View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_low_51 (Length: 305)
Name: NF1711_low_51
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_low_51 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 21 - 287
Target Start/End: Complemental strand, 4776202 - 4775936
Alignment:
| Q |
21 |
acactacctttcaatcactcgcccagacatagcatttccagtgaataaactagcataacaaatgcaagctcctactgtgacagatatgcaagccttaaat |
120 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4776202 |
acactacctttcaatcactcgcccagacattgcatttccagtgaataaactagcataacaaatgcaagctcctactgtgacagatatgcaagccttgaag |
4776103 |
T |
|
| Q |
121 |
agagtattgcgctatctcaaatccaccatctccaatggactccatctcacaagatcttcaaatacaagcctcacaagcttttgtgatgcagattgggctg |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| | |
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| T |
4776102 |
agagtattgcgctatctcaaatccaccatctccaatggactccatctcacaagatcttcaaatacaaacctcacaagcttttgtgatgcagattaggcag |
4776003 |
T |
|
| Q |
221 |
gagacacaattgatcggaaatcgacaggtgcttatttaatttattttggccctaatattatctcttg |
287 |
Q |
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||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4776002 |
gagacacaattgacaggaaatcaacaggtgcttatttaatttattttggccctaatattatctcttg |
4775936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 184 - 287
Target Start/End: Complemental strand, 43061400 - 43061297
Alignment:
| Q |
184 |
acaagcctcacaagcttttgtgatgcagattgggctggagacacaattgatcggaaatcgacaggtgcttatttaatttattttggccctaatattatct |
283 |
Q |
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||||||||||||| ||||||||||||||||||||| |||||||||||||| ||| || |||||||||||||| ||||||||||||||||||||||||| |
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| T |
43061400 |
acaagcctcacaaacttttgtgatgcagattgggcaggagacacaattgacaggatatgaacaggtgcttatttcatttattttggccctaatattatct |
43061301 |
T |
|
| Q |
284 |
cttg |
287 |
Q |
| |
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|||| |
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| T |
43061300 |
cttg |
43061297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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