View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1711_low_36 (Length: 366)
Name: NF1711_low_36
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_low_36 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 7295279 - 7295631
Alignment:
| Q |
1 |
aatctcagttgtgataacaatagacctgtgtatgtatggagtaattttgagttgtagttggggagtgttttggtggttaagaaagtgtagcttaatttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7295279 |
aatctcagttgtgataacaatagacctgtgtatgtatggagtaattttgagttgtagttggggagtgttttggtggttaagaaagtgtagcttaatttga |
7295378 |
T |
|
| Q |
101 |
agttgacgacaatgtggtcataatatatggctatctgcataattatgcaggtgggtggtggatactgataagtaggaattgatgccttgttaataccttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7295379 |
agttgacgacaatgtggtcataatatatggctatctgcataattatgcaggtgggtggtggatactgat-agtaggaattgatgccttgttaataccttt |
7295477 |
T |
|
| Q |
201 |
tgaatatcctccctccctttgactcaccaccctgcaaatctctactattttttcctccatttcattattatgatcaagcaaccagaaaagccgcctcaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7295478 |
tgaatatcctccctccctttgactcaccaccctgcaaatctctactattttttcctccatttcattattatgatcaagcaaccagaaaagccgcctcaaa |
7295577 |
T |
|
| Q |
301 |
gcaacta---aagaagtgtctctcccggctaatacgaaattcaaacatatatcc |
351 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7295578 |
gcaactaaagaagaagtgtctctcccggctaatatgaaattcaaacatatatcc |
7295631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 331
Target Start/End: Complemental strand, 13887755 - 13887633
Alignment:
| Q |
212 |
cctccctttgactcaccaccctgcaaatctctacta---ttttttcctccatttcattattatgatcaagcaaccagaaaagccgcctcaaagcaactaa |
308 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||| |||| ||||||| ||||| ||| |||| ||| |||||||||| || || ||||||||| | |
|
|
| T |
13887755 |
cctccctttgactcacaaccctgcaaatctcttctaatattttctcctccacttcatgattctgattaagtaaccagaaaaaccagcttaaagcaactga |
13887656 |
T |
|
| Q |
309 |
agaagtgtctctcccggctaata |
331 |
Q |
| |
|
||||||||||||||| ||||||| |
|
|
| T |
13887655 |
agaagtgtctctcccagctaata |
13887633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 351
Target Start/End: Original strand, 13897455 - 13897597
Alignment:
| Q |
212 |
cctccctttgactcaccaccctgcaaatctctacta---ttttttcctccatttcattattatgatcaagcaaccagaaaagccgcctcaaagcaactaa |
308 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| ||| |||| ||||| | ||||| ||| ||||||| ||||||||||| || || ||||||||| | |
|
|
| T |
13897455 |
cctccctttgacacacaaccctgcaaatctcttctaatattttctcctcaacttcatgattctgatcaaccaaccagaaaaaccagcttaaagcaactga |
13897554 |
T |
|
| Q |
309 |
agaagtgtctctcccggctaatacgaaattcaaacatatatcc |
351 |
Q |
| |
|
||||||||||||||| ||||||| |||||| | ||| |||||| |
|
|
| T |
13897555 |
agaagtgtctctcccagctaatatgaaatttacacaaatatcc |
13897597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 225 - 331
Target Start/End: Original strand, 1034525 - 1034634
Alignment:
| Q |
225 |
caccaccctgcaaatctctacta---ttttttcctccatttcattattatgatcaagcaaccagaaaagccgcctcaaagcaactaaagaagtgtctctc |
321 |
Q |
| |
|
||||||||||||||| ||| ||| |||| ||||| | ||||| ||| ||||||| ||||||||||| || |||||||||||| |||||||||||||| |
|
|
| T |
1034525 |
caccaccctgcaaatttcttctaatattttctcctcaacttcatgattctgatcaaccaaccagaaaaaccagctcaaagcaactgaagaagtgtctctc |
1034624 |
T |
|
| Q |
322 |
ccggctaata |
331 |
Q |
| |
|
|| ||||||| |
|
|
| T |
1034625 |
ccagctaata |
1034634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 220 - 351
Target Start/End: Original strand, 28666800 - 28666934
Alignment:
| Q |
220 |
tgactcaccaccctgcaaatctctactatt---ttttcctccatttcattattatgatcaagcaaccagaaaagccgcctcaaagcaactaaagaagtgt |
316 |
Q |
| |
|
|||||||||||| |||| |||||| ||| | || ||||||| ||||| ||| |||||||| ||||| |||| || |||||||| || ||||||||| |
|
|
| T |
28666800 |
tgactcaccaccttgcatatctcttctaatatcttctcctccacttcatgattctgatcaagtaaccaaaaaaaccaactcaaagccacagaagaagtgt |
28666899 |
T |
|
| Q |
317 |
ctctcccggctaatacgaaattcaaacatatatcc |
351 |
Q |
| |
|
||||||| |||| || ||||||| |||||||||| |
|
|
| T |
28666900 |
ctctcccagctagtataaaattcacacatatatcc |
28666934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 11905 times since January 2019
Visitors: 8179