View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1711_low_54 (Length: 298)

Name: NF1711_low_54
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1711_low_54
NF1711_low_54
[»] chr7 (8 HSPs)
chr7 (99-244)||(1813605-1813750)
chr7 (243-298)||(41832573-41832628)
chr7 (244-298)||(41830168-41830222)
chr7 (244-298)||(8083505-8083559)
chr7 (105-185)||(5447775-5447855)
chr7 (105-185)||(5438765-5438845)
chr7 (107-182)||(5439762-5439837)
chr7 (107-182)||(5448772-5448847)
[»] chr2 (4 HSPs)
chr2 (242-298)||(31180184-31180240)
chr2 (243-298)||(24039425-24039480)
chr2 (244-298)||(24038231-24038285)
chr2 (243-298)||(31269579-31269633)
[»] chr8 (4 HSPs)
chr8 (243-298)||(7275260-7275315)
chr8 (244-298)||(7277865-7277919)
chr8 (245-298)||(13856639-13856692)
chr8 (266-298)||(3567607-3567639)
[»] chr4 (3 HSPs)
chr4 (243-298)||(2546987-2547042)
chr4 (107-184)||(14508861-14508938)
chr4 (192-244)||(31327013-31327065)
[»] scaffold0023 (1 HSPs)
scaffold0023 (244-298)||(111660-111714)
[»] chr6 (3 HSPs)
chr6 (244-298)||(30689750-30689804)
chr6 (260-297)||(31792317-31792354)
chr6 (192-244)||(20726575-20726627)
[»] chr5 (6 HSPs)
chr5 (244-298)||(21254116-21254170)
chr5 (243-298)||(21256587-21256642)
chr5 (244-298)||(26873277-26873331)
chr5 (244-298)||(31339255-31339309)
chr5 (107-182)||(30921529-30921604)
chr5 (192-244)||(41340832-41340884)
[»] chr1 (5 HSPs)
chr1 (244-298)||(18705824-18705878)
chr1 (105-185)||(52022261-52022341)
chr1 (244-297)||(12436186-12436239)
chr1 (121-181)||(43635671-43635731)
chr1 (121-185)||(43835192-43835256)
[»] scaffold0862 (1 HSPs)
scaffold0862 (243-298)||(189-244)
[»] scaffold0525 (1 HSPs)
scaffold0525 (243-298)||(2144-2199)
[»] scaffold0251 (1 HSPs)
scaffold0251 (244-298)||(4583-4637)
[»] chr3 (7 HSPs)
chr3 (244-298)||(10018894-10018948)
chr3 (244-298)||(10256208-10256262)
chr3 (252-298)||(8504319-8504365)
chr3 (244-298)||(10180091-10180145)
chr3 (107-183)||(17730976-17731052)
chr3 (107-183)||(19032207-19032283)
chr3 (105-183)||(21344606-21344684)
[»] scaffold0655 (1 HSPs)
scaffold0655 (243-298)||(611-666)


