
Q  212 attattaaaaatcctatcattccgggccttccaaatcgaccataaaaccgcatgccatatcaaccaataacctttacgaagtttcctcctcccaatttcc 311  Q
    |||||||||||| ||||||||||   | |||||||||  ||| | |   |||||||| | ||||||||| |||||||||||| |  || || |||| ||     
T  9017570 attattaaaaattctatcattccacactttccaaatcatccaaagagaggcatgccacaccaaccaataccctttacgaagtcttttcttctcaatatca 9017669  T
Q  312 ccattccaacattcaaactgttgaaaaagagattgcggtg 351  Q
    ||| ||||||||||||| |||||||| | |||||| ||||    
T  9017670 ccactccaacattcaaattgttgaaacaaagattggggtg 9017709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 55 - 355
Target Start/End: Complemental strand, 55329248 - 55328948
Alignment:
Q  55 gacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtctagcattcgc 154  Q
    ||||||||||||||| ||||| ||||||||||||||||||  |  ||||||||||||||||||||||||||||||||| |||||||||||| | |||||     
T  55329248 gacacctctaaaactgccccacctatctcaataagcattccttgaggttccaacaccactcgtaatagaggcaaggagaactcttaagtcttgaattcgt 55329149  T
Q  155 ccaattccacgaaatcaccttaatttcctcaactatttcaccataatccctcattaaattattaaaaatcctatcattccgggccttccaaatcgaccat 254  Q
     ||||| ||||||||||||||||||||||| || ||||||||| ||||| |||  |  ||||| ||||||||||||||||  || |||||||||| ||||    
T  55329148 tcaatttcacgaaatcaccttaatttcctccacaatttcaccaaaatccttcaaaaggttattgaaaatcctatcattcctcgctttccaaatcgtccat 55329049  T
Q  255 aaaaccgcatgccatatcaaccaataacctttacgaagtttcctcctcccaatttccccattccaacattcaaactgttgaaaaagagattgcggtgtaa 354  Q
    || ||||| ||||| ||||||||||| |||||  ||| ||| | |||||| || |||||||||||||| ||||| ||||||||||||||||| |||||||    
T  55329048 aacaccgcgtgccaaatcaaccaatatcctttttgaaatttacgcctccctatctccccattccaacactcaaaatgttgaaaaagagattgaggtgtaa 55328949  T
Q  355 t 355  Q
    |    
T  55328948 t 55328948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 47 - 337
Target Start/End: Complemental strand, 18848160 - 18847870
Alignment:
Q  47 aagtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtcta 146  Q
    ||||||| ||||||||||||||| ||||| ||||||||||| ||||||  | ||||||||||||||||||||||||||||| |||||||| |||||||||    
T  18848160 aagtcccggacacctctaaaactaccccaactatctcaataggcattccttggggttccaacaccactcgtaatagaggcagggaggacttttaagtcta 18848061  T
Q  147 gcattcgcccaattccacgaaatcaccttaatttcctcaactatttcaccataatccctcattaaattattaaaaatcctatcattccgggccttccaaa 246  Q
    | |  ||||||||||||| ||| ||||||||| || ||||| |||||| ||  |||  |||  | ||||||||||||||||||||| |  || |||||||    
T  18848060 gtaaccgcccaattccaccaaagcaccttaatgtcatcaacaatttcatcacgatctttcacaagattattaaaaatcctatcatttcttgctttccaaa 18847961  T
Q  247 tcgaccataaaaccgcatgccatatcaaccaataacctttacgaagtttcctcctcccaatttccccattccaacattcaaactgttgaaa 337  Q
    ||| |||||| ||||||||||| ||||||||||| ||||||| ||| ||  || ||||||| |||||| ||||||||||||| ||||||||    
T  18847960 tcgtccataataccgcatgccaaatcaaccaataccctttacaaagctttttcttcccaatctccccactccaacattcaaaatgttgaaa 18847870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 42 - 334
Target Start/End: Original strand, 42111001 - 42111293
Alignment:
Q  42 accataagtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaa 141  Q
    |||| ||||||| ||||||||||||||| ||||| || ||  |  ||||||||  | |||||||||||||||||  || |||||||  ||||||||||||    
T  42111001 accaaaagtcccggacacctctaaaactaccccacctgtcggagcaagcattccttggggttccaacaccactcaaaaaagaggcagtgaggactcttaa 42111100  T
Q  142 gtctagcattcgcccaattccacgaaatcaccttaatttcctcaactatttcaccataatccctcattaaattattaaaaatcctatcattccgggcctt 241  Q
