View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1711_low_56 (Length: 294)

Name: NF1711_low_56
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1711_low_56
NF1711_low_56
[»] scaffold0063 (1 HSPs)
scaffold0063 (21-288)||(35383-35652)
[»] scaffold0263 (1 HSPs)
scaffold0263 (21-129)||(21257-21366)
[»] scaffold0351 (1 HSPs)
scaffold0351 (21-144)||(10781-10902)
[»] scaffold0002 (2 HSPs)
scaffold0002 (21-144)||(110686-110807)
scaffold0002 (213-288)||(94965-95040)
[»] chr8 (2 HSPs)
chr8 (42-93)||(6278650-6278701)
chr8 (224-288)||(8794339-8794403)
[»] scaffold0070 (1 HSPs)
scaffold0070 (210-265)||(42537-42592)
[»] chr5 (3 HSPs)
chr5 (213-288)||(7918463-7918538)
chr5 (223-288)||(34984823-34984888)
chr5 (213-288)||(29075788-29075863)
[»] chr1 (6 HSPs)
chr1 (213-288)||(33700767-33700842)
chr1 (222-288)||(8177176-8177242)
chr1 (222-288)||(52336768-52336834)
chr1 (223-288)||(51703796-51703861)
chr1 (213-288)||(4566555-4566630)
chr1 (213-288)||(36371477-36371552)
[»] scaffold0180 (1 HSPs)
scaffold0180 (222-288)||(19956-20022)
[»] chr2 (1 HSPs)
chr2 (224-288)||(4226080-4226144)
[»] chr3 (4 HSPs)
chr3 (213-288)||(16354886-16354961)
chr3 (213-288)||(31788964-31789039)
chr3 (224-288)||(4222159-4222223)
chr3 (224-288)||(46518646-46518710)
[»] chr7 (2 HSPs)
chr7 (225-287)||(5830598-5830660)
chr7 (213-281)||(35119390-35119458)
[»] chr4 (1 HSPs)
chr4 (224-288)||(16581711-16581775)


Alignment Details
Target: scaffold0063 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 21 - 288
Target Start/End: Complemental strand, 35652 - 35383
Alignment:
Q  21 accacttcataagctagtagcttcgtgtgatggtgacaatactctttacacacatgagttttggaaaagatgaaagagaatgctgtattctgttgtcgtg 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35652 accacttcataagctagtagcttcgtgtgatggtgacaatactctttacacacatgagttttggaaaagatgaaagagaatgctgtattctgttgtcgtg 35553  T
Q  121 tgagtgcagtagatagggtttaaacttgttaagaattctacattccgtgnnnnnnnggttctacattatat-agtgagaataattttaa-gcagttgggt 218  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||       ||||||||||||||| |||||||||||||||||  || || |||    
T  35552 tgagtgcagtagatagggtttaaacttgttaagagttctacattccgtgaaaaaaaggttctacattatataagtgagaataattttaacccacttcggt 35453  T
Q  219 tttcctagtggtattggcttggaatctaggagtatactcctcctcaggattttaggttcgattatctctg 288  Q
    || || ||||||||||||||||||||||||||||| |||||||||| | | ||| |||||||||||||||    
T  35452 ttgcccagtggtattggcttggaatctaggagtatgctcctcctcaaggtcttaagttcgattatctctg 35383  T

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Target: scaffold0263 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 21366 - 21257
Alignment:
Q  21 accacttcataagctagtagcttcgtgtgatggtgacaatactctttacacac-atgagttttggaaaagatgaaagagaatgctgtattctgttgtcgt 119  Q
    ||||| ||||||||||||| ||||||||||| |||||||||||||||||||||  |||||||||| |||||||| | |||| | |||| |||||||||||    
T  21366 accacgtcataagctagtaacttcgtgtgattgtgacaatactctttacacactttgagttttgggaaagatgagaaagaaggttgtaatctgttgtcgt 21267  T
Q  120 gtgagtgcag 129  Q
    ||||||||||    
T  21266 gtgagtgcag 21257  T

