View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1711_low_59 (Length: 290)

Name: NF1711_low_59
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1711_low_59
NF1711_low_59
[»] chr7 (11 HSPs)
chr7 (1-210)||(41830199-41830408)
chr7 (1-141)||(41832605-41832745)
chr7 (1-140)||(8083389-8083528)
chr7 (120-206)||(34510814-34510898)
chr7 (99-194)||(36647433-36647528)
chr7 (78-140)||(7737387-7737449)
chr7 (1-140)||(25432065-25432205)
chr7 (99-140)||(35130642-35130683)
chr7 (60-108)||(23613779-23613827)
chr7 (3-101)||(23613667-23613766)
chr7 (99-140)||(48821855-48821896)
[»] chr2 (6 HSPs)
chr2 (1-210)||(24038262-24038471)
chr2 (1-141)||(31269462-31269602)
chr2 (1-140)||(31180217-31180355)
chr2 (1-140)||(24039457-24039596)
chr2 (13-140)||(36402684-36402811)
chr2 (99-152)||(36316272-36316325)
[»] chr1 (7 HSPs)
chr1 (1-196)||(18705652-18705847)
chr1 (78-206)||(9908117-9908242)
chr1 (129-206)||(20226757-20226831)
chr1 (127-196)||(35270047-35270117)
chr1 (97-140)||(41418180-41418223)
chr1 (127-176)||(29849953-29850000)
chr1 (161-198)||(50038691-50038728)
[»] chr8 (10 HSPs)
chr8 (1-197)||(7277693-7277888)
chr8 (1-141)||(7275143-7275283)
chr8 (97-206)||(4676256-4676364)
chr8 (1-152)||(13856669-13856821)
chr8 (1-133)||(3567495-3567630)
chr8 (99-173)||(26174363-26174437)
chr8 (131-207)||(39327-39402)
chr8 (127-206)||(3788434-3788513)
chr8 (97-140)||(4678201-4678243)
chr8 (127-173)||(35416056-35416102)
[»] chr6 (11 HSPs)
chr6 (3-207)||(8655763-8655964)
chr6 (1-140)||(30689634-30689773)
chr6 (51-206)||(6825444-6825597)
chr6 (60-194)||(24249778-24249910)
chr6 (127-197)||(787424-787494)
chr6 (97-196)||(23343903-23343998)
chr6 (51-140)||(6823035-6823124)
chr6 (99-140)||(6860209-6860250)
chr6 (167-207)||(8837152-8837191)
chr6 (99-142)||(14618732-14618775)
chr6 (60-133)||(1136235-1136309)
[»] chr5 (16 HSPs)
chr5 (1-197)||(21254147-21254342)
chr5 (3-140)||(21256621-21256758)
chr5 (1-152)||(26873149-26873300)
chr5 (106-206)||(35309081-35309181)
chr5 (1-112)||(31339166-31339278)
chr5 (103-207)||(41951665-41951768)
chr5 (86-210)||(30518616-30518739)
chr5 (86-210)||(30558956-30559079)
chr5 (78-140)||(43233901-43233963)
chr5 (99-140)||(27405306-27405347)
chr5 (56-100)||(4730657-4730701)
chr5 (97-141)||(39040538-39040581)
chr5 (99-138)||(31185993-31186032)
chr5 (1-66)||(15531461-15531527)
chr5 (99-140)||(25213866-25213907)
chr5 (99-140)||(25278016-25278057)
[»] scaffold0525 (1 HSPs)
scaffold0525 (1-140)||(2028-2167)
[»] chr4 (7 HSPs)
chr4 (1-140)||(2547019-2547158)
chr4 (127-210)||(5440951-5441033)
chr4 (127-210)||(55851923-55852005)
chr4 (2-140)||(20880038-20880177)
chr4 (78-140)||(27510483-27510545)
chr4 (26-140)||(5444744-5444859)
chr4 (60-140)||(35783779-35783859)
[»] scaffold0862 (1 HSPs)
scaffold0862 (1-141)||(221-361)
[»] scaffold0023 (1 HSPs)
scaffold0023 (1-140)||(111544-111683)
[»] scaffold0251 (1 HSPs)
scaffold0251 (1-106)||(4614-4719)
[»] chr3 (18 HSPs)
chr3 (122-206)||(52737764-52737847)
chr3 (12-152)||(19954439-19954580)
chr3 (3-140)||(10179974-10180112)
chr3 (2-140)||(10018777-10018916)
chr3 (2-140)||(10256091-10256230)
chr3 (4-140)||(10123317-10123454)
chr3 (60-140)||(782838-782918)
chr3 (136-207)||(4602399-4602469)
chr3 (26-140)||(10661756-10661871)
chr3 (1-140)||(8504202-8504342)
chr3 (120-197)||(51306479-51306556)
chr3 (78-142)||(27825691-27825755)
chr3 (78-141)||(33785865-33785928)
chr3 (26-140)||(10511027-10511141)
chr3 (127-196)||(20868834-20868902)
chr3 (99-140)||(35610925-35610966)
chr3 (99-133)||(19439567-19439601)
chr3 (78-140)||(39091329-39091391)
[»] scaffold0001 (2 HSPs)
scaffold0001 (51-206)||(146656-146809)
scaffold0001 (51-140)||(144661-144750)
[»] scaffold0655 (1 HSPs)
scaffold0655 (1-139)||(643-782)