    |||| | | ||||||||||||| || | ||||||||| || ||||| ||||| ||||||||  |||  | |  ||||||||||||||||||||  |  ||    
T  42111101 gtcttgtaatcgcccaattccaagagagcaccttaatgtcatcaacaatttccccataatctttcacaatagaattaaaaatcctatcattcctcgtttt 42111200  T
Q  242 ccaaatcgaccataaaaccgcatgccatatcaaccaataacctttacgaagtttcctcctcccaatttccccattccaacattcaaactgttg 334  Q
    |||||||| ||| | |||||||||||| |||| |||||||||||||||||| ||    |||||||| |||||| ||||||| ||||| |||||    
T  42111201 ccaaatcgtccaaagaaccgcatgccaaatcatccaataacctttacgaagctttagtctcccaatctccccactccaacactcaaaatgttg 42111293  T

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Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 48 - 322
Target Start/End: Complemental strand, 55353666 - 55353392
Alignment:
Q  48 agtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtctag 147  Q
    |||||| | ||||||| ||||| ||||| ||||| ||| | |||||   | |||||||| ||||| |||||| |||||||||||||||| |||||||| |    
T  55353666 agtccctgccacctctgaaactaccccacctatcgcaaaaggcatttcttggggttccagcaccaatcgtaaaagaggcaaggaggacttttaagtctgg 55353567  T
Q  148 cattcgcccaattccacgaaatcaccttaatttcctcaactatttcaccataatccctcattaaattattaaaaatcctatcattccgggccttccaaat 247  Q
     |||||||||||||||||| |||||||| || || ||||| || ||| ||  |||| | |  | |  ||| ||||||||||||||||  || ||||||||    
T  55353566 aattcgcccaattccacgagatcaccttgatgtcatcaacgatatcagcaacatccttgacaagagaattgaaaatcctatcattcctcgctttccaaat 55353467  T
Q  248 cgaccataaaaccgcatgccatatcaaccaataacctttacgaagtttcctcctcccaatttccccattccaaca 322  Q
    |||||| |  ||||||||||| | || |||||||||||| || |  || | |||||| || ||||||||||||||    
T  55353466 cgaccacatcaccgcatgccaaaccatccaataaccttttcgcaacttgcgcctcccgatctccccattccaaca 55353392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 130; Significance: 3e-67; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 47 - 355
Target Start/End: Complemental strand, 6232314 - 6232005
Alignment:
Q  47 aagtcccagacacctctaaaacttccccatct-atctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtct 145  Q
    ||||||| ||||||||||||||| |||||  | ||||||||||||||||  | |||||||| |||||||||||||||||||| ||||||||| |||||||    
T  6232314 aagtcccggacacctctaaaactgccccacattatctcaataagcattccttggggttccagcaccactcgtaatagaggcatggaggactcctaagtct 6232215  T
Q  146 agcattcgcccaattccacgaaatcaccttaatttcctcaactatttcaccataatccctcattaaattattaaaaatcctatcattccgggccttccaa 245  Q
    || ||| |||||||||||||||||||||||||| ||||| || | ||||||| ||||| |    | ||| ||||| ||| ||||||| |  || ||||||    
T  6232214 agaattagcccaattccacgaaatcaccttaatatcctccaccaattcaccaaaatccttggaaatattgttaaagatcatatcatttctcgctttccaa 6232115  T
Q  246 atcgaccataaaaccgcatgccatatcaaccaataacctttacgaagtttcctcctcccaatttccccattccaacattcaaactgttgaaaaagagatt 345  Q
    ||||||||||| || || ||||| ||||||||||||||||| ||||| || | ||||||||| |||||||||||||| ||||| ||||||||||| ||||    
T  6232114 atcgaccataacactgcgtgccaaatcaaccaataacctttccgaagcttacgcctcccaatctccccattccaacactcaaaatgttgaaaaagggatt 6232015  T
Q  346 gcggtgtaat 355  Q
    | ||||||||    
T  6232014 gaggtgtaat 6232005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 47 - 343
Target Start/End: Complemental strand, 48888286 - 48887990
Alignment:
Q  47 aagtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtcta 146  Q
    ||||||| |||||||||| |||| ||||| | ||||||| |  |||||  | ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  48888286 aagtcccggacacctctagaactaccccaccaatctcaaaagacattccttggggttccaacaccactcgtaatagaggcaaggaggactctttagtcta 48888187  T