Alignment Details
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 99 - 244
Target Start/End: Original strand, 1813605 - 1813750
Alignment:
Q  99 cacgttcattgtctaaaccgacaactagatcattattagtatgtgaaattgtttactacatactgacttctctcactctcaccccaacacaatctccacc 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1813605 cacgttcattgtctaaaccgacaactagatcattattagtatgtgaaattgtttactacatactgacttctctcactctcaccccaacacaatctccacc 1813704  T
Q  199 ataaacagtattcttcaattgaaattgaaccattcttagaatttct 244  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  1813705 ataaacagtattcttcacttgaaattgaaccattcttagaatttct 1813750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 243 - 298
Target Start/End: Original strand, 41832573 - 41832628
Alignment:
Q  243 ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataa 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41832573 ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataa 41832628  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 244 - 298
Target Start/End: Original strand, 41830168 - 41830222
Alignment:
Q  244 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41830168 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa 41830222  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 8083559 - 8083505
Alignment:
Q  244 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa 298  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8083559 tattaaagatatagattagtagcatattagtcctagtaaagagtagtataaataa 8083505  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 105 - 185
Target Start/End: Original strand, 5447775 - 5447855
Alignment:
Q  105 cattgtctaaaccgacaactagatcattattagtatgtgaaattgtttactacatactgacttctctcactctcaccccaa 185  Q
    ||||||||||||||||||| |||  ||||| | |||||||| || ||||| ||| |  |||||||||||||||||||||||    
T  5447775 cattgtctaaaccgacaaccagagaattatcactatgtgaatttttttacaacacatagacttctctcactctcaccccaa 5447855  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 185
Target Start/End: Original strand, 5438765 - 5438845
Alignment:
Q  105 cattgtctaaaccgacaactagatcattattagtatgtgaaattgtttactacatactgacttctctcactctcaccccaa 185  Q
    ||||||||||||||||||| |||  ||||| | ||| |||| || ||||| ||| |  |||||||||||||||||||||||    
T  5438765 cattgtctaaaccgacaaccagagaattatcactatctgaatttttttacaacacatagacttctctcactctcaccccaa 5438845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 182
Target Start/End: Original strand, 5439762 - 5439837
Alignment:
Q  107 ttgtctaaaccgacaactagatcattattagtatgtgaaattgtttactacatactgacttctctcactctcaccc 182  Q
    ||||||||||||||||| |||  ||||| | ||||||||||| ||||| ||| |  ||||||| ||||||||||||    
T  5439762 ttgtctaaaccgacaaccagagaattatcactatgtgaaattttttacaacacatagacttctatcactctcaccc 5439837  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 182
Target Start/End: Original strand, 5448772 - 5448847
Alignment:
Q  107 ttgtctaaaccgacaactagatcattattagtatgtgaaattgtttactacatactgacttctctcactctcaccc 182  Q
    ||||||||||||||||| |||  ||||| | ||||||||||| ||||| ||| |  ||||||| ||||||||||||    
T  5448772 ttgtctaaaccgacaaccagagaattatcactatgtgaaattttttacaacacatagacttctatcactctcaccc 5448847  T

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Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 31180184 - 31180240
Alignment:
Q  242 tctattagagatatagattagtagcatattagtcctagtagagagtagtataaataa 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31180184 tctattagagatatagattagtagcatattagtcctagtagagagtagtataaataa 31180240  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 243 - 298
Target Start/End: Original strand, 24039425 - 24039480
Alignment:
Q  243 ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataa 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24039425 ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataa 24039480  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 244 - 298
Target Start/End: Original strand, 24038231 - 24038285
Alignment:
Q  244 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24038231 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa 24038285  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 298
Target Start/End: Complemental strand, 31269633 - 31269579
Alignment:
Q  243 ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataa 298  Q
    |||||||| |||||||| |||||||||||||||||||||||||||| |||||||||    
T  31269633 ctattagatatatagat-agtagcatattagtcctagtagagagtaatataaataa 31269579  T

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Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 243 - 298
Target Start/End: Complemental strand, 7275315 - 7275260
Alignment:
Q  243 ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataa 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7275315 ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataa 7275260  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 7277919 - 7277865
Alignment:
Q  244 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa 298  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7277919 tattagagatatagattattagcatattagtcctagtagagagtagtataaataa 7277865  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 13856639 - 13856692
Alignment:
Q  245 attagagatatagattagtagcatattagtcctagtagagagtagtataaataa 298  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13856639 attagagatatagattagtggcatattagtcctagtagagagtagtataaataa 13856692  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 298
Target Start/End: Complemental strand, 3567639 - 3567607
Alignment:
Q  266 catattagtcctagtagagagtagtataaataa 298  Q
    |||||||||||||| ||||||||||||||||||    
T  3567639 catattagtcctagcagagagtagtataaataa 3567607  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 243 - 298
Target Start/End: Original strand, 2546987 - 2547042
Alignment:
Q  243 ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataa 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2546987 ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataa 2547042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 14508938 - 14508861
Alignment:
Q  107 ttgtctaaaccgacaactagatcattattagtatgtgaaattgtttactacatactgacttctctcactctcacccca 184  Q
    ||||||||||||||||| | |  ||||||| |||||||| || ||||| ||| |  ||||||||||||||||||||||    
T  14508938 ttgtctaaaccgacaaccaaagaattattactatgtgaatttttttacaacacatagacttctctcactctcacccca 14508861  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 31327065 - 31327013
Alignment:
Q  192 ctccaccataaacagtattcttcaattgaaattgaaccattcttagaatttct 244  Q
    |||||||||||| ||||| ||| | |||||| ||||||||||| |||||||||    
T  31327065 ctccaccataaagagtatacttaacttgaaactgaaccattctaagaatttct 31327013  T

