View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1711_low_44 (Length: 339)
Name: NF1711_low_44
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1711_low_44 |
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[»] scaffold0148 (1 HSPs) |
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[»] scaffold0009 (1 HSPs) |
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[»] scaffold0031 (1 HSPs) |
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[»] scaffold0490 (1 HSPs) |
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[»] scaffold0186 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 27)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 102 - 315
Target Start/End: Complemental strand, 10032170 - 10031956
Alignment:
Q |
102 |
aaataacgatttagattaagagagataaacacctccatgcaagatatgagagaactccaaattttaataatgatctacaacaaattttacaataacttat |
201 |
Q |
|
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
10032170 |
aaataacgatttaaattaagagagataaacacctccatgcaagatatgagagaactccaaattttaataatgatctacaacaaattttacaataacttat |
10032071 |
T |
|
Q |
202 |
caattacgaaatggtcttgttaacgagtacccccggg-tactctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttcc |
300 |
Q |
|
|
||||||||||| |||| |||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
T |
10032070 |
caattacgaaagtgtctcgttaacgagtgcccccgggacactctttaagcattccaaaattagtaattatttttttaaaaagttaaatgtttcgatttcc |
10031971 |
T |
|
Q |
301 |
aatgcattgattaca |
315 |
Q |
|
|
||||||||||||||| |
|
|
T |
10031970 |
aatgcattgattaca |
10031956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 240 - 315
Target Start/End: Original strand, 1360532 - 1360607
Alignment:
Q |
240 |
actctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgattaca |
315 |
Q |
|
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
T |
1360532 |
actctttaagcattccaaaattagtaattattttttaaaaaagttaaatgtttcgatttccaatgcattgattaca |
1360607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 30216145 - 30216080
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||||||||| ||| |||||||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
T |
30216145 |
tctgatgctaggaaaccgaaagtgtcaaaagcaaatggtataaaaacatgttgattgtcaaaacac |
30216080 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 40726567 - 40726501
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacaca |
83 |
Q |
|
|
|||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||| |||||| |
|
|
T |
40726567 |
tctgatgctatgaagccgaaagtgtcaaaaacaaatggtataaaaacatgttgattgtcagaacaca |
40726501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 5825293 - 5825358
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||| ||||| || ||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
T |
5825293 |
tctggtgctaggatgccgaaagtgtcaaaagtaaatggtataaaaacatgttgattgtcataacac |
5825358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 28517374 - 28517309
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||||||||| |||| | ||||||||||||| | ||||||||||||||||||||||||| |||||| |
|
|
T |
28517374 |
tctgatgctaggaagtcaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtctaaacac |
28517309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 317
Target Start/End: Complemental strand, 8920837 - 8920736
Alignment:
Q |
216 |
tcttgttaacgagtacccccgggtactctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgattaca |
315 |
Q |
|
|
|||||||||||| | |||||| | |||||||||||||||||||| || ||||| |||||| ||||||||| ||||||||||||||||||||| |
|
|
T |
8920837 |
tcttgttaacgaattcccccgagcactctttaagcattccaaaaggagaaattattccatagaaaagtcaaatgtttcaatttccaatgcattgattaca |
8920738 |
T |
|
Q |
316 |
ta |
317 |
Q |
|
|
|| |
|
|
T |
8920737 |
ta |
8920736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 19277313 - 19277378
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||| ||||| ||| |||||||||||||||| | ||||||||||| |||||||||||||| ||||| |
|
|
T |
19277313 |
tctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac |
19277378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 22198006 - 22198063
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgt |
74 |
Q |
|
|
|||||||||| ||| ||||||||| |||||| | |||||||||||||||||||||||| |
|
|
T |
22198006 |
tctgatgctaggaaaccgaaagtgacaaaagcaaatggtataaaaacatgttgattgt |
22198063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 22239815 - 22239758
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgt |
74 |
Q |
|
|
|||||||||| ||| ||||||||| |||||| | |||||||||||||||||||||||| |
|
|
T |
22239815 |
tctgatgctaggaaaccgaaagtgacaaaagcaaatggtataaaaacatgttgattgt |
22239758 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 45613914 - 45613863
Alignment:
Q |
32 |
ccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacaca |
83 |
Q |
|
|
||||||||||||||| | |||||||||||||||||||||||||| |||||| |
|
|
T |
45613914 |
ccgaaagtgtcaaaatcaaatggtataaaaacatgttgattgtcagaacaca |
45613863 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 15995922 - 15995967
Alignment:
Q |
277 |
aaaaagttaaatgtttcgatttccaatgcattgattacatatattt |
322 |
Q |
|
|
|||||||||||| ||||||||| |||||||||||||||| |||||| |
|
|
T |
15995922 |
aaaaagttaaatatttcgattttcaatgcattgattacacatattt |
15995967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 21326909 - 21326860
Alignment:
Q |
33 |
cgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
||||||||||||||| | ||||||||||| |||||||||||||| ||||| |
|
|
T |
21326909 |
cgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac |
21326860 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 27521491 - 27521556
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||||||||| ||| || ||||||||||||||| || ||||||| |||||||||||||| ||||| |
|
|
T |
27521491 |
tctgatgctaggaaaccaaaagtgtcaaaagtaaattgtataaatgcatgttgattgtcagaacac |
27521556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 24527626 - 24527674
Alignment:
Q |
34 |
gaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||||||||||||| | ||||||||||| |||||||||||||| ||||| |
|
|
T |
24527626 |
gaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac |
24527674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 28770446 - 28770502
Alignment:
Q |
214 |
ggtcttgttaacgagtacccccgggt-actctttaagcattccaaaattagtaatta |
269 |
Q |
|
|
|||||||||||||||| || ||||| ||||||||||||| |||||||||||||||| |
|
|
T |
28770446 |
ggtcttgttaacgagtgcctccggggcactctttaagcatcccaaaattagtaatta |
28770502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 48539216 - 48539260
Alignment:
Q |
32 |
ccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtca |
76 |
Q |
|
|
|||||||||||||||| | ||||||||||| |||||||||||||| |
|
|
T |
48539216 |
ccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtca |
48539260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 10032259 - 10032192
Alignment:
Q |
16 |
atctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacaca |
83 |
Q |
|
|
|||| |||||||||||| |||| | ||||||| | || |||||||||||| |||||||||| |||||| |
|
|
T |
10032259 |