Q  147 gcattcgcccaattccacgaaatcaccttaatttcctcaactatttcaccataatccctcattaaattattaaaaatcctatcattccgggccttccaaa 246  Q
    | |||| ||||||||||||| | ||||||||| || ||||| ||||||||  | ||  ||| ||     || ||||| ||||||||||| || |||||||    
T  48888186 gaattcacccaattccacgagagcaccttaatatcatcaaccatttcaccgaactctttcactagtgacttgaaaattctatcattccgagctttccaaa 48888087  T
Q  247 tcgaccataaaaccgcatgccatatcaaccaataacctttacgaagtttcctcctcccaatttccccattccaacattcaaactgttgaaaaagaga 343  Q
    ||| |||||| ||| ||||||| |||| |||||| ||||| ||||| || | ||||||||| |||||||||||||| ||||| || | |||||||||    
T  48888086 tcgtccataagaccacatgccaaatcatccaataccctttgcgaagctttcgcctcccaatctccccattccaacactcaaaatgattaaaaagaga 48887990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 48 - 168
Target Start/End: Original strand, 19883466 - 19883586
Alignment:
Q  48 agtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtctag 147  Q
    |||||| ||||||||||||||| ||||| |||||||||||| |||||  | ||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  19883466 agtcccggacacctctaaaactaccccaactatctcaataaacattccttggggttccaacaccactcgtaatagaggcacggaggactctttagtctag 19883565  T
Q  148 cattcgcccaattccacgaaa 168  Q
        |||||||||||||||||    
T  19883566 acaccgcccaattccacgaaa 19883586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 47 - 175
Target Start/End: Complemental strand, 44346585 - 44346457
Alignment:
Q  47 aagtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtcta 146  Q
    |||||||  |||||||| ||||||||||| ||| | ||| | ||||||  | |||||||| ||||||| |||| |||||||||||||||| |||||||||    
T  44346585 aagtccctaacacctctgaaacttccccacctaacgcaaaaggcattctttggggttccagcaccacttgtaaaagaggcaaggaggacttttaagtcta 44346486  T
Q  147 gcattcgcccaattccacgaaatcacctt 175  Q
    | |||||||||||| ||||||| ||||||    
T  44346485 gaattcgcccaattacacgaaagcacctt 44346457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 355
Target Start/End: Original strand, 19883600 - 19883654
Alignment:
Q  301 tcccaatttccccattccaacattcaaactgttgaaaaagagattgcggtgtaat 355  Q
    ||||||| |||||| ||||||||||||| |||||||| |||||||| ||||||||    
T  19883600 tcccaatctccccactccaacattcaaaatgttgaaacagagattgaggtgtaat 19883654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 47 - 355
Target Start/End: Original strand, 380662 - 380971
Alignment:
Q  47 aagtcccagacacctctaaaacttccccatct-atctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtct 145  Q
    ||||||| ||||||||||||||| |||||  | ||||||||||||||||  | |||||||| |||||||||||||||||||| ||||||||| |||||||    
T  380662 aagtcccggacacctctaaaactgccccacgttatctcaataagcattccttggggttccagcaccactcgtaatagaggcatggaggactcctaagtct 380761  T
Q  146 agcattcgcccaattccacgaaatcaccttaatttcctcaactatttcaccataatccctcattaaattattaaaaatcctatcattccgggccttccaa 245  Q
    || ||| |||||||||||||||||||||||||| ||||| || | ||||||| ||||| |    ||||| ||||| ||||||||||| |   | ||||||    
T  380762 agaattagcccaattccacgaaatcaccttaatatcctccaccaattcaccaaaatccttggaaaaattgttaaagatcctatcatttctcactttccaa 380861  T
Q  246 atcgaccataaaaccgcatgccatatcaaccaataacctttacgaagtttcctcctcccaatttccccattccaacattcaaactgttgaaaaagagatt 345  Q
    ||||||||||| || || ||||| ||||||||||||||||| ||| | || | ||||||||| |||||||||||||| ||||| ||||||||||| ||||    
T  380862 atcgaccataacactgcgtgccaaatcaaccaataacctttccgaggcttacgcctcccaatctccccattccaacactcaaaatgttgaaaaagggatt 380961  T
Q  346 gcggtgtaat 355  Q
    | ||||||||    