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Target: scaffold0023 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 111714 - 111660
Alignment:
Q  244 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  111714 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa 111660  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 30689804 - 30689750
Alignment:
Q  244 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30689804 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa 30689750  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 297
Target Start/End: Original strand, 31792317 - 31792354
Alignment:
Q  260 tagtagcatattagtcctagtagagagtagtataaata 297  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  31792317 tagtagcgtattagtcctagtagatagtagtataaata 31792354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 20726627 - 20726575
Alignment:
Q  192 ctccaccataaacagtattcttcaattgaaattgaaccattcttagaatttct 244  Q
    |||||| ||||| ||||| |||||  ||||||||||||||||| |||||||||    
T  20726627 ctccacaataaagagtatacttcacatgaaattgaaccattctaagaatttct 20726575  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 244 - 298
Target Start/End: Original strand, 21254116 - 21254170
Alignment:
Q  244 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21254116 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa 21254170  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 243 - 298
Target Start/End: Original strand, 21256587 - 21256642
Alignment:
Q  243 ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataa 298  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  21256587 ctattagagatatagattagtagcatattagtcatagtagagagtagtataaataa 21256642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 26873331 - 26873277
Alignment:
Q  244 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26873331 tattagagatatagattagtagcatattagtcctagtagagagtagtaaaaataa 26873277  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 31339309 - 31339255
Alignment:
Q  244 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa 298  Q
    |||||||||||| || || ||  ||||||||||||||||||||||||||||||||    
T  31339309 tattagagatattgaataatattatattagtcctagtagagagtagtataaataa 31339255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 182
Target Start/End: Original strand, 30921529 - 30921604
Alignment:
Q  107 ttgtctaaaccgacaactagatcattattagtatgtgaaattgtttactacatactgacttctctcactctcaccc 182  Q
    |||| |||||||||||| |||  ||||||| ||||||||||| ||| | ||| |  ||||||||||||||||||||    
T  30921529 ttgtttaaaccgacaacaagagaattattactatgtgaaattttttccaacacatagacttctctcactctcaccc 30921604  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 41340884 - 41340832
Alignment:
Q  192 ctccaccataaacagtattcttcaattgaaattgaaccattcttagaatttct 244  Q
    |||||||||||| ||||| ||||| |||||| ||||||||||  |||||||||    
T  41340884 ctccaccataaagagtatacttcatttgaaactgaaccattccaagaatttct 41340832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 18705878 - 18705824
Alignment:
Q  244 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18705878 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa 18705824  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 105 - 185
Target Start/End: Complemental strand, 52022341 - 52022261
Alignment:
Q  105 cattgtctaaaccgacaactagatcattattagtatgtgaaattgtttactacatactgacttctctcactctcaccccaa 185  Q
    ||||||||||||||||||| |||  ||||||| ||||||||||  ||||| ||| |  ||||||||||||||||| |||||    
T  52022341 cattgtctaaaccgacaaccagaaaattattattatgtgaaatcttttacaacacatagacttctctcactctcatcccaa 52022261  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 12436186 - 12436239
Alignment:
Q  244 tattagagatatagattagtagcatattagtcctagtagagagtagtataaata 297  Q
    |||| ||||||||||||||| |||||||||| |||||| | |||||||||||||    
T  12436186 tattggagatatagattagtggcatattagttctagtaaatagtagtataaata 12436239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 43635671 - 43635731
Alignment:
Q  121 aactagatcattattagtatgtgaaattgtttactacatactgacttctctcactctcacc 181  Q
    |||||||  ||||||| ||||||||||| ||||| || ||  |||||||||||||||||||    
T  43635671 aactagagaattattactatgtgaaattttttacaacgtatagacttctctcactctcacc 43635731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 43835256 - 43835192
Alignment:
Q  121 aactagatcattattagtatgtgaaattgtttactacatactgacttctctcactctcaccccaa 185  Q
    |||||||  ||||||| |||||||  || ||||| ||| || |||||||||||||||||||||||    
T  43835256 aactagagaattattactatgtgattttttttacaacacacagacttctctcactctcaccccaa 43835192  T