[»] scaffold0263 (1 HSPs)
scaffold0263 (78-140)||(22986-23048)


Alignment Details
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 41830199 - 41830408
Alignment:
Q  1 cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttag 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||| |||||||||| ||||    
T  41830199 cctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatattcaatttacatcaatagaaagagtttcttag 41830298  T
Q  101 ttttctctcattccttccgtggatatcatgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttctctga 200  Q
    |||||||||||||||||| |||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41830299 ttttctctcattccttccatggatgacatgtttcctaacatggtattagagctaacttggtatccaccttgaaggatattttccgctgcattttctctga 41830398  T
Q  201 gaaaatccaa 210  Q
    ||||||||||    
T  41830399 gaaaatccaa 41830408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 41832605 - 41832745
Alignment:
Q  1 cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttag 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||| ||||    
T  41832605 cctagtagagagtagtataaataacttgtaaccaccccattagagggtacttttctcattttgtaatattcaattttcatcaatagaaagagtttcttag 41832704  T
Q  101 ttttctctcattccttccgtggatatcatgtttcctaacat 141  Q
    |||||||||||||||||| |||||  |||||||||||||||    
T  41832705 ttttctctcattccttccatggatgccatgtttcctaacat 41832745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 8083528 - 8083389
Alignment:
Q  1 cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttag 100  Q
    ||||||| |||||||||||||||| || ||||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||| |||||||||||||||    
T  8083528 cctagtaaagagtagtataaataacttctaaccaccccattagagggaacttttgtcattttgtaatatttcattttcatcaatagaaagagttttttag 8083429  T
Q  101 ttttctctcattccttccgtggatatcatgtttcctaaca 140  Q
    ||||||||| |||||||| |||||  ||||||||||||||    
T  8083428 ttttctctccttccttccatggatgccatgtttcctaaca 8083389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 120 - 206
Target Start/End: Original strand, 34510814 - 34510898
Alignment:
Q  120 tggatatcatgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttctctgagaaaat 206  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  34510814 tggatatcatgtttcctaacatggtatcagagctaatctggtatccaccttgaagga-attttccgctgcattttctc-gagaaaat 34510898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 99 - 194
Target Start/End: Complemental strand, 36647528 - 36647433
Alignment:
Q  99 agttttctctcattccttccgtggatatcatgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcatttt 194  Q
    ||||||||||||||| |||  |||||||||||||| |||| ||||||||||||||||  |||||| || |||||||||||||||||||||||||||    
T  36647528 agttttctctcattctttcattggatatcatgttttctaatatggtatcagagctaatctggtattcatcttgaaggatattttccgctgcatttt 36647433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 7737387 - 7737449
Alignment:
Q  78 catcaattgaaagagttttttagttttctctcattccttccgtggatatcatgtttcctaaca 140  Q
    ||||||| |||||| | | |||||||||||||||||||||  |||||||||||||||||||||    
T  7737387 catcaatagaaagattctcttagttttctctcattccttcattggatatcatgtttcctaaca 7737449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 25432065 - 25432205
Alignment:
Q  1 cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttt-tctcattttgtaatattccatttccatcaattgaaag-agtttttt 98  Q
    |||| |||| |||| ||||||||  |||||||||||||||||| ||| |||||  |||| || ||||||||| ||||||||||||  |||| | |||  |    
T  25432065 cctaatagatagtactataaatagcttgtaaccaccccattagtgggcactttcactca-ttcgtaatattcaatttccatcaatataaagaactttgct 25432163  T
Q  99 agttttctctcattccttccgtggatatcatgtttcctaaca 140  Q
    |  ||||||||||||||||| |||||  |||||||| |||||    
T  25432164 acatttctctcattccttccatggatgccatgtttcataaca 25432205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 35130642 - 35130683