T  380962 gaggtgtaat 380971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 42 - 334
Target Start/End: Complemental strand, 1289 - 997
Alignment:
Q  42 accataagtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaa 141  Q
    |||| ||||||| ||||||||||||||| ||||| || ||  |  ||||||||  | || |||||||||||||| ||| ||||||| |||||||||||||    
T  1289 accaaaagtcccggacacctctaaaactaccccacctgtcggagcaagcattccttgggcttccaacaccactcataaaagaggcagggaggactcttaa 1190  T
Q  142 gtctagcattcgcccaattccacgaaatcaccttaatttcctcaactatttcaccataatccctcattaaattattaaaaatcctatcattccgggcctt 241  Q
    |||| | | ||||||||||||| |  | ||||||||| || ||||| ||||| ||||||||  |||  | |  ||||||||||||||||||||  |  ||    
T  1189 gtcttgtaatcgcccaattccaagggagcaccttaatgtcatcaacaatttccccataatctttcacaatagaattaaaaatcctatcattcctcgtttt 1090  T
Q  242 ccaaatcgaccataaaaccgcatgccatatcaaccaataacctttacgaagtttcctcctcccaatttccccattccaacattcaaactgttg 334  Q
    ||| |||| ||| | |||||||||||| |||| ||||||||||||||| || ||    |||||||| |||||| ||||||| ||||| |||||    
T  1089 ccagatcgtccaaagaaccgcatgccaaatcatccaataacctttacggagctttagtctcccaatctccccactccaacactcaaaatgttg 997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 47 - 287
Target Start/End: Complemental strand, 51361378 - 51361138
Alignment:
Q  47 aagtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtcta 146  Q
    ||||||| ||||||||||||||| ||||| ||||||||||| ||||||  | ||||||||||||||||| ||||||||||| |||| ||| || ||||||    
T  51361378 aagtccctgacacctctaaaactaccccaactatctcaataggcattccttggggttccaacaccactcataatagaggcagggagaacttttgagtcta 51361279  T
Q  147 gcattcgcccaattccacgaaatcaccttaatttcctcaactatttcaccataatccctcattaaattattaaaaatcctatcattccgggccttccaaa 246  Q
    | |  || |||||||||| ||| ||||||||| || | ||| |||||||| | |||  | |  |  ||||||||||||||||||||||  || ||| | |    
T  51361278 gtaaccgtccaattccacaaaagcaccttaatgtcataaacaatttcaccgtgatctttaacaatcttattaaaaatcctatcattccttgctttctata 51361179  T
Q  247 tcgaccataaaaccgcatgccatatcaaccaataaccttta 287  Q
    ||  |||||| |||||||||||  |||||||||| ||||||    
T  51361178 tcatccataataccgcatgccaagtcaaccaatacccttta 51361138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 42 - 355
Target Start/End: Complemental strand, 13155117 - 13154805
Alignment:
Q  42 accataagtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaa 141  Q
    |||| |||||||| ||||||||||| || ||| | || ||||| ||| |||||  |||||||| |||||||||||||||||||||||| ||||||||| |    
T  13155117 accaaaagtcccaaacacctctaaa-ctacccgagctttctcagtaaacattctttagggttcaaacaccactcgtaatagaggcaagtaggactcttta 13155019  T
Q  142 gtctagcattcgcccaattccacgaaatcaccttaatttcctcaactatttcaccataatccctcattaaattattaaaaatcctatcattccgggcctt 241  Q
     |||||    || | ||||||| || |  |||||||| || ||||| ||||| ||  | ||  |||  | ||| |||||||||||||| ||  | || ||    
T  13155018 atctagatagcgtctaattccaagagagtaccttaatgtcatcaacaatttctcccgattctttcacaagattgttaaaaatcctatcgtttggcgcttt 13154919  T
Q  242 ccaaatcgaccataaaaccgcatgccatatcaaccaataacctttacgaagtttcctcctcccaatttccccattccaacattcaaactgttgaaaaaga 341  Q
    |||||||| |||||  || |||||||| | || |||||| ||||| | |||  |  || ||||||| |||||  ||||||||||||| |||||||| | |    
T  13154918 ccaaatcgtccataggacagcatgccaaaccatccaatagcctttgcaaagccttttcttcccaatctccccgctccaacattcaaaatgttgaaacaaa 13154819  T
Q  342 gattgcggtgtaat 355  Q
    ||||| || |||||    
T  13154818 gattgaggagtaat 13154805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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