View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_low_34 (Length: 371)
Name: NF1711_low_34
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 19230561 - 19230833
Alignment:
| Q |
19 |
atgtatgtggtacataatttaccctaatcaacaaaacaactaaagtttgtgtctttggatgaaaacctcaaactagatcaaaatcatgagcagaaaaaga |
118 |
Q |
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| T |
19230561 |
atgtatgtggtacataatttaccctaatcaacaaaacaactaaagtttgtgtctttggatgaaaacctcaaactagatcaaaatcatgagcagaaaaaga |
19230660 |
T |
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| Q |
119 |
caaaattttcgagttatcaaatcaaatcctaaaacccctaacaccacatcaaaggggtttt--nnnnnnnnnnnnntttgatttgtttgattttagaata |
216 |
Q |
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| T |
19230661 |
caaaattttcgagttatcaaatcaaatcctaaaacccctaacaccacatcaaaggggttttaaaaaaaaaaaaaaaattgatttgtttgtttttagaata |
19230760 |
T |
|
| Q |
217 |
attaacaacaatcaagttcattaaggatataaatatgagatacataaaaatggcatgagaaaagataaaccct |
289 |
Q |
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| T |
19230761 |
attaacaacaaccaagttcattaaggatataaatatgagatacataaaaatggcatgagaaaagataaaccct |
19230833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 19239755 - 19239905
Alignment:
| Q |
19 |
atgtatgtggtacataatttaccctaatcaacaaaacaactaaagtttgtgtctttggatgaaaacctcaaactagatcaaaatcatgagcagaaaaaga |
118 |
Q |
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| T |
19239755 |
atgtatgtgctacataattaaccgtagtcaacaaaacaa---aagtttgtatctttggatgaaaacctcaaagtagatcaaaatcat-------aaaaga |
19239844 |
T |
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| Q |
119 |
caaaattttcgagttatcaaatcaaatcctaaaacccctaacaccacatcaaaggggtttt |
179 |
Q |
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| T |
19239845 |
caaaattttcgagttatcaaatcaaatcctaaaacccctaacaccacatcaaatgggtttt |
19239905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 194 - 245
Target Start/End: Original strand, 19239918 - 19239969
Alignment:
| Q |
194 |
ttgatttgtttgattttagaataattaacaacaatcaagttcattaaggata |
245 |
Q |
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|||||||||||| ||||||||||| ||||||||| ||| |||| |||||||| |
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| T |
19239918 |
ttgatttgtttgtttttagaataactaacaacaaccaaattcactaaggata |
19239969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 289
Target Start/End: Original strand, 19240016 - 19240054
Alignment:
| Q |
251 |
atgagatacataaaaatggcatgagaaaagataaaccct |
289 |
Q |
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| T |
19240016 |
atgagatacgtgaaaatggcatgagaaaagataaaccct |
19240054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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