View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_low_52 (Length: 303)
Name: NF1711_low_52
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 195 - 287
Target Start/End: Complemental strand, 19835875 - 19835776
Alignment:
| Q |
195 |
aacaggacttgatacttgatagctagaatatattgaaggactggtagactactactaagtatcaag-------tatcaaggattgctgcaacagaatctc |
287 |
Q |
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| T |
19835875 |
aacaggacttgatacttgatagctagaatatattgaaggactggtagactactactaagtatcaagcatcaaatatcaaggattgctgcaacagaatctc |
19835776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 103 - 198
Target Start/End: Complemental strand, 15295425 - 15295330
Alignment:
| Q |
103 |
aacattcagattgttacataccagaactaatcaacagaacaaacatttctatgctattatacaagaacaatgtaaaaacaaaagatgcacaaaaca |
198 |
Q |
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| T |
15295425 |
aacattaagattgttacataccagaactaatcaacagaacagacatttctatgccattaaacaagaacaatgcaaaaacaaaaaaagcacaaaaca |
15295330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 283
Target Start/End: Complemental strand, 19958097 - 19958040
Alignment:
| Q |
224 |
atattgaaggactggtagactactactaagtatcaagtatcaaggattgctgcaacagaa |
283 |
Q |
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| T |
19958097 |
atattggaggattgatagactgctactaagtatca--tatcaaggatttctgcaacagaa |
19958040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 283
Target Start/End: Original strand, 20034663 - 20034720
Alignment:
| Q |
224 |
atattgaaggactggtagactactactaagtatcaagtatcaaggattgctgcaacagaa |
283 |
Q |
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| T |
20034663 |
atattggaggattgatagactgctactaagtatca--tatcaaggatttctgcaacagaa |
20034720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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