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Target: scaffold0862 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0862
Description:

Target: scaffold0862; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 243 - 298
Target Start/End: Original strand, 189 - 244
Alignment:
Q  243 ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataa 298  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  189 ctattagagatatagattagtagcatattagtcctagtagagaatagtataaataa 244  T

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Target: scaffold0525 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 243 - 298
Target Start/End: Complemental strand, 2199 - 2144
Alignment:
Q  243 ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataa 298  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2199 ctattagagatatagattaatagcatattagtcctagtagagagtagtataaataa 2144  T

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Target: scaffold0251 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 244 - 298
Target Start/End: Original strand, 4583 - 4637
Alignment:
Q  244 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa 298  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4583 tattagatatatagattagtagcatattagtcctagtagagagtagtataaataa 4637  T

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Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 10018948 - 10018894
Alignment:
Q  244 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa 298  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  10018948 tattagagatatagattagtggcatattagttctagtagagagtagtataaataa 10018894  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 10256262 - 10256208
Alignment:
Q  244 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa 298  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  10256262 tattagagatatagattagtggcatattagttctagtagagagtagtataaataa 10256208  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 252 - 298
Target Start/End: Complemental strand, 8504365 - 8504319
Alignment:
Q  252 atatagattagtagcatattagtcctagtagagagtagtataaataa 298  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||    
T  8504365 atatagattagtggcatattagtcctagtaaagagtagtataaataa 8504319  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 10180145 - 10180091
Alignment:
Q  244 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa 298  Q
    |||||||||||||||||||| ||||||||||  |||||||||||| |||||||||    
T  10180145 tattagagatatagattagtggcatattagttgtagtagagagtaatataaataa 10180091  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 17730976 - 17731052
Alignment:
Q  107 ttgtctaaaccgacaactagatcattattagtatgtgaaattgtttactacatactgacttctctcactctcacccc 183  Q
    ||||||||||||||||| |||  ||||||| ||||||||||| ||||  ||| |  |||||||||||||||||||||    
T  17730976 ttgtctaaaccgacaaccagagaattattactatgtgaaattttttagaacacatagacttctctcactctcacccc 17731052  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 19032207 - 19032283
Alignment:
Q  107 ttgtctaaaccgacaactagatcattattagtatgtgaaattgtttactacatactgacttctctcactctcacccc 183  Q
    ||||||||||||||||| |||  ||||||| ||||||||||| ||||  ||| |  |||||||||||||||||||||    
T  19032207 ttgtctaaaccgacaaccagagaattattactatgtgaaattttttagaacacatagacttctctcactctcacccc 19032283  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 183
Target Start/End: Original strand, 21344606 - 21344684
Alignment:
Q  105 cattgtctaaaccgacaactagatcattattagtatgtgaaattgtttactacatactgacttctctcactctcacccc 183  Q
    ||||||||||||| ||||| |||| ||||||||||||||||||  ||||| ||| |   ||||||||| ||||||||||    
T  21344606 cattgtctaaaccaacaaccagataattattagtatgtgaaatcttttacaacacataaacttctctctctctcacccc 21344684  T

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Target: scaffold0655 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 243 - 298
Target Start/End: Original strand, 611 - 666
Alignment:
Q  243 ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataa 298  Q
    |||||||||||||||||||||  ||||||| |||||||||||||||||||||||||    
T  611 ctattagagatatagattagtgccatattaatcctagtagagagtagtataaataa 666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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