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Target: scaffold0351 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 144
Target Start/End: Original strand, 10781 - 10902
Alignment:
Q  21 accacttcataagctagtagcttcgtgtgatggtgacaatactctttacacacatgagttttggaaaagatgaaagagaa---tgctgtattctgttgtc 117  Q
    ||||| ||||||||||||||||||||||||| |||||| ||||||||||||||   |||||||| ||| |||| ||||||   ||  ||| ||||||||     
T  10781 accacgtcataagctagtagcttcgtgtgatagtgacagtactctttacacac--cagttttgggaaaaatgagagagaaggttgtagtaatctgttgtt 10878  T
Q  118 gtgtgagtgcagtagatagggtttaaa 144  Q
    ||||||||||   ||||||||||||||    
T  10879 gtgtgagtgc---agatagggtttaaa 10902  T

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Target: scaffold0002 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 144
Target Start/End: Complemental strand, 110807 - 110686
Alignment:
Q  21 accacttcataagctagtagcttcgtgtgatggtgacaatactctttacacacatgagttttggaaaagatgaaagagaa---tgctgtattctgttgtc 117  Q
    ||||| ||||||||||||||||||||||||| |||||| ||||||||||||||   |||||||| ||| |||| ||||||   ||  ||| ||||||||     
T  110807 accacgtcataagctagtagcttcgtgtgatagtgacagtactctttacacac--cagttttgggaaaaatgagagagaaggttgtagtaatctgttgtt 110710  T
Q  118 gtgtgagtgcagtagatagggtttaaa 144  Q
    ||||||||||   ||||||||||||||    
T  110709 gtgtgagtgc---agatagggtttaaa 110686  T

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Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 288
Target Start/End: Complemental strand, 95040 - 94965
Alignment:
Q  213 ttgggttttcctagtggtattggcttggaatctaggagtatactcctcctcaggattttaggttcgattatctctg 288  Q
    |||||||  ||||||||||||||||||||| || ||||| | |||||||||| | | | |||||| ||||||||||    
T  95040 ttgggttggcctagtggtattggcttggaacctgggagtgtgctcctcctcaaggtctcaggttcaattatctctg 94965  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 6278701 - 6278650
Alignment:
Q  42 ttcgtgtgatggtgacaatactctttacacacatgagttttggaaaagatga 93  Q
    |||||||||| |||||||||||||||||||||||||| ||||| ||||||||    
T  6278701 ttcgtgtgatagtgacaatactctttacacacatgaggtttgggaaagatga 6278650  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 288
Target Start/End: Complemental strand, 8794403 - 8794339
Alignment:
Q  224 tagtggtattggcttggaatctaggagtatactcctcctcaggattttaggttcgattatctctg 288  Q
    ||||||||||||||||||| || | ||| | |||||||||||| | | |||||||||| ||||||    
T  8794403 tagtggtattggcttggaacctggaagtgtgctcctcctcagggtctcaggttcgattctctctg 8794339  T

