View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1711_low_42 (Length: 347)
Name: NF1711_low_42
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_low_42 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 17 - 336
Target Start/End: Original strand, 36219799 - 36220118
Alignment:
| Q |
17 |
acattatgtgaattttcaaaatgtagtttcataaaaagcaattgagtatatatatgtttggtatatcaataagacaagnnnnnnngagtcatgtttgctc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
36219799 |
acattatgtgaattttcaaaatgtagtttcataaaaagcaattgagtatatatatgtttggtatatcaataagacaagtttttttgagtcatgtttgctc |
36219898 |
T |
|
| Q |
117 |
catttactggattaggtatgatgaagctggagttgaaaaaggataagcaaatttgaatggacattagcagtataagatttgtgggttgagaaggtccagt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36219899 |
catttactggattaggtatgatgaagctggagttgaaaaaggataagcaaatttgaatggacattagcagtataagatttgtgggttgagaaggtccagt |
36219998 |
T |
|
| Q |
217 |
attcaacaagattctcaagatgtttccatcagcacatttgtggtagccaaataattgaaaattattattttctttcatcctatttttccaattgaaagat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36219999 |
attcaacaagattctcaagatgtttccatcagcacatttgtggtagccaaataattgaaaattattattttctttcatcctatttttccaattgaaagat |
36220098 |
T |
|
| Q |
317 |
atacttgtatgaaaacctat |
336 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
36220099 |
atacttgtatgaaaacctat |
36220118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 306
Target Start/End: Original strand, 36224918 - 36225089
Alignment:
| Q |
138 |
tgaagctggagttgaaaaaggataagcaaatttgaatggacattagcagtataaga---tttgtgggttgagaaggtccagtattcaacaagattctcaa |
234 |
Q |
| |
|
|||||||||| ||||||| |||| |||||||||||| |||||| ||||||||||| || |||||||| |||||| |||||||||||||||| |
|
|
| T |
36224918 |
tgaagctggaattgaaaagggatgagcaaatttgaagggacatatgcagtataagaatattcatgggttgatccggtccattattcaacaagattcttcg |
36225017 |
T |
|
| Q |
235 |
gatgtttccatcagcacatttgtggtagccaaataattgaaaattattattttctttcatcctatttttcca |
306 |
Q |
| |
|
||||||||||| |||| || | |||||||||||||||| || |||||||||| |||||||| |||||| |
|
|
| T |
36225018 |
gatgtttccattagcaagttcgatgtagccaaataattgagaagggttattttcttccatcctatatttcca |
36225089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 35948924 - 35948884
Alignment:
| Q |
259 |
gtagccaaataattgaaaattattattttctttcatcctat |
299 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||| |||| |
|
|
| T |
35948924 |
gtagccaaataattgaaaatgattattttcttccattctat |
35948884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 14576 times since January 2019
Visitors: 8422