atctaatgctaagaagctgaaaatatcaaaagcaaatagtataaaaacatattgattgtcagaacaca |
10032192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 33887962 - 33887886
Alignment:
Q |
240 |
actctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgattacat |
316 |
Q |
|
|
||||||||||||||||||||| | |||||| ||||||| |||| |||| |||| ||||||||||||||||| |
|
|
T |
33887962 |
actctttaagcattccaaaataaataattattctttaaaaaagtcaaatatttcaattttcaatgcattgattacat |
33887886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 982984 - 983034
Alignment:
Q |
32 |
ccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||||||| ||||||| | ||||||||||| |||||||||||||| ||||| |
|
|
T |
982984 |
ccgaaagtatcaaaagcaaatggtataaaagcatgttgattgtcagaacac |
983034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 315
Target Start/End: Complemental strand, 17157842 - 17157804
Alignment:
Q |
277 |
aaaaagttaaatgtttcgatttccaatgcattgattaca |
315 |
Q |
|
|
||||||| ||||||||| ||||||||||||||||||||| |
|
|
T |
17157842 |
aaaaagtcaaatgtttcaatttccaatgcattgattaca |
17157804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 267
Target Start/End: Original strand, 27123243 - 27123297
Alignment:
Q |
214 |
ggtcttgttaacgagtaccccc-gggtactctttaagcattccaaaattagtaat |
267 |
Q |
|
|
|||||||||||||||| ||||| ||| ||||||||||||| ||||| |||||||| |
|
|
T |
27123243 |
ggtcttgttaacgagtgcccccggggcactctttaagcatcccaaatttagtaat |
27123297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 676446 - 676401
Alignment:
Q |
277 |
aaaaagttaaatgtttcgatttccaatgcattgattacatatattt |
322 |
Q |
|
|
|||||||||||| ||||||||| ||||||||||||||| |||||| |
|
|
T |
676446 |
aaaaagttaaatatttcgattttaaatgcattgattacacatattt |
676401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 3256700 - 3256655
Alignment:
Q |
277 |
aaaaagttaaatgtttcgatttccaatgcattgattacatatattt |
322 |
Q |
|
|
||||||| |||||||||||||||||||||| ||| |||| |||||| |
|
|
T |
3256700 |
aaaaagtcaaatgtttcgatttccaatgcactgaatacacatattt |
3256655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 14574766 - 14574811
Alignment:
Q |
277 |
aaaaagttaaatgtttcgatttccaatgcattgattacatatattt |
322 |
Q |
|
|
|||||||||||| |||||||| |||||||||||||||| |||||| |
|
|
T |
14574766 |
aaaaagttaaatacttcgattttcaatgcattgattacacatattt |
14574811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 16878740 - 16878785
Alignment:
Q |
277 |
aaaaagttaaatgtttcgatttccaatgcattgattacatatattt |
322 |
Q |
|
|
|||||||||||| |||||||| |||||||||||||||| |||||| |
|
|
T |
16878740 |
aaaaagttaaatatttcgattctcaatgcattgattacaaatattt |
16878785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 315
Target Start/End: Original strand, 27359396 - 27359428
Alignment:
Q |
283 |
ttaaatgtttcgatttccaatgcattgattaca |
315 |
Q |
|
|
|||||| |||||||||||||||||||||||||| |
|
|
T |
27359396 |
ttaaatatttcgatttccaatgcattgattaca |
27359428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 22)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 215 - 315
Target Start/End: Original strand, 779056 - 779156
Alignment:
Q |
215 |
gtcttgttaacgagtaccccc-gggtactctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgatta |
313 |
Q |
|
|
||||||||||||||| ||||| ||| ||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
T |
779056 |
gtcttgttaacgagtgccccctgggcactctttaaacattcaaaaattagtaattatttttt-aaaaagttaaatgtttcgatttccaatgcattgatta |
779154 |
T |
|
Q |
314 |
ca |
315 |
Q |
|
|
|| |
|
|
T |
779155 |
ca |
779156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 13166997 - 13166932
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||||||||| |||||||||||||||||||| | ||||||||||| |||||||||||||| ||||| |
|
|
T |
13166997 |
tctgatgctaggaagccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac |
13166932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 33692142 - 33692077
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
||||||||||||||||||||||||||||||| | |||||| |||| |||||||||||||| ||||| |
|
|
T |
33692142 |
tctgatgctaagaagccgaaagtgtcaaaagcaaatggtacaaaagcatgttgattgtcataacac |
33692077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 35310468 - 35310532
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaaca |
81 |
Q |
|
|
|||||||| | |||||||||||||||||||| ||||||||||||| |||||||||||||| |||| |
|
|
T |
35310468 |
tctgatgccaggaagccgaaagtgtcaaaagcagatggtataaaagcatgttgattgtcagaaca |
35310532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 25663119 - 25663054
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||||||||| ||||| |||||||||||||| | |||||||||||||||||||||| ||| ||||| |
|
|
T |
25663119 |
tctgatgctaggaagctgaaagtgtcaaaagcaaatggtataaaaacatgttgattatcagaacac |
25663054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 37873725 - 37873660
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||| ||||| |||||| ||||||||||||| | |||||||||||||||||||||||||| ||||| |
|
|
T |
37873725 |
tctggtgctaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtcagaacac |
37873660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 430622 - 430686
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaaca |
81 |
Q |
|
|
|||||||||| |||| | ||||||||||||| | ||||||||||| |||||||||||||| |||| |
|
|
T |
430622 |
tctgatgctatgaagacaaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaaca |
430686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 18229738 - 18229683
Alignment:
Q |
214 |
ggtcttgttaacgagtacccccgggtactctttaagcattccaaaattagtaatta |
269 |
Q |
|
|
|||||||||||||||| ||||| ||||||||||||||| ||||| |||||||||| |
|
|
T |
18229738 |
ggtcttgttaacgagtgcccccaagtactctttaagcatcccaaatttagtaatta |
18229683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 315
Target Start/End: Original strand, 31672380 - 31672483
Alignment:
Q |
214 |
ggtcttgttaacgagtaccccc-gggtactctttaagcattccaaaattagtaatta-nnnnnnnaaaaagttaaatgtttcgatttccaatgcattgat |
311 |
Q |
|
|
|||||||||||||||| ||||| ||| |||||||||||||||||||| || || || ||||||| ||||||||| ||||||||||||||||| |
|
|
T |
31672380 |
ggtcttgttaacgagtgcccccggggcactctttaagcattccaaaaggagaaactattccataaaaaaagtcaaatgtttcaatttccaatgcattgat |
31672479 |
T |
|
Q |
312 |
taca |
315 |
Q |
|
|
|||| |
|
|
T |
31672480 |
taca |
31672483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 38875658 - 38875724
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacaca |
83 |
Q |
|
|
|||| ||||| ||||| ||||||||||||| | |||||| ||||||||||||||||||| |||||| |
|
|
T |
38875658 |
tctggtgctaggaagctgaaagtgtcaaaaacaaatggtacaaaaacatgttgattgtcagaacaca |
38875724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 27336713 - 27336778
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||||||||| |||||| |||||||||||| | ||||||||||| ||||||||||||| ||||| |
|
|
T |
27336713 |
tctgatgctaggaagccacaagtgtcaaaagcaaatggtataaaagtatgttgattgtcagaacac |
27336778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 315
Target Start/End: Original strand, 41583512 - 41583614
Alignment:
Q |
214 |
ggtcttgttaacgagtacccccgggt-actctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgatt |
312 |
Q |
|
|
