View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_low_55 (Length: 297)
Name: NF1711_low_55
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1711_low_55 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 83 - 282
Target Start/End: Complemental strand, 26377398 - 26377199
Alignment:
Q |
83 |
ggaatgaagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagccagcacacgatccttcctactattagaaacccaaaacaa |
182 |
Q |
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T |
26377398 |
ggaatgaagtcgaagcacggtggaggtgccgtggcacgtagaatcgtaagatcctacgagccagcactcgatccttcctactattagaaacccaaaacaa |
26377299 |
T |
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Q |
183 |
atctttttactctagtctaagaattgcattnnnnnnnnctactatagcccatgtgtcgtctgagacgtgtacaattgacaaccaatcattttgttcttgt |
282 |
Q |
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T |
26377298 |
atctttttactctagtctaagaattgcattaaaaaaaactactatagcccatgtgtcgtcagagacgtgtacagttgacaaccaatcattttgttcttgt |
26377199 |
T |
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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 50064000 - 50063925
Alignment:
Q |
82 |
cggaatgaagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagccagcacacgatcct |
157 |
Q |
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T |
50064000 |
cggagtgaagtcgaagctcggttgaggtgccgtggcacgtagaatcgtaagatcctacgagccagcactcgatcct |
50063925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 7227212 - 7227152
Alignment:
Q |
89 |
aagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagccagcac |
149 |
Q |
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T |
7227212 |
aagtcgaagcatggtcgaggtgctgtgggacgtagaatcgtacaatcctaagagccagcac |
7227152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 33966720 - 33966650
Alignment:
Q |
87 |
tgaagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagccagcacacgatcct |
157 |
Q |
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T |
33966720 |
tgaagtcaaagcacggttgaggtgccgtggcacgtagaatcgtaagatcctacgagccagcactcgatcct |
33966650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 157
Target Start/End: Complemental strand, 50204599 - 50204531
Alignment:
Q |
89 |
aagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagccagcacacgatcct |
157 |
Q |
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T |
50204599 |
aagtcgaagcacgattgaggtgctgtggaacgtaggatcatacgatcctacgaaccagcactcgatcct |
50204531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 25101044 - 25101119
Alignment:
Q |
82 |
cggaatgaagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagccagcacacgatcct |
157 |
Q |
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T |
25101044 |
cggagtgaagtcgaagcacggttgaggtgccgtgggacatagaatcgtaagatcctacgagccagcactcgatcct |
25101119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 157
Target Start/End: Original strand, 23890001 - 23890038
Alignment:
Q |
120 |
gtagaatcgtaagatcctacgagccagcacacgatcct |
157 |
Q |
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T |
23890001 |
gtagaatcgtacgatcctacgagccagcactcgatcct |
23890038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 43281148 - 43281208
Alignment:
Q |
89 |
aagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagccagcac |
149 |
Q |
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T |
43281148 |
aagtcgaagcatgattgaggtgccgtgggatgtagaatcgtacgatcctatgaaccagcac |
43281208 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 155
Target Start/End: Complemental strand, 55911260 - 55911195
Alignment:
Q |
89 |
aagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagccagcacacgatc |
155 |
Q |
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T |
55911260 |
aagtcaaagcacgattgaggtgccgtgg-atgtaggatcgtatgatcctacgaaccagcactcgatc |
55911195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 29168556 - 29168612
Alignment:
Q |
87 |
tgaagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagc |
143 |
Q |
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T |
29168556 |
tgaagtcgaagcacggtcgaggtgctgtggcacgtaagatcgtgtgatcctacgagc |
29168612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 46082492 - 46082552
Alignment:
Q |
89 |
aagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagccagcac |
149 |
Q |
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T |
46082492 |
aagtcgaagcacggttgaggtgcggagggacatagaatcgtacgatcctatgagccagcac |
46082552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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