View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1711_low_37 (Length: 360)

Name: NF1711_low_37
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1711_low_37
NF1711_low_37
[»] chr3 (4 HSPs)
chr3 (1-233)||(2637099-2637330)
chr3 (241-319)||(2658145-2658223)
chr3 (97-168)||(2658263-2658335)
chr3 (311-351)||(2637326-2637366)
[»] scaffold0097 (1 HSPs)
scaffold0097 (98-332)||(35864-36106)
[»] chr2 (1 HSPs)
chr2 (1-52)||(19500963-19501014)
[»] scaffold0201 (1 HSPs)
scaffold0201 (1-52)||(16342-16393)
[»] chr8 (2 HSPs)
chr8 (1-52)||(29346798-29346849)
chr8 (1-75)||(4461130-4461204)
[»] chr4 (1 HSPs)
chr4 (1-52)||(14443478-14443529)
[»] chr7 (3 HSPs)
chr7 (114-180)||(27982612-27982679)
chr7 (7-52)||(2731620-2731665)
chr7 (1-52)||(6468128-6468177)


Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 2637099 - 2637330
Alignment:
Q  1 gggtggggaatgcccctcttaaagtctggtctgtgttctctcttggtttgttctagtaatgaactagtggattgtcnnnnnnnnnnnnnnnntagctatg 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||    
T  2637099 gggtggggaatgcccttcttaaagtctggtctgtgttctctcttggtttgttctagtaatgaactagtggattgtcaaaaaaaaaaaaaaa-tagctatg 2637197  T
Q  101 tattgcccacattttcattacttgatcctccaagtgaaaagggtatttgatttgttttcagttattttgtatcatcagccgcaagtcatcccatcttatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2637198 tattgcccacattttcattacttgatcctccaagtgaaaagggtatttgatttgttttcagttattttgtatcatcagccgcaagtcatcccatcttatt 2637297  T
Q  201 ctgaaggacactgacactgatttgcttttgaga 233  Q
    |||||||||||||||||||||||| ||||||||    
T  2637298 ctgaaggacactgacactgatttgtttttgaga 2637330  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 241 - 319
Target Start/End: Complemental strand, 2658223 - 2658145
Alignment:
Q  241 agaaatcttgatttggagtggcagggataaattagtgatgaaatactctaaagggtgaaatgttgattcatgagacaca 319  Q
    |||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||    
T  2658223 agaagtcttgatttgaagtggtagggataaattagtgatgaaatactctaaagggtttaatgttgattcataagacaca 2658145  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 97 - 168
Target Start/End: Complemental strand, 2658335 - 2658263
Alignment:
Q  97 tatgtattgcccacattttcattacttgatcctccaagtgaaa-agggtatttgatttgttttcagttatttt 168  Q
    |||||||  ||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||    
T  2658335 tatgtatatcccacattttcattacttgatcctccaggtggaagagggtatttgatttgttttcagttatttt 2658263  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 311 - 351
Target Start/End: Original strand, 2637326 - 2637366
Alignment:
Q  311 tgagacacaaatctttatatagttgcattttaaagtattat 351  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2637326 tgagacacaaatctttatatagttgcattttaaagtattat 2637366  T

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Target: scaffold0097 (Bit Score: 141; Significance: 7e-74; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 98 - 332
Target Start/End: Original strand, 35864 - 36106
Alignment:
Q  98 atgtattgcccacattttcattacttgatcctccaagtgaaaa--gggtatttgatttgttttcagttattttgtatcatcagccgcaagtcatcccatc 195  Q
    |||||||||||||||||||||||||||| |||||| ||| |||  |||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||    
T  35864 atgtattgcccacattttcattacttgaacctccaggtggaaaaggggtatttgatttgctttcagttagtttgtatcatcagccacaagtcatcccatc 35963  T
Q  196 ttattctgaaggacactgacactga------tttgcttttgagatagtacaagaaatcttgatttggagtggcagggataaattagtgatgaaatactct 289  Q
    ||||| |||| ||||||||||||||      |||  ||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||     
T  35964 ttattttgaatgacactgacactgattttattttatttttgagatagtacaagaagtcttgatttggagtggtagggataagttagtgatgaaatactcc 36063  T
Q  290 aaagggtgaaatgttgattcatgagacacaaatctttatatag 332  Q
    |||||||| ||||||||||||||| |||| |||||||||||||    
T  36064 aaagggtggaatgttgattcatgacacacgaatctttatatag 36106  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 19501014 - 19500963
Alignment:
Q  1 gggtggggaatgcccctcttaaagtctggtctgtgttctctcttggtttgtt 52  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19501014 gggtggggaatgcccctcttaaagtctggtctttgttctctcttggtttgtt 19500963  T

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Target: scaffold0201 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 16393 - 16342
Alignment:
Q  1 gggtggggaatgcccctcttaaagtctggtctgtgttctctcttggtttgtt 52  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  16393 gggtggggaatgcccctcttaaagtctggtctttgttctctcttgatttgtt 16342  T

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Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 29346849 - 29346798
Alignment:
Q  1 gggtggggaatgcccctcttaaagtctggtctgtgttctctcttggtttgtt 52  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  29346849 gggtggggaatgcccctcttaaagtctggtctttgttctctcttgatttgtt 29346798  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 4461130 - 4461204
Alignment:
Q  1 gggtggggaatgcccctcttaaagtctggtctgtgttctctcttggtttgttctagtaatgaactagtggattgt 75  Q
    ||||||||||||||| |||||||||||||||| |||||||| |||||||||| |  |||||||  ||||||||||    
T  4461130 gggtggggaatgcccgtcttaaagtctggtctttgttctcttttggtttgtttttttaatgaaagagtggattgt 4461204  T

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Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 14443529 - 14443478
Alignment:
Q  1 gggtggggaatgcccctcttaaagtctggtctgtgttctctcttggtttgtt 52  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  14443529 gggtggggaatgcccctcttaaagtctggtctttgttctctcttgatttgtt 14443478  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 27982679 - 27982612
Alignment:
Q  114 ttcattacttgatcctccaagtg-aaaagggtatttgatttgttttcagttattttgtatcatcagcc 180  Q
    ||||||||||| ||||| | ||| |||| ||||||||||||||||||||||||||| |||||||||||    
T  27982679 ttcattacttgctcctctaggtggaaaatggtatttgatttgttttcagttattttatatcatcagcc 27982612  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 2731620 - 2731665
Alignment:
Q  7 ggaatgcccctcttaaagtctggtctgtgttctctcttggtttgtt 52  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||    
T  2731620 ggaatgctcctcttaaagtctggtctttgttctctcttggtttgtt 2731665  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 6468177 - 6468128
Alignment:
Q  1 gggtggggaatgcccctcttaaagtctggtctgtgttctctcttggtttgtt 52  Q
    |||||||||||||||| |||||||  |||| | |||||||||||||||||||    
T  6468177 gggtggggaatgccccccttaaag--tggtttttgttctctcttggtttgtt 6468128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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