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Target: scaffold0070 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 265
Target Start/End: Complemental strand, 42592 - 42537
Alignment:
Q  210 cagttgggttttcctagtggtattggcttggaatctaggagtatactcctcctcag 265  Q
    ||||||||||  ||||||||||||| |||||||||| ||||||| |||||||||||    
T  42592 cagttgggttggcctagtggtattgacttggaatctgggagtatgctcctcctcag 42537  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 288
Target Start/End: Complemental strand, 7918538 - 7918463
Alignment:
Q  213 ttgggttttcctagtggtattggcttggaatctaggagtatactcctcctcaggattttaggttcgattatctctg 288  Q
    |||||||  ||||||||||||||||||||| || |||||  ||||||||||| | | |||||||||||| ||||||    
T  7918538 ttgggttggcctagtggtattggcttggaacctgggagtgcactcctcctcaaggtcttaggttcgattctctctg 7918463  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 34984823 - 34984888
Alignment:
Q  223 ctagtggtattggcttggaatctaggagtatactcctcctcaggattttaggttcgattatctctg 288  Q
    |||||||||||||||||||| || ||||| | |||||||||| | | |||||||||||| ||||||    
T  34984823 ctagtggtattggcttggaacctgggagtgtgctcctcctcaaggtcttaggttcgattctctctg 34984888  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 288
Target Start/End: Original strand, 29075788 - 29075863
Alignment:
Q  213 ttgggttttcctagtggtattggcttggaatctaggagtatactcctcctcaggattttaggttcgattatctctg 288  Q
    |||||||| ||||||||||||||||||| |||| ||||| | |||||||||  ||| | | |||||||| ||||||    
T  29075788 ttgggtttgcctagtggtattggcttgggatctgggagtgtgctcctcctcgagatctcatgttcgattctctctg 29075863  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 288
Target Start/End: Complemental strand, 33700842 - 33700767
Alignment:
Q  213 ttgggttttcctagtggtattggcttggaatctaggagtatactcctcctcaggattttaggttcgattatctctg 288  Q
    |||||||  |||||||||||||||||||||||| ||||| | |||||||||| | | | |||||||||| ||||||    
T  33700842 ttgggttggcctagtggtattggcttggaatctgggagtgtgctcctcctcaaggtctcaggttcgattctctctg 33700767  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 288
Target Start/End: Complemental strand, 8177242 - 8177176
Alignment:
Q  222 cctagtggtattggcttggaatctaggagtatactcctcctcaggattttaggttcgattatctctg 288  Q
    ||||||||||||||||||| |||| ||||| | |||||||||| | ||| |||||||||| ||||||    
T  8177242 cctagtggtattggcttgggatctgggagtgtgctcctcctcaaggtttcaggttcgattctctctg 8177176  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 288
Target Start/End: Complemental strand, 52336834 - 52336768
Alignment:
Q  222 cctagtggtattggcttggaatctaggagtatactcctcctcaggattttaggttcgattatctctg 288  Q
    ||||||||||||||||||| |||| ||||| | |||||||| | ||| | |||||||||||||||||    
T  52336834 cctagtggtattggcttgggatctgggagtgtgctcctccttaagatctcaggttcgattatctctg 52336768  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 51703796 - 51703861
Alignment:
Q  223 ctagtggtattggcttggaatctaggagtatactcctcctcaggattttaggttcgattatctctg 288  Q
    ||||||||||||||||||||||| ||||| | ||||||||||   ||| |||||||||| ||||||    
T  51703796 ctagtggtattggcttggaatctgggagtgtgctcctcctcaaagtttcaggttcgattctctctg 51703861  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 288
Target Start/End: Original strand, 4566555 - 4566630
Alignment:
Q  213 ttgggttttcctagtggtattggcttggaatctaggagtatactcctcctcaggattttaggttcgattatctctg 288  Q
    |||||||  ||||||| ||||||||||||| || ||||| | |||||||||||| | | |||||||||| ||||||    
T  4566555 ttgggttggcctagtgatattggcttggaacctgggagtgtgctcctcctcagggtctcaggttcgattctctctg 4566630  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 288
Target Start/End: Original strand, 36371477 - 36371552
Alignment:
Q  213 ttgggttttcctagtggtattggcttggaatctaggagtatactcctcctcaggattttaggttcgattatctctg 288  Q
    |||||||  ||||||||||||||||||||| || ||||| | |||||||||| | | | |||||||||| ||||||    
T  36371477 ttgggttggcctagtggtattggcttggaacctgggagtgtgctcctcctcaaggtctgaggttcgattctctctg 36371552  T

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Target: scaffold0180 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 288
Target Start/End: Complemental strand, 20022 - 19956
Alignment:
Q  222 cctagtggtattggcttggaatctaggagtatactcctcctcaggattttaggttcgattatctctg 288  Q
    ||||||||||||||||||||| || ||||||| |||||||||| | | | |||||||||| ||||||    
T  20022 cctagtggtattggcttggaacctgggagtatgctcctcctcaaggtctcaggttcgattctctctg 19956  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 4226080 - 4226144
Alignment:
Q  224 tagtggtattggcttggaatctaggagtatactcctcctcaggattttaggttcgattatctctg 288  Q
    ||||||||||| |||||||| |  || |||||||||||||| | ||| |||||||||||||||||    
T  4226080 tagtggtattgacttggaatttgagaatatactcctcctcaaggtttcaggttcgattatctctg 4226144  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 288
Target Start/End: Complemental strand, 16354961 - 16354886
Alignment:
Q  213 ttgggttttcctagtggtattggcttggaatctaggagtatactcctcctcaggattttaggttcgattatctctg 288  Q
    |||||||  ||||||||||||||||||||| ||  |||| | |||||||||||| | | |||||||||| ||||||    
T  16354961 ttgggttggcctagtggtattggcttggaacctgtgagtgtgctcctcctcagggtctcaggttcgattctctctg 16354886  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 288
Target Start/End: Complemental strand, 31789039 - 31788964
Alignment:
Q  213 ttgggttttcctagtggtattggcttggaatctaggagtatactcctcctcaggattttaggttcgattatctctg 288  Q
    |||||||  ||||||| ||||||||||| |||| ||||| | |||||||||  | ||||||||| |||||||||||    
T  31789039 ttgggttggcctagtgttattggcttgggatctgggagtgtgctcctcctcgaggttttaggtttgattatctctg 31788964  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 4222159 - 4222223
Alignment:
Q  224 tagtggtattggcttggaatctaggagtatactcctcctcaggattttaggttcgattatctctg 288  Q
    ||||||||||||||||| |||| ||||| | ||||||||||   | |||||||||||| ||||||    
T  4222159 tagtggtattggcttgggatctgggagtgtgctcctcctcaaagtcttaggttcgattctctctg 4222223  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 46518646 - 46518710
Alignment:
Q  224 tagtggtattggcttggaatctaggagtatactcctcctcaggattttaggttcgattatctctg 288  Q
    ||||||||||||||||| |||| ||||| | |||||||||| | ||| ||||| |||| ||||||    
T  46518646 tagtggtattggcttgggatctgggagtgtgctcctcctcaaggtttcaggtttgattctctctg 46518710  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 287
Target Start/End: Complemental strand, 5830660 - 5830598
Alignment:
Q  225 agtggtattggcttggaatctaggagtatactcctcctcaggattttaggttcgattatctct 287  Q
    |||| |||||| |||||| || ||||| |||||||||||| ||||| | ||||||||||||||    
T  5830660 agtgatattggtttggaacctgggagtgtactcctcctcaagatttcaagttcgattatctct 5830598  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 281
Target Start/End: Original strand, 35119390 - 35119458
Alignment:
Q  213 ttgggttttcctagtggtattggcttggaatctaggagtatactcctcctcaggattttaggttcgatt 281  Q
    |||||||  ||||||||||||| ||||| |||| || |||| ||| |||||| ||||| ||||||||||    
T  35119390 ttgggttggcctagtggtattgacttgggatctgggtgtatgctcatcctcaagatttcaggttcgatt 35119458  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 16581711 - 16581775
Alignment:
Q  224 tagtggtattggcttggaatctaggagtatactcctcctcaggattttaggttcgattatctctg 288  Q
    ||||||||||||||||||| || ||||| | |||||||||| | | | |||||| ||||||||||    
T  16581711 tagtggtattggcttggaacctgggagtctgctcctcctcaaggtctcaggttctattatctctg 16581775  T

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