Alignment:
Q  99 agttttctctcattccttccgtggatatcatgtttcctaaca 140  Q
    |||||||||||||||||||  |||||||||||||||||||||    
T  35130642 agttttctctcattccttcattggatatcatgtttcctaaca 35130683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 23613779 - 23613827
Alignment:
Q  60 tttgtaatattccatttccatcaattgaaagagttttttagttttctct 108  Q
    ||||||||||| |||||||||||||  ||||||||| ||||||||||||    
T  23613779 tttgtaatatttcatttccatcaataaaaagagtttgttagttttctct 23613827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 101
Target Start/End: Original strand, 23613667 - 23613766
Alignment:
Q  3 tagtagagagtagtataaataatttgtaaccaccccattagagggtactttt--ctcattttgtaatattccatttccatcaattgaaagagttttttag 100  Q
    |||||||  |||||||||||| ||||||||||||  ||||| ||| |  |||  |||| ||||||||||| |||||||||||||  ||||||||| ||||    
T  23613667 tagtagattgtagtataaatagtttgtaaccacctaattagtgggaaactttcactca-tttgtaatatttcatttccatcaataaaaagagtttgttag 23613765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 48821896 - 48821855
Alignment:
Q  99 agttttctctcattccttccgtggatatcatgtttcctaaca 140  Q
    |||||||||||||| ||||| ||||||||||||||| |||||    
T  48821896 agttttctctcatttcttccatggatatcatgtttcataaca 48821855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 146; Significance: 6e-77; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 24038262 - 24038471
Alignment:
Q  1 cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttag 100  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||| |||||||||||||||| ||||||| |||| ||||| ||||    
T  24038262 cctagtagagagtagtataaataacttgtaaccactccattagagggcacttttctcatattgtaatattccattttcatcaatagaaaaagtttcttag 24038361  T
Q  101 ttttctctcattccttccgtggatatcatgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttctctga 200  Q
    |||||||||||||||||| |||||  ||||||| ||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||    
T  24038362 ttttctctcattccttccatggatgccatgttttctaacatggtatcagagcctggttggtatccaccttgaaggatattttccgctgcattttctctga 24038461  T
Q  201 gaaaatccaa 210  Q
    ||||||||||    
T  24038462 gaaaatccaa 24038471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 31269602 - 31269462
Alignment:
Q  1 cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttag 100  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||    
T  31269602 cctagtagagagtaatataaataacttgtaaccaccccattagagggtacttttctcattttgtaatattcaatttccatcaatagaaagagtttcttag 31269503  T
Q  101 ttttctctcattccttccgtggatatcatgtttcctaacat 141  Q
    ||||||||| |||||||| |||||  |||||||||||||||    
T  31269502 ttttctctccttccttccatggatgccatgtttcctaacat 31269462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 31180217 - 31180355
Alignment:
Q  1 cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttag 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  31180217 cctagtagagagtagtataaataacttctaaccaccccattagaggg-acttttctcattttgtaatattccatttccatcaatagaaagagtttcttag 31180315  T
Q  101 ttttctctcattccttccgtggatatcatgtttcctaaca 140  Q
    ||||||||| |||||||| |||||  |||| |||||||||    
T  31180316 ttttctctccttccttccatggatgccatgcttcctaaca 31180355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 24039457 - 24039596
Alignment:
Q  1 cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttag 100  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||| |||||||||||||||| ||||||| |||| ||||| ||||    
T  24039457 cctagtagagagtagtataaataacttgtaaccacctcattagagggcacttttctcatattgtaatattccattttcatcaatagaaaaagtttcttag 24039556  T
Q  101 ttttctctcattccttccgtggatatcatgtttcctaaca 140  Q
    |||||||||||||||||| |||||  ||||||| ||||||    
T  24039557 ttttctctcattccttccatggatgccatgttttctaaca 24039596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 36402811 - 36402684
Alignment:
Q  13 tagtataaataatttgtaaccaccccattagagggtactttt--ctcattttgtaatattccatttccatcaattgaaagagttttttagttttctctca 110  Q
    ||||||||||| ||||||||||||||||||| |||||  |||  |||| |||||||||||| ||||||||||||  |||||| ||| ||| ||||||||     
T  36402811 tagtataaatagtttgtaaccaccccattagtgggtaactttcactca-tttgtaatattctatttccatcaatacaaagag-tttgtagatttctctcc 36402714  T
Q  111 ttccttccgtggatatcatgtttcctaaca 140  Q
    ||| |||| ||||||||||||||| |||||    
T  36402713 ttcattccatggatatcatgtttcataaca 36402684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 36316325 - 36316272
Alignment:
Q  99 agttttctctcattccttccgtggatatcatgtttcctaacatggtatcagagc 152  Q
    |||||||||||||||||||  ||||||||||||||||||| |||||||||||||    
T  36316325 agttttctctcattccttcattggatatcatgtttcctaatatggtatcagagc 36316272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 6e-71; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 18705847 - 18705652
Alignment:
Q  1 cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttag 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||| |||||||||| ||||    
T  18705847 cctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatattctattttcatcaatagaaagagtttcttag 18705748  T
Q  101 ttttctctcattccttccgtggatatcatgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttct 196  Q
    ||||||||| |||||| | |||||  ||||||| |||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||    
T  18705747 ttttctctccttcctttcatggatgccatgttttctaacatggtatcagagctaatctggtatccaccttgaaggattttttccgctgcattttct 18705652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 78 - 206
Target Start/End: Complemental strand, 9908242 - 9908117
Alignment:
Q  78 catcaattgaaagagttttttagttttctctcattccttccgtggatatcatgtttcctaacatggtatcagagctaacttggtatccaccttgaaggat 177  Q
    |||||||  ||||| | ||| ||||||||||||||||||   ||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||     
T  9908242 catcaatacaaagattatttgagttttctctcattccttgt-tggatatcatgtttcctaacatggtatcagagctaatctggtatccaccttgaa-gaa 9908145  T
Q  178 attttccgctgcattttctctgagaaaat 206  Q
    ||||||||||||| ||||| |||||||||    
T  9908144 attttccgctgcactttct-tgagaaaat 9908117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 129 - 206
Target Start/End: Complemental strand, 20226831 - 20226757
Alignment:
Q  129 tgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttctctgagaaaat 206  Q
    |||||||||||||||||||||||||||  |||||||| |||||||||  ||||||||||||||||||| |||||||||    
T  20226831 tgtttcctaacatggtatcagagctaatctggtatcctccttgaagg--attttccgctgcattttct-tgagaaaat 20226757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 35270117 - 35270047
Alignment:
Q  127 catgtttcctaacatggtatcagagc-taacttggtatccaccttgaaggatattttccgctgcattttct 196  Q
    |||||||  ||||||||||||||||| |   |||| |||||||||||| ||||||||||||||||||||||    
T  35270117 catgttttataacatggtatcagagcctggtttggcatccaccttgaatgatattttccgctgcattttct 35270047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 140
Target Start/End: Original strand, 41418180 - 41418223
Alignment:
Q  97 ttagttttctctcattccttccgtggatatcatgtttcctaaca 140  Q
    |||||||||||| ||||||||  |||||||||||||||||||||    
T  41418180 ttagttttctctaattccttcattggatatcatgtttcctaaca 41418223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 29850000 - 29849953
Alignment:
Q  127 catgtttcctaacatggtatcagagctaacttggtatccaccttgaagga 176  Q
    |||||||| ||||||||||||||||| ||  |||||||||||||||||||    
T  29850000 catgtttcataacatggtatcagagcaaa--tggtatccaccttgaagga 29849953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 198
Target Start/End: Original strand, 50038691 - 50038728
Alignment:
Q  161 tatccaccttgaaggatattttccgctgcattttctct 198  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  50038691 tatccaccttgaaggatattttttgctgcattttctct 50038728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 7277888 - 7277693