|||||||||||||||| ||||||||| |||||||||| || ||||| |||| ||||| |||||||||||| || | | |||||||||||||| | |
|
|
T |
41583512 |
ggtcttgttaacgagtgcccccgggtcactctttaaggatcccaaatttagaaattattccttcaaaaagttaaatattacaaattccaatgcattgaat |
41583611 |
T |
|
Q |
313 |
aca |
315 |
Q |
|
|
||| |
|
|
T |
41583612 |
aca |
41583614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 42921717 - 42921782
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||| ||||| ||| |||||||||||| ||| | ||||||||||| |||||||||||||| ||||| |
|
|
T |
42921717 |
tctggtgctaggaaaccgaaagtgtcataagcaaatggtataaaagcatgttgattgtcagaacac |
42921782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 9829421 - 9829373
Alignment:
Q |
35 |
aaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacaca |
83 |
Q |
|
|
||||||||||| || ||||||||||| ||||||||||||||||||||| |
|
|
T |
9829421 |
aaagtgtcaaatataaatggtataaaagcatgttgattgtcaaaacaca |
9829373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 14423715 - 14423763
Alignment:
Q |
34 |
gaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||||||||||||| | ||||||||||| |||||||||||||| ||||| |
|
|
T |
14423715 |
gaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac |
14423763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 30501277 - 30501221
Alignment:
Q |
214 |
ggtcttgttaacgagtaccccc-gggtactctttaagcattccaaaattagtaatta |
269 |
Q |
|
|
|||||||||||||||| ||||| ||| ||||||||||||| ||||| |||||||||| |
|
|
T |
30501277 |
ggtcttgttaacgagtgcccccagggcactctttaagcatcccaaatttagtaatta |
30501221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 30541620 - 30541564
Alignment:
Q |
214 |
ggtcttgttaacgagtaccccc-gggtactctttaagcattccaaaattagtaatta |
269 |
Q |
|
|
|||||||||||||||| ||||| ||| ||||||||||||| ||||| |||||||||| |
|
|
T |
30541620 |
ggtcttgttaacgagtgcccccagggcactctttaagcatcccaaatttagtaatta |
30541564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 43129569 - 43129619
Alignment:
Q |
32 |
ccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||||| ||||||||| | |||||| ||||||||||||||||||| ||||| |
|
|
T |
43129569 |
ccgaaaatgtcaaaagcaaatggtagaaaaacatgttgattgtcagaacac |
43129619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 28793368 - 28793413
Alignment:
Q |
277 |
aaaaagttaaatgtttcgatttccaatgcattgattacatatattt |
322 |
Q |
|
|
||||||| |||| ||||||||||| ||||||| ||||||||||||| |
|
|
T |
28793368 |
aaaaagtcaaatatttcgatttccgatgcattaattacatatattt |
28793413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 251
Target Start/End: Complemental strand, 17692397 - 17692365
Alignment:
Q |
219 |
tgttaacgagtacccccgggtactctttaagca |
251 |
Q |
|
|
||||||||||| ||||||||||||||||||||| |
|
|
T |
17692397 |
tgttaacgagtgcccccgggtactctttaagca |
17692365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 315
Target Start/End: Original strand, 29342366 - 29342398
Alignment:
Q |
283 |
ttaaatgtttcgatttccaatgcattgattaca |
315 |
Q |
|
|
||||||||||| ||||||||||||||||||||| |
|
|
T |
29342366 |
ttaaatgtttcaatttccaatgcattgattaca |
29342398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 322
Target Start/End: Complemental strand, 42338067 - 42338035
Alignment:
Q |
290 |
tttcgatttccaatgcattgattacatatattt |
322 |
Q |
|
|
||||||||||||||||||||||||||| ||||| |
|
|
T |
42338067 |
tttcgatttccaatgcattgattacatgtattt |
42338035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 22)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 214 - 316
Target Start/End: Complemental strand, 48322342 - 48322240
Alignment:
Q |
214 |
ggtcttgttaacgagtacccccgggtactctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgatta |
313 |
Q |
|
|
||||||||||||||||| | ||||||||||||||||||| ||||| |||||||| ||||||| ||||||||||||||||||| ||||||||| |
|
|
T |
48322342 |
ggtcttgttaacgagtattcaggggtactctttaagcattctaaaataagtaattatttttttaaaaagtcaaatgtttcgatttccaatacattgatta |
48322243 |
T |
|
Q |
314 |
cat |
316 |
Q |
|
|
||| |
|
|
T |
48322242 |
cat |
48322240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 26772778 - 26772843
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||||||||| |||||| ||||||||||||| | ||||||||||| |||||||||||||| ||||| |
|
|
T |
26772778 |
tctgatgctaggaagccaaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac |
26772843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 38146076 - 38146141
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||| ||||| |||| | ||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
T |
38146076 |
tctggtgctaggaagtcaaaagtgtcaaatgtaaatggtataaaaacatgttgattgtcaaaacac |
38146141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 7900878 - 7900937
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtca |
76 |
Q |
|
|
|||||||||| ||||||||||||||||||| | ||||||||||| |||||||||||||| |
|
|
T |
7900878 |
tctgatgctaggaagccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtca |
7900937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 37133086 - 37133021
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||| ||||||||| |||||||||| |||| | |||||||||||||||||||||||||| ||||| |
|
|
T |
37133086 |
tctggtgctaagaaaccgaaagtgtaaaaaacaaatggtataaaaacatgttgattgtcagaacac |
37133021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 53785729 - 53785794
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||| ||||| ||| |||||||||||||||| | ||||||||||| |||||||||||||| ||||| |
|
|
T |
53785729 |
tctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac |
53785794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 26856833 - 26856784
Alignment:
Q |
33 |
cgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||||| |||||||| ||||||||||||| |||||||||||||| ||||| |
|
|
T |
26856833 |
cgaaagcgtcaaaagcagatggtataaaagcatgttgattgtcacaacac |
26856784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 44198795 - 44198852
Alignment:
Q |
25 |
taagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||||| |||||||||||||||| | ||||||||||| |||||||||| ||| ||||| |
|
|
T |
44198795 |
taagaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattctcagaacac |
44198852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 52741599 - 52741534
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||| ||||| ||| || ||||||||||||| | ||||||||||| |||||||||||||| ||||| |
|
|
T |
52741599 |
tctggtgctaggaaaccaaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac |
52741534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 51234636 - 51234700
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaaca |
81 |
Q |
|
|
|||||||||| ||| |||||||||||||| || ||||||||||| ||||||| |||||| |||| |
|
|
T |
51234636 |
tctgatgctagaaagtcgaaagtgtcaaaaataaatggtataaaagcatgttggttgtcataaca |
51234700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 5338668 - 5338723
Alignment:
Q |
22 |
tgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaa |
77 |
Q |
|
|
||||| |||||||||||||||||||| | || |||||||| |||||||| |||||| |
|
|
T |
5338668 |
tgctaggaagccgaaagtgtcaaaagcaaattgtataaaagcatgttgactgtcaa |
5338723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 325
