View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_low_41 (Length: 349)
Name: NF1711_low_41
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_low_41 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 14 - 349
Target Start/End: Complemental strand, 36349118 - 36348783
Alignment:
| Q |
14 |
agactaataacaacaagtaagaaaaacaaaacccttttttaatcacactcttaatgtaatcttgttttatatgaaaactctaccactttaagattttatg |
113 |
Q |
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| T |
36349118 |
agactaataacaacaagtaagaaaaacaaaacccttttttaatcacactcttaatgtaatcttgttttatatgaaaactctaccactttaagattttatg |
36349019 |
T |
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| Q |
114 |
ctgactttcatatcccttttggtagagatttgcacataagtgaggcgctgcaaatgcagattgaggttcagagaagactcaatgaacaacttgaggtgag |
213 |
Q |
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| T |
36349018 |
ctgactttcatatcccttttggtagagatttgcacataagtgaggcgctgcaaatgcagattgaggttcagagaagactcaatgaacaacttgaggtgag |
36348919 |
T |
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| Q |
214 |
tctttgcagcttaaatatatatgcatgttaattttggatcatatcagatcctctgcagcgacagtagagctgttagatcttagtatcattgattttgaat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36348918 |
tctttgcagcttaaatatatatgcatgttaattttggatcatatcagatcctctgcagcgacagtagagctgttagatcttagtatcattgattttgaat |
36348819 |
T |
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| Q |
314 |
gtaagatctaactttactgcagccgttgcagagaat |
349 |
Q |
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| T |
36348818 |
gtaagatctaactttactgcagccgttgcagagaat |
36348783 |
T |
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