Alignment:
Q  1 cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttag 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||    
T  7277888 cctagtagagagtagtataaataacttgtaaccaccccattagagggtacttttctcattttgtaatattccattttcatcaatagaaagagtttcttag 7277789  T
Q  101 ttttctctcattccttccgtggatatcatgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttctc 197  Q
    ||||||||| ||| |||| |||||| ||||||||||||||||||||||||||    |||||||||||||||||  || |||||||||||||||||||    
T  7277788 ttttctctccttctttccatggataccatgtttcctaacatggtatcagagcatgattggtatccaccttgaacaat-ttttccgctgcattttctc 7277693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 7275283 - 7275143
Alignment:
Q  1 cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttag 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||    
T  7275283 cctagtagagagtagtataaataacttgtaaccaccccattagagggtacttttctcattttgtaatattccattttcatcaatagaaagagtttcttag 7275184  T
Q  101 ttttctctcattccttccgtggatatcatgtttcctaacat 141  Q
    ||||||||| ||| || | |||||| |||||||||||||||    
T  7275183 ttttctctccttcttttcatggataccatgtttcctaacat 7275143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 97 - 206
Target Start/End: Original strand, 4676256 - 4676364
Alignment:
Q  97 ttagttttctctcattccttccgtggatatcatgtttcctaacatggtatcagagctaacttggtatccaccttgaaggata-ttttccgctgcattttc 195  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  4676256 ttagttttctctcattccttc-gtggatatcatgtttcctaatatggtatcagagctaacctggtatccaccttgaaggatatttttccgctgcattttc 4676354  T
Q  196 tctgagaaaat 206  Q
    | |||||||||    
T  4676355 t-tgagaaaat 4676364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 13856669 - 13856821
Alignment:
Q  1 cctagtagagagtagtataaataatttgtaaccaccccattagagggt-actttt-ctcattttgtaatattccatttccatcaattgaaagagtttttt 98  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||  ||||||| ||| ||||||||||| ||||||  |||| |||  ||    
T  13856669 cctagtagagagtagtataaataacttgtaaccaccccattagagggttactttcactcattt-gtagtattccatttctatcaatacaaagtgttcgtt 13856767  T
Q  99 agttttctctcattccttccgtggatatcatgtttcctaacatggtatcagagc 152  Q
    ||||||||||| ||| |||| ||||| ||||||||| |||||||||||||||||    
T  13856768 agttttctctccttctttccatggatgtcatgtttcataacatggtatcagagc 13856821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 3567630 - 3567495
Alignment:
Q  1 cctagtagagagtagtataaataatttgtaaccaccccattagaggg-tactttt---ctcattttgtaatattccatttccatcaattgaaagagtttt 96  Q
    ||||| ||||||||||||||||||  ||||||||||| ||||||||| |||||||   ||||||| |||||||||||||| |||||||  |||||||||     
T  3567630 cctagcagagagtagtataaataacctgtaaccaccctattagagggatactttttcactcattt-gtaatattccattttcatcaatacaaagagtttg 3567532  T
Q  97 ttagttttctctcattccttccgtggatatcatgttt 133  Q
    |||| ||||| || ||||||||  |||| ||||||||    
T  3567531 ttagatttctttccttccttccacggatgtcatgttt 3567495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 173
Target Start/End: Original strand, 26174363 - 26174437
Alignment:
Q  99 agttttctctcattccttccgtggatatcatgtttcctaacatggtatcagagctaacttggtatccaccttgaa 173  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||| | ||  ||||||||||||||||    
T  26174363 agttttctctcattccttccttggatatcatgtttactaacatggtatcagaacaaatatggtatccaccttgaa 26174437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 39327 - 39402
Alignment:
Q  131 tttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttctctgagaaaatc 207  Q
    |||| ||||||| ||||||||||||   | ||||||||||||||||||||||||||||||||||||| |||||||||    
T  39327 tttcttaacatgatatcagagctaatccgatatccaccttgaaggatattttccgctgcattttctc-gagaaaatc 39402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 206
Target