View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1711_low_35 (Length: 367)
Name: NF1711_low_35
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_low_35 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 194 - 357
Target Start/End: Original strand, 41020250 - 41020413
Alignment:
| Q |
194 |
tggtatttgaccttctaaataataggcctctttagtcgttttagcaagttactaagcttaataatatttcttattcttatcataattccgacgacctaga |
293 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41020250 |
tggtatttgaccctctaaataataggtctctttagtcgttttagcaagttactaagcttaataatatttcttattcttatcataattccgacgacctagg |
41020349 |
T |
|
| Q |
294 |
ttatgttttgtataatcaaattgaaaagatgtacgaattgatggcataaaacatagctgttcat |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41020350 |
ttatgttttgtataatcaaattgaaaagatgtacgaattgatggcataaaacatagctgttcat |
41020413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 193 - 287
Target Start/End: Original strand, 22876979 - 22877073
Alignment:
| Q |
193 |
gtggtatttgaccttctaaataataggcctctttagtcgttttagcaagttactaagcttaataatatttcttattcttatcataattccgacga |
287 |
Q |
| |
|
||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22876979 |
gtggtatttagccctctaaataataggtctctttagtcgttttagcaagttactaagcttaataatatttcttattcttatcataattccgacga |
22877073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 41020075 - 41020171
Alignment:
| Q |
18 |
catcttttgttacataaatgatttttaaaagattaacttggggacccaaatatgttattttagtttgaaacttaaaaaattaatttgggaattctgtc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||| |||||| || | ||||||||| |
|
|
| T |
41020075 |
catcttttgttacataaatgatttttaaaagattaa-tttgggatccaaatatgttattttagtttgaaacttaaagaattaacttagaaattctgtc |
41020171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 22876805 - 22876901
Alignment:
| Q |
18 |
catcttttgttacataaatgatttttaaaagattaacttggggacccaaatatgttattttagtttgaaacttaaaaaattaatttgggaattctgtc |
115 |
Q |
| |
|
||||||||||||||| ||||||||||||| || ||||||||| |||||||||||| |||||||||||||||||||| ||||| ||| |||||||||| |
|
|
| T |
22876805 |
catcttttgttacattaatgatttttaaaggactaacttggg-acccaaatatgtcattttagtttgaaacttaaaggattaacttgagaattctgtc |
22876901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 11113712 - 11113763
Alignment:
| Q |
64 |
caaatatgttattttagtttgaaacttaaaaaattaatttgggaattctgtc |
115 |
Q |
| |
|
||||||||| ||||||||||||||||||||| | || |||||||||| |||| |
|
|
| T |
11113712 |
caaatatgtcattttagtttgaaacttaaaagactagtttgggaattttgtc |
11113763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 8464 times since January 2019
Visitors: 7803