View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1711_low_39 (Length: 353)

Name: NF1711_low_39
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1711_low_39
NF1711_low_39
[»] chr5 (11 HSPs)
chr5 (115-321)||(30748025-30748232)
chr5 (115-321)||(30340053-30340260)
chr5 (115-185)||(30481726-30481796)
chr5 (257-312)||(30058563-30058618)
chr5 (17-57)||(30747926-30747966)
chr5 (213-270)||(29851761-29851818)
chr5 (321-353)||(17419313-17419345)
chr5 (17-45)||(29870511-29870539)
chr5 (117-149)||(29870580-29870612)
chr5 (29-57)||(30481643-30481671)
chr5 (288-320)||(30481888-30481920)
[»] chr4 (1 HSPs)
chr4 (117-149)||(20298402-20298434)


Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 115 - 321
Target Start/End: Original strand, 30748025 - 30748232
Alignment:
Q  115 ctatgatgaagaaaatgacctgaattagaacatttgtaactttagttgagcagtgaaatatctttcatgtataaagattctggtgctcattctgggg-ga 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  30748025 ctatgatgaagaaaatgacctgaattagaacatttgtaactttagttgagcagtgaaatatctttcatgtataaagattctggtgctcattctgggggga 30748124  T
Q  214 tgggttccaaagaagtcaagattgagaatatataaaaatatttttgaataaaaataaagtgaattgaggcaaataaggggaaatagagatcttaccagta 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30748125 tgggttccaaagaagtcaagattgagaatatataaaaatatttttgaataaaaataaagtgaattgaggcaaataaggggaaatagagatcttaccagta 30748224  T
Q  314 aaattgaa 321  Q
    ||||||||    
T  30748225 aaattgaa 30748232  T

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Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 115 - 321
Target Start/End: Complemental strand, 30340260 - 30340053
Alignment:
Q  115 ctatgatgaagaaaatgacctgaattagaacatttgtaactttagttgagcagtgaaatatctttcatgtataaagattctggtgctcattctgggggat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30340260 ctatgatgaagaaaatgacctgaattagaacatttgtaactttagttgagcagtgaaatatctttcatgtataaagattctggtgctcattctgggggat 30340161  T
Q  215 gggttccaaagaagtcaagattgag-aatatataaaaatatttttgaataaaaataaagtgaattgaggcaaataaggggaaatagagatcttaccagta 313  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30340160 gggttccaaagaagtcaagattgagaaatatataaaaatacttttgaataaaaataaagtgaattgaggcagataaggggaaatagagatcttaccagta 30340061  T
Q  314 aaattgaa 321  Q
    ||||||||    
T  30340060 aaattgaa 30340053  T

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Target: chr5; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 30481726 - 30481796
Alignment:
Q  115 ctatgatgaagaaaatgacctgaattagaacatttgtaactttagttgagcagtgaaatatctttcatgta 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30481726 ctatgatgaagaaaatgacctgaattagaacatttgtaactttagttgagcagtgaaatatctttcatgta 30481796  T

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Target: chr5; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 257 - 312
Target Start/End: Original strand, 30058563 - 30058618
Alignment:
Q  257 ttgaataaaaataaagtgaattgaggcaaataaggggaaatagagatcttaccagt 312  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30058563 ttgaataaaaataaagtgaattgaggcagataaggggaaatagagatcttaccagt 30058618  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 30747926 - 30747966
Alignment:
Q  17 gtgtgttgaaggcaatcctaaccattcaattaaatccccac 57  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30747926 gtgtgttgaaggcaatcctaaccattcaattaaatccccac 30747966  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 29851761 - 29851818
Alignment:
Q  213 atgggttccaaagaagtcaagattgagaatatataaaaatatttttgaataaaaataa 270  Q
    ||||||| |||||||||||| | |||||||||||||||| ||||||||| ||||||||    
T  29851761 atgggttacaaagaagtcaacaatgagaatatataaaaagatttttgaaaaaaaataa 29851818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 353
Target Start/End: Complemental strand, 17419345 - 17419313
Alignment:
Q  321 aactttattgttggaatatgagctatcttgtcc 353  Q
    ||||||||| |||||||||||||||||||||||    
T  17419345 aactttatttttggaatatgagctatcttgtcc 17419313  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 29870511 - 29870539
Alignment:
Q  17 gtgtgttgaaggcaatcctaaccattcaa 45  Q
    |||||||||||||||||||||||||||||    
T  29870511 gtgtgttgaaggcaatcctaaccattcaa 29870539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 149
Target Start/End: Original strand, 29870580 - 29870612
Alignment:
Q  117 atgatgaagaaaatgacctgaattagaacattt 149  Q
    |||||||||||||| ||||||||||||||||||    
T  29870580 atgatgaagaaaattacctgaattagaacattt 29870612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 30481643 - 30481671
Alignment:
Q  29 caatcctaaccattcaattaaatccccac 57  Q
    |||||||||||||||||||||||||||||    
T  30481643 caatcctaaccattcaattaaatccccac 30481671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 320
Target Start/End: Original strand, 30481888 - 30481920
Alignment:
Q  288 aaggggaaatagagatcttaccagtaaaattga 320  Q
    |||||||||| ||||||||||||||||||||||    
T  30481888 aaggggaaattgagatcttaccagtaaaattga 30481920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 149
Target Start/End: Complemental strand, 20298434 - 20298402
Alignment:
Q  117 atgatgaagaaaatgacctgaattagaacattt 149  Q
    |||||||||||||| ||||||||||||||||||    
T  20298434 atgatgaagaaaattacctgaattagaacattt 20298402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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