Target Start/End: Original strand, 34758898 - 34759010
Alignment:
Q |
214 |
ggtcttgttaacgagtacccccgggt-actctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgatt |
312 |
Q |
|
|
|||||||||||||||| || ||||| |||||||||| |||| |||| |||||||| ||||||| |||| |||||| | | ||||||||||| |
|
|
T |
34758898 |
ggtcttgttaacgagtgcctccggggcactctttaaggattcaaaaagaagtaattattttataaaaaagtgaaatatttcgactcctgatgcattgatt |
34758997 |
T |
|
Q |
313 |
acatatatttcca |
325 |
Q |
|
|
||||||||||||| |
|
|
T |
34758998 |
acatatatttcca |
34759010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 277 - 316
Target Start/End: Original strand, 40546360 - 40546399
Alignment:
Q |
277 |
aaaaagttaaatgtttcgatttccaatgcattgattacat |
316 |
Q |
|
|
||||||| |||| ||||||||||||||||||||||||||| |
|
|
T |
40546360 |
aaaaagtcaaatatttcgatttccaatgcattgattacat |
40546399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 315
Target Start/End: Complemental strand, 36600545 - 36600507
Alignment:
Q |
277 |
aaaaagttaaatgtttcgatttccaatgcattgattaca |
315 |
Q |
|
|
|||||||||||| ||||||||||| |||||||||||||| |
|
|
T |
36600545 |
aaaaagttaaatttttcgatttcccatgcattgattaca |
36600507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 16867590 - 16867537
Alignment:
Q |
216 |
tcttgttaacgagtacccccgggtactctttaagcattccaaaattagtaatta |
269 |
Q |
|
|
||||||||| || |||| |||| ||||||||||||||||| |||| |||||||| |
|
|
T |
16867590 |
tcttgttaaggattacctccggatactctttaagcattcctaaataagtaatta |
16867537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 25548271 - 25548226
Alignment:
Q |
277 |
aaaaagttaaatgtttcgatttccaatgcattgattacatatattt |
322 |
Q |
|
|
|||||||||||| |||| ||||| ||||||||||||||| |||||| |
|
|
T |
25548271 |
aaaaagttaaatatttcaatttctaatgcattgattacacatattt |
25548226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 38670967 - 38670902
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||||||||| ||||| |||||||||||| | || |||||||| |||||||||||||| ||||| |
|
|
T |
38670967 |
tctgatgctagaaagccaaaagtgtcaaaaacaaattgtataaaagcatgttgattgtcagaacac |
38670902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 40392425 - 40392470
Alignment:
Q |
277 |
aaaaagttaaatgtttcgatttccaatgcattgattacatatattt |
322 |
Q |
|
|
|||||||||||| ||| ||||| |||||||||||||||||||||| |
|
|
T |
40392425 |
aaaaagttaaatatttttatttctaatgcattgattacatatattt |
40392470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 49017988 - 49018049
Alignment:
Q |
22 |
tgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacaca |
83 |
Q |
|
|
||||| ||| |||||||||| |||| | |||||||||||||||||||||||| | |||||| |
|
|
T |
49017988 |
tgctaggaaaccgaaagtgtaaaaaaaaaatggtataaaaacatgttgattgttagaacaca |
49018049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 52411966 - 52411913
Alignment:
Q |
29 |
aagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||| |||||||||||||| | |||| |||||| |||||||||||||| ||||| |
|
|
T |
52411966 |
aagctgaaagtgtcaaaagcaaatggaataaaagcatgttgattgtcagaacac |
52411913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 322
Target Start/End: Original strand, 55110068 - 55110105
Alignment:
Q |
285 |
aaatgtttcgatttccaatgcattgattacatatattt |
322 |
Q |
|
|
|||| ||||||||| ||||||||||||||||||||||| |
|
|
T |
55110068 |
aaatatttcgattttcaatgcattgattacatatattt |
55110105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 29611989 - 29612045
Alignment:
Q |
214 |
ggtcttgttaacgagtacccccggg-tactctttaagcattccaaaattagtaatta |
269 |
Q |
|
|
|||||||||||||||| |||||||| ||||||||| ||||| ||||| |||||||| |
|
|
T |
29611989 |
ggtcttgttaacgagtgcccccgggacactctttaaacattctaaaataagtaatta |
29612045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 17249392 - 17249326
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacaca |
83 |
Q |
|
|
|||||||||| |||||| ||||||||||||| | ||||||||||| |||||||||||||| |||||| |
|
|
T |
17249392 |
tctgatgctaggaagccaaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacaca |
17249326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 33220795 - 33220733
Alignment:
Q |
20 |
gatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
||||||| |||||||||||||||||||| | ||||||||||| ||||||||||||||| |||| |
|
|
T |
33220795 |
gatgctaggaagccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcaacacac |
33220733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 34304515 - 34304581
Alignment:
Q |
16 |
atctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
||||||||||| |||||| ||||||||||||| | ||||||||||| |||||||||||||| ||||| |
|
|
T |
34304515 |
atctgatgctaggaagcccaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac |
34304581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 34554365 - 34554299
Alignment:
Q |
16 |
atctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
||||| ||||| ||||||||| |||||||||||| ||||||||||||||| |||||| ||| ||||| |
|
|
T |
34554365 |
atctggtgctaggaagccgaatgtgtcaaaagtaaatggtataaaaacatcttgattatcagaacac |
34554299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 45764 - 45699
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||| ||||||||| ||||||||||||||| | |||| |||||| |||||||||||||| ||||| |
|
|
T |
45764 |
tctggtgctaagaaaccgaaagtgtcaaaaacaaatggaataaaagcatgttgattgtcagaacac |
45699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 4166009 - 4165944
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||| ||||| ||| |||||||||||||||| | ||| ||||||| |||||||||||||| ||||| |
|
|
T |
4166009 |
tctggtgctaggaacccgaaagtgtcaaaagcaaatgatataaaagcatgttgattgtcagaacac |
4165944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 959600 - 959665
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||| ||||| ||| |||||| |||||||| | |||||||||| ||||||||||||||| ||||| |
|
|
T |
959600 |
tctggtgctaggaaaccgaaaatgtcaaaaacaaatggtataaagacatgttgattgtcagaacac |
959665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 4206683 - 4206618
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||| ||||| ||| |||||||||||||||| | ||| ||||||| |||||| ||||||| ||||| |
|
|
T |
4206683 |
tctggtgctaggaacccgaaagtgtcaaaagcaaatgatataaaagcatgttcattgtcagaacac |
4206618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 318
Target Start/End: Complemental strand, 13070715 - 13070674
Alignment:
Q |
277 |
aaaaagttaaatgtttcgatttccaatgcattgattacatat |
318 |
Q |
|
|
||||||||||||||| |||||||||| |||||||||||||| |
|
|
T |
13070715 |
aaaaagttaaatgttgtgatttccaatacattgattacatat |
13070674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 3714942 - 3714994
Alignment:
Q |
22 |
tgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgt |
74 |
Q |
|
|
|||||||||| | |||||||||||| ||||| |||||||||||||| ||||| |
|
|
T |
3714942 |
tgctaagaagtcaaaagtgtcaaaaacagatgatataaaaacatgttaattgt |
3714994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 14)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 3187989 - 3188054
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||||||||| |||||||||||| ||||||| | ||||||||||| |||||||||||||| ||||| |
|
|
T |
3187989 |
tctgatgctaggaagccgaaagtttcaaaagcaaatggtataaaagcatgttgattgtcagaacac |
3188054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 215 - 317
Target Start/End: Complemental strand, 42760282 - 42760180
Alignment:
Q |
215 |
gtcttgttaacgagtacccccgggtactctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgattac |
314 |
Q |
|
|
||||||||||||||| |||| || |||||||||||||||||||| || ||||| ||||| | ||||||||| |||||||||||||||||||| |
|
|
T |
42760282 |
gtcttgttaacgagttcccctggacactctttaagcattccaaaaggagaaattattccataaaaaaatcaaatgtttcaatttccaatgcattgattac |
42760183 |
T |
|
Q |
315 |
ata |
317 |
Q |
|
|
||| |
|
|
T |
42760182 |
ata |
42760180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 38815314 - 38815379
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||| ||||| ||||| |||||||||||||| | ||||||||||| |||||||||||||| ||||| |
|
|
T |
38815314 |
tctggtgctaggaagcggaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac |
38815379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 500262 - 500312
Alignment:
Q |
32 |
ccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||||| ||||||||||| ||||||||||| |||||||||||||| ||||| |
|
|
T |
500262 |
ccgaaaatgtcaaaagtaaatggtataaaagcatgttgattgtcagaacac |
500312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 25021901 - 25021835
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacaca |
83 |
Q |
|
|
|||| ||||| |||||| ||| ||||||||| | |||||||||||||||||||||||| | |||||| |
|
|
T |
25021901 |
tctggtgctaggaagccaaaaatgtcaaaagaaaatggtataaaaacatgttgattgtgagaacaca |
25021835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 39434687 - 39434752
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||||||||| |||| | |||||||||||| | ||||||||||| |||||||||||||| ||||| |
|
|
T |
39434687 |
tctgatgctaggaagtcaaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcagaacac |
39434752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 9200007 - 9200051
Alignment:
Q |
214 |
ggtcttgttaacgagtacccccgggtactctttaagcattccaaa |
258 |
Q |
|
|
|||||||||||||||||||||| ||||||||||||| || ||||| |
|
|
T |
9200007 |
ggtcttgttaacgagtacccccaggtactctttaaggatcccaaa |
9200051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 27055945 - 27055981
Alignment:
Q |
279 |
aaagttaaatgtttcgatttccaatgcattgattaca |
315 |
Q |
|
|
|||||||||||||||||||||||||| |||||||||| |
|
|
T |
27055945 |
aaagttaaatgtttcgatttccaatgtattgattaca |
27055981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 322
Target Start/End: Original strand, 31206279 - 31206388
Alignment:
Q |
214 |
ggtcttgttaacgagtacccccg-ggtactctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgatt |
312 |
Q |
|
|
|||||||||||||||| ||| || ||||||||||||| |||| |||| ||| ||||| ||||| | |||| ||| ||||||| ||||||||||| |
|
|
T |
31206279 |
ggtcttgttaacgagtccccacgaggtactctttaaggattcaaaaagtagaaattattttataaaaaaatcaaatattttgatttccgatgcattgatt |
31206378 |
T |
|
Q |
313 |
acatatattt |
322 |
Q |
|
|
||| |||||| |
|
|
T |
31206379 |
acacatattt |
31206388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 22209439 - 22209484
Alignment:
Q |
277 |
aaaaagttaaatgtttcgatttccaatgcattgattacatatattt |
322 |
Q |
|
|
|||||||||||| ||| ||||||||| |||||||||||||||||| |
|
|
T |
22209439 |
aaaaagttaaatattttgatttccaagacattgattacatatattt |
22209484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 36004164 - 36004201
Alignment:
Q |
39 |
tgtcaaaagtagatggtataaaaacatgttgattgtca |
76 |
Q |
|
|
||||||| ||| |||||||||||||||||||||||||| |
|
|
T |
36004164 |
tgtcaaatgtaaatggtataaaaacatgttgattgtca |
36004201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 38956917 - 38956962
Alignment:
Q |
277 |
aaaaagttaaatgtttcgatttccaatgcattgattacatatattt |
322 |
Q |
|
|
||||||| |||| ||||||||||| |||||||||||||| |||||| |
|
|
T |
38956917 |
aaaaagtcaaatatttcgatttccgatgcattgattacacatattt |
38956962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 16723332 - 16723276
Alignment:
Q |
214 |
ggtcttgttaacgagt-acccccgggtactctttaagcattccaaaattagtaatta |
269 |
Q |
|
|
|||||||||||||||| ||||| ||| ||||||||||||| ||||| || ||||||| |
|
|
T |
16723332 |
ggtcttgttaacgagtgaccccagggcactctttaagcatcccaaattttgtaatta |
16723276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 313
Target Start/End: Original strand, 40299689 - 40299717
Alignment:
Q |
285 |
aaatgtttcgatttccaatgcattgatta |
313 |
Q |
|
|
||||||||||||||||||||||||||||| |
|
|
T |
40299689 |
aaatgtttcgatttccaatgcattgatta |
40299717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 25)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 20259884 - 20259819
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||| ||||||||| ||||||||||||| | || |||||||||||||||||||||||||| ||||| |
|
|
T |
20259884 |
tctggtgctaagaaaccgaaagtgtcaacaataaatggtataaaaacatgttgattgtcagaacac |
20259819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 313
Target Start/End: Original strand, 34445638 - 34445738
Alignment:
Q |
214 |
ggtcttgttaacgagtacccccgg-gtactctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgatt |
312 |
Q |
|
|
|||||||||||||||| ||||||| | |||||||||| ||||||||| || ||||| ||||||| |||| ||||||||||||||||||||||| |
|
|
T |
34445638 |
ggtcttgttaacgagtgcccccggagcactctttaaggattccaaaagaagaaattaatttataaaaaagtcaaatatttcgatttccaatgcattgatt |
34445737 |
T |
|
Q |
313 |
a |
313 |
Q |
|
|
| |
|
|
T |
34445738 |
a |
34445738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 28041214 - 28041148
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacaca |
83 |
Q |
|
|
|||| ||||| ||| |||||||||||||||| | ||||||||||||| |||||||||||| |||||| |
|
|
T |
28041214 |
tctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaaacctgttgattgtcagaacaca |
28041148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 4039675 - 4039630
Alignment:
Q |
277 |
aaaaagttaaatgtttcgatttccaatgcattgattacatatattt |
322 |
Q |
|
|
||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
T |
4039675 |
aaaaagtcaaatatttcgatttccaatgcattgattacatatattt |
4039630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 19035467 - 19035532
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||| ||||| ||| ||| |||||||||||||| ||||||||||| |||||||||||||| ||||| |
|
|
T |
19035467 |
tctggtgctaggaaaccgtaagtgtcaaaagtaaatggtataaaagcatgttgattgtcagaacac |
19035532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 29169880 - 29169815
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||| ||||| ||| |||||||||||||||| | ||||||||||| |||||||||||||| ||||| |
|
|
T |
29169880 |
tctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac |
29169815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 2764499 - 2764557
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtc |
75 |
Q |
|
|
|||||||||| ||||| |||||||||||||| | |||| |||||| ||||||||||||| |
|
|
T |
2764499 |
tctgatgctaggaagctgaaagtgtcaaaagaaaatggcataaaagcatgttgattgtc |
2764557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 21473042 - 21473088
Alignment:
Q |
36 |
aagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||||||||||| | |||||||||||||||||||||||||| ||||| |
|
|
T |
21473042 |
aagtgtcaaaagcaaatggtataaaaacatgttgattgtcagaacac |
21473088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 17112739 - 17112784
Alignment:
Q |
277 |
aaaaagttaaatgtttcgatttccaatgcattgattacatatattt |
322 |
Q |
|
|
||||||| |||| ||| ||||||||||||||||||||||||||||| |
|
|
T |
17112739 |
aaaaagtcaaatattttgatttccaatgcattgattacatatattt |
17112784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 318
Target Start/End: Complemental strand, 33744245 - 33744167
Alignment:
Q |
240 |
actctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgattacatat |
318 |
Q |
|
|
|||||||||||||| ||||| |||||||| ||||||| |||| ||||||||| ||||||||||||||||||| |
|
|
T |
33744245 |
actctttaagcattttaaaataagtaattatttttttaaaaagtcaaatatttcgattttcaatgcattgattacatat |
33744167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 34644586 - 34644651
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||||||||| ||||||||||||||||||| | ||||||||||| ||||| | |||||| ||||| |
|
|
T |
34644586 |
tctgatgctaggaagccgaaagtgtcaaaaacaaatggtataaaagcatgtaggttgtcagaacac |
34644651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 322
Target Start/End: Complemental strand, 36321735 - 36321653
Alignment:
Q |
240 |
actctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgattacatatattt |
322 |
Q |
|
|
||||||||||||| |||||| |||||||| |||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
T |
36321735 |
actctttaagcataccaaaacaagtaattattctttagaaaagttaaacatttcgatttccaatgcattgattacatgtattt |
36321653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 43831645 - 43831600
Alignment:
Q |
35 |
aaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaac |
80 |
Q |
|
|
||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
T |
43831645 |
aaagtgtcacaagtcaatggtataaaaacatgttgattgtcaaaac |
43831600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 45659719 - 45659670
Alignment:
Q |
33 |
cgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
||||||||||||||| | ||||||||||| |||||||||||||| ||||| |
|
|
T |
45659719 |
cgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac |
45659670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 315
Target Start/End: Original strand, 37037645 - 37037718
Alignment:
Q |
242 |
tctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgattaca |
315 |
Q |
|
|
|||||||||||| |||| ||||||||| ||||||||||||||||| ||||||||| ||||||||||| |
|
|
T |
37037645 |
tctttaagcattttaaaaatagtaattatttttaaaaaaagttaaatgtttcaatttccaatacattgattaca |
37037718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 315
Target Start/End: Original strand, 37705847 - 37705948
Alignment:
Q |
215 |
gtcttgttaacgagtacccccgg-gtactctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgatta |
313 |
Q |
|
|
||||||||||||||| ||||||| | ||||||||||||||| ||||| |||||||| |||| | |||||||| ||||| ||||||||| |||| |
|
|
T |
37705847 |
gtcttgttaacgagtgcccccggagcactctttaagcattcgaaaatgagtaattattttttagaaaactcaaatgttttgattttcaatgcattaatta |
37705946 |
T |
|
Q |
314 |
ca |
315 |
Q |
|
|
|| |
|
|
T |
37705947 |
ca |
37705948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 24177598 - 24177540
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtc |
75 |
Q |
|
|
|||||||||| ||| |||||| |||||||| | |||||||||||| |||||||||||| |
|
|
T |
24177598 |
tctgatgctaggaaaccgaaactgtcaaaaacaaatggtataaaaatatgttgattgtc |
24177540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 327
Target Start/End: Complemental strand, 40203151 - 40203101
Alignment:
Q |
277 |
aaaaagttaaatgtttcgatttccaatgcattgattacatatatttccaga |
327 |
Q |
|
|
||||||| |||| |||| ||||||||||||||||||||| |||||| |||| |
|
|
T |
40203151 |
aaaaagtcaaatatttcaatttccaatgcattgattacacatattttcaga |
40203101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 4521081 - 4521036
Alignment:
Q |
277 |
aaaaagttaaatgtttcgatttccaatgcattgattacatatattt |
322 |
Q |
|
|
||||||||||| |||| |||||||||||||||||||||| ||||| |
|
|
T |
4521081 |
aaaaagttaaacatttcaatttccaatgcattgattacatgtattt |
4521036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 318
Target Start/End: Original strand, 17554891 - 17554932
Alignment:
Q |
277 |
aaaaagttaaatgtttcgatttccaatgcattgattacatat |
318 |
Q |
|
|
||||||||||||||||| |||| |||||||||||||| |||| |
|
|
T |
17554891 |
aaaaagttaaatgtttcaatttacaatgcattgattatatat |
17554932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 38731629 - 38731694
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||| |||||||||||| ||||| ||||||| | || |||||||| ||||||||||||| ||||| |
|
|
T |
38731629 |
tctggtgctaagaagccaaaagtttcaaaagcaaattgtataaaagtatgttgattgtcagaacac |
38731694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 313
Target Start/End: Original strand, 2633064 - 2633100
Alignment:
Q |
277 |
aaaaagttaaatgtttcgatttccaatgcattgatta |
313 |
Q |
|
|
||||||||||||||||||||||||||| |||||||| |
|
|
T |
2633064 |
aaaaagttaaatgtttcgatttccaatatattgatta |
2633100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 31807917 - 31807861
Alignment:
Q |
214 |
ggtcttgttaacgagtacccccgg-gtactctttaagcattccaaaattagtaatta |
269 |
Q |
|
|
|||||||||||||||| ||||||| | ||| ||||||||||| ||||| |||||||| |
|
|
T |
31807917 |
ggtcttgttaacgagtgcccccggagcactatttaagcattctaaaataagtaatta |
31807861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 39150551 - 39150607
Alignment:
Q |
214 |
ggtcttgttaacgagtaccccc-gggtactctttaagcattccaaaattagtaatta |
269 |
Q |
|
|
|||||||||||||||| ||||| ||| ||||||||||||| | ||| |||||||||| |
|
|
T |
39150551 |
ggtcttgttaacgagtgcccccggggcactctttaagcatcctaaatttagtaatta |
39150607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 48022490 - 48022434
Alignment:
Q |
214 |
ggtcttgttaacgagtacccccg-ggtactctttaagcattccaaaattagtaatta |
269 |
Q |
|
|
|||||||||||||||| |||| | |||||||||||||||| ||| | |||||||||| |
|
|
T |
48022490 |
ggtcttgttaacgagtgcccctgtggtactctttaagcatcccatatttagtaatta |
48022434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 22)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 28225020 - 28225079
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtca |
76 |
Q |
|
|
||||| |||| |||||||||||||||||||| | ||||||||||| |||||||||||||| |
|
|
T |
28225020 |
tctgaagctaggaagccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtca |
28225079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 19161855 - 19161805
Alignment:
Q |
32 |
ccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||||||||||||||| | |||||||||||||||||||||||||| ||||| |
|
|
T |
19161855 |
ccgaaagtgtcaaaagcaaatggtataaaaacatgttgattgtcagaacac |
19161805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 315
Target Start/End: Complemental strand, 2826093 - 2825991
Alignment:
Q |
214 |
ggtcttgttaacgagtacccccg-ggtactctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgatt |
312 |
Q |
|
|
|||||||||||||||| ||| | |||||||||||||||| | ||||| || ||||| ||||||| |||| ||||||||||||||||||||||| |
|
|
T |
2826093 |
ggtcttgttaacgagtgtccctgtggtactctttaagcatactaaaataagaaattattttttaaaaaagtaaaatatttcgatttccaatgcattgatt |
2825994 |
T |
|
Q |
313 |
aca |
315 |
Q |
|
|
||| |
|
|
T |
2825993 |
aca |
2825991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 4413153 - 4413088
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||| ||||| ||| |||||||||||||||| | ||||||||||| |||||||||||||| ||||| |
|
|
T |
4413153 |
tctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac |
4413088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 41867995 - 41867931
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaaca |
81 |
Q |
|
|
|||| ||||| ||| |||||||||||||||| | ||||||||||| |||||||||||||| |||| |
|
|
T |
41867995 |
tctggtgctaggaacccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaaca |
41867931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 315
Target Start/End: Original strand, 31513785 - 31513823
Alignment:
Q |
277 |
aaaaagttaaatgtttcgatttccaatgcattgattaca |
315 |
Q |
|
|
||||| ||||||||||||||||||||||||||||||||| |
|
|
T |
31513785 |
aaaaatttaaatgtttcgatttccaatgcattgattaca |
31513823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 44941154 - 44941109
Alignment:
Q |
277 |
aaaaagttaaatgtttcgatttccaatgcattgattacatatattt |
322 |
Q |
|
|
||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
T |
44941154 |
aaaaagttaaagatttcgatttccgatgcattgattacatatattt |
44941109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 17344675 - 17344723
Alignment:
Q |
34 |
gaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||||||||||||| | ||||||||||| |||||||||||| ||||||| |
|
|
T |
17344675 |
gaaagtgtcaaaagcaaatggtataaaagcatgttgattgtgaaaacac |
17344723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 313
Target Start/End: Complemental strand, 27948084 - 27948048
Alignment:
Q |
277 |
aaaaagttaaatgtttcgatttccaatgcattgatta |
313 |
Q |
|
|
||||||| ||||||||||||||||||||||||||||| |
|
|
T |
27948084 |
aaaaagtcaaatgtttcgatttccaatgcattgatta |
27948048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 5532457 - 5532504
Alignment:
Q |
35 |
aaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
||||||||||||||| || |||||||| |||||||||||||| ||||| |
|
|
T |
5532457 |
aaagtgtcaaaagtaaatagtataaaagcatgttgattgtcacaacac |
5532504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 9685484 - 9685437
Alignment:
Q |
35 |
aaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
||||||||||||| | ||||||||||| |||||||||||||| ||||| |
|
|
T |
9685484 |
aaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac |
9685437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 315
Target Start/End: Original strand, 2888904 - 2888979
Alignment:
Q |
240 |
actctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgattaca |
315 |
Q |
|
|
|||||||||||| | ||||||| ||||||| |||||||||||| ||||||||||||||| ||||| |||| |
|
|
T |
2888904 |
actctttaagcacttcaaaatttgtaattattttttaaaaaagttaaatatttcgatttccaatgtattgactaca |
2888979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 315
Target Start/End: Complemental strand, 14102372 - 14102334
Alignment:
Q |
277 |
aaaaagttaaatgtttcgatttccaatgcattgattaca |
315 |
Q |
|
|
|||||||||||| |||||||||||||| ||||||||||| |
|
|
T |
14102372 |
aaaaagttaaatatttcgatttccaatacattgattaca |
14102334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 2769382 - 2769337
Alignment:
Q |
214 |
ggtcttgttaacgagtacccccgggtactctttaagcattccaaaa |
259 |
Q |
|
|
|||||||||||||||| |||| ||| ||||||||||||||| |||| |
|
|
T |
2769382 |
ggtcttgttaacgagtgccccggggcactctttaagcattcaaaaa |
2769337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 315
Target Start/End: Original strand, 3882585 - 3882687
Alignment:
Q |
214 |
ggtcttgttaacgagtacccccgggt-actctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgatt |
312 |
Q |
|
|
|||||||||||||||| ||| |||| ||||||||||||||| ||||| || ||||| |||| || |||| ||||| ||| ||||||||||||| |
|
|
T |
3882585 |
ggtcttgttaacgagtgccctcggggcactctttaagcattctaaaataagcaattattctttaaaaaggtcaaatatttcggttttcaatgcattgatt |
3882684 |
T |
|
Q |
313 |
aca |
315 |
Q |
|
|
||| |
|
|
T |
3882685 |
aca |
3882687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 5962036 - 5961991
Alignment:
Q |
277 |
aaaaagttaaatgtttcgatttccaatgcattgattacatatattt |
322 |
Q |
|
|
||||| |||||| |||| ||||||||||||||||||||||| |||| |
|
|
T |
5962036 |
aaaaaattaaatatttcaatttccaatgcattgattacataaattt |
5961991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 6761799 - 6761754
Alignment:
Q |
277 |
aaaaagttaaatgtttcgatttccaatgcattgattacatatattt |
322 |
Q |
|
|
||||||| |||| |||| ||||||||||||||||||||||| |||| |
|
|
T |
6761799 |
aaaaagtcaaatatttcaatttccaatgcattgattacataaattt |
6761754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 7271813 - 7271858
Alignment:
Q |
277 |
aaaaagttaaatgtttcgatttccaatgcattgattacatatattt |
322 |
Q |
|
|
||||||| |||| ||| |||||||||||||||||||||||||||| |
|
|
T |
7271813 |
aaaaagtcaaatatttttatttccaatgcattgattacatatattt |
7271858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 19495237 - 19495274
Alignment:
Q |
278 |
aaaagttaaatgtttcgatttccaatgcattgattaca |
315 |
Q |
|
|
|||||| |||| |||||||||||||||||||||||||| |
|
|
T |
19495237 |
aaaagtcaaatatttcgatttccaatgcattgattaca |
19495274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 20142794 - 20142753
Alignment:
Q |
35 |
aaagtgtcaaaagtagatggtataaaaacatgttgattgtca |
76 |
Q |
|
|
||||||||||||| | ||||||||||| |||||||||||||| |
|
|
T |
20142794 |
aaagtgtcaaaagaaaatggtataaaagcatgttgattgtca |
20142753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 4762314 - 4762374
Alignment:
Q |
210 |
aaatggtcttgttaacgagtacccccgggt-actctttaagcattccaaaattagtaatta |
269 |
Q |
|
|
|||||||||||||||||||| | ||||| | ||| ||||||||| ||||| |||||||||| |
|
|
T |
4762314 |
aaatggtcttgttaacgagtgctcccggatcactgtttaagcatcccaaatttagtaatta |
4762374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 313
Target Start/End: Original strand, 16717605 - 16717678
Alignment:
Q |
240 |
actctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgatta |
313 |
Q |
|
|
||||||||||||||| ||||| |||||||| ||||| |||||| ||| ||||||||| |||||||||| |
|
|
T |
16717605 |
actctttaagcattctaaaataagtaattattctttaaaaaaattaaatattttgatttccaaagcattgatta |
16717678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0148 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 33285 - 33335
Alignment:
Q |
32 |
ccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||||| ||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
T |
33285 |
ccgaaaatgtcaaaagtaaatggtataaaaacatgttgattgtcagaacac |
33335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 19)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 31847107 - 31847171
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaaca |
81 |
Q |
|
|
|||||||||| |||||| ||||||||||||| | |||||| ||||||||||||| ||||| |||| |
|
|
T |
31847107 |
tctgatgctaggaagccaaaagtgtcaaaagcaaatggtaaaaaaacatgttgactgtcagaaca |
31847171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 55933548 - 55933492
Alignment:
Q |
18 |
ctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgt |
74 |
Q |
|
|
||||||||| |||| ||||||||||||||| | ||||||||||| |||||||||||| |
|
|
T |
55933548 |
ctgatgctaggaagtcgaaagtgtcaaaagcaaatggtataaaagcatgttgattgt |
55933492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 3330016 - 3330075
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtca |
76 |
Q |
|
|
|||||||||| |||||| ||||||||||||| | || |||||||| |||||||||||||| |
|
|
T |
3330016 |
tctgatgctaggaagccaaaagtgtcaaaagcaaatagtataaaagcatgttgattgtca |
3330075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 46440976 - 46440910
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacaca |
83 |
Q |
|
|
|||||||||| |||||||||||||||||||| | ||| ||||||||| |||| ||||| | |||||| |
|
|
T |
46440976 |
tctgatgctaggaagccgaaagtgtcaaaagcaaatgatataaaaacgtgttaattgttagaacaca |
46440910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 12918459 - 12918394
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||||||||| |||| ||||||||||||||||| || |||||||| |||||||||||| ||||| |
|
|
T |
12918459 |
tctgatgctaggaagtcgaaagtgtcaaaagtaaatagtataaaagtgtgttgattgtcagaacac |
12918394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 33982458 - 33982503
Alignment:
Q |
277 |
aaaaagttaaatgtttcgatttccaatgcattgattacatatattt |
322 |
Q |
|
|
|||||||||||| ||||||||||| || |||||||||||||||||| |
|
|
T |
33982458 |
aaaaagttaaatatttcgatttccgatacattgattacatatattt |
33982503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 53619606 - 53619671
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||||||||| |||| | |||||||||||| | ||||||||||| |||||||||||||| ||||| |
|
|
T |
53619606 |
tctgatgctaggaagtcaaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcagaacac |
53619671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 8297840 - 8297896
Alignment:
Q |
214 |
ggtcttgttaacgagtacccccgggt-actctttaagcattccaaaattagtaatta |
269 |
Q |
|
|
|||||||||||||||| |||||||| ||||||||||||| ||||| |||||||||| |
|
|
T |
8297840 |
ggtcttgttaacgagtgcccccggggcactctttaagcatcccaaatttagtaatta |
8297896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 48656991 - 48656931
Alignment:
Q |
23 |
gctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacaca |
83 |
Q |
|
|
||||||||| |||||||||||||| | ||||||||||||||| ||||||| || |||||| |
|
|
T |
48656991 |
gctaagaagtcgaaagtgtcaaaaacaaatggtataaaaacattttgattgacataacaca |
48656931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 315
Target Start/End: Complemental strand, 53737930 - 53737829
Alignment:
Q |
215 |
gtcttgttaacgagtaccccc-gggtactctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgatta |
313 |
Q |
|
|
|||||| |||||||| ||||| ||| ||||||||||| ||||||||| || ||||| ||||| | |||| ||||||||||||||||||||| || |
|
|
T |
53737930 |
gtcttgctaacgagtgcccccagggcactctttaagcgttccaaaataagaaattattctttaaaaaattcaaatatttcgatttccaatgcattgaata |
53737831 |
T |
|
Q |
314 |
ca |
315 |
Q |
|
|
|| |
|
|
T |
53737830 |
ca |
53737829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 50483283 - 50483224
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtca |
76 |
Q |
|
|
|||| ||||| ||| ||||||||||| |||| | ||||||||||| |||||||||||||| |
|
|
T |
50483283 |
tctggtgctaggaaaccgaaagtgtcgaaagcaaatggtataaaatcatgttgattgtca |
50483224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 7536658 - 7536593
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||| ||||| ||| | |||| |||||||| | || ||||||||||||||||||||||||||||| |
|
|
T |
7536658 |
tctggtgctaggaaactgaaattgtcaaaaacaaattgtataaaaacatgttgattgtcaaaacac |
7536593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 30940809 - 30940761
Alignment:
Q |
33 |
cgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
||||||||||||||| | ||||||||||| |||||||||||||| ||||| |
|
|
T |
30940809 |
cgaaagtgtcaaaagca-atggtataaaagcatgttgattgtcagaacac |
30940761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 44670903 - 44670858
Alignment:
Q |
277 |
aaaaagttaaatgtttcgatttccaatgcattgattacatatattt |
322 |
Q |
|
|
||||| |||||| ||||||||||||||||| | ||||||||||||| |
|
|
T |
44670903 |
aaaaaattaaatatttcgatttccaatgcaataattacatatattt |
44670858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 49446666 - 49446621
Alignment:
Q |
277 |
aaaaagttaaatgtttcgatttccaatgcattgattacatatattt |
322 |
Q |
|
|
||||||| |||| ||||||||||| |||||||||||||| |||||| |
|
|
T |
49446666 |
aaaaagtcaaatatttcgatttccgatgcattgattacacatattt |
49446621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 56462193 - 56462128
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||| ||||| ||| || |||||||| ||| | |||||||||||||||||||||||||| ||||| |
|
|
T |
56462193 |
tctggtgctaggaaaccaaaagtgtctaaaacaaatggtataaaaacatgttgattgtcagaacac |
56462128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 313
Target Start/End: Complemental strand, 23230308 - 23230272
Alignment:
Q |
277 |
aaaaagttaaatgtttcgatttccaatgcattgatta |
313 |
Q |
|
|
||||||||||||||||| |||| |||||||||||||| |
|
|
T |
23230308 |
aaaaagttaaatgtttcaattttcaatgcattgatta |
23230272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 322
Target Start/End: Complemental strand, 32055400 - 32055368
Alignment:
Q |
290 |
tttcgatttccaatgcattgattacatatattt |
322 |
Q |
|
|
||||||||||||||||||||||||||| ||||| |
|
|
T |
32055400 |
tttcgatttccaatgcattgattacatgtattt |
32055368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 317
Target Start/End: Original strand, 54543611 - 54543643
Alignment:
Q |
285 |
aaatgtttcgatttccaatgcattgattacata |
317 |
Q |
|
|
||||||||| ||||||||||||||||||||||| |
|
|
T |
54543611 |
aaatgtttcaatttccaatgcattgattacata |
54543643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 103126 - 103185
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtca |
76 |
Q |
|
|
|||| ||||| ||| |||||||||||||||| | ||||||||||| |||||||||||||| |
|
|
T |
103126 |
tctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtca |
103185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 49439 - 49496
Alignment:
Q |
25 |
taagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
||||||| ||||||||||||||| | ||||||||||| || ||||||||||| ||||| |
|
|
T |
49439 |
taagaagtcgaaagtgtcaaaagcaaatggtataaaagcacgttgattgtcagaacac |
49496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0490 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0490
Description:
Target: scaffold0490; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 6354 - 6419
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac |
82 |
Q |
|
|
|||| ||||| ||| | |||||||||||||| | |||||||| || |||||||||||||| ||||| |
|
|
T |
6354 |
tctggtgctaggaaactgaaagtgtcaaaagcaaatggtatagaagcatgttgattgtcagaacac |
6419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 10380 - 10436
Alignment:
Q |
17 |
tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattg |
73 |
Q |
|
|
|||| ||||| |||||| |||||||||||| | ||||||||||| ||||||||||| |
|
|
T |
10380 |
tctggtgctaggaagccacaagtgtcaaaagcaaatggtataaaagcatgttgattg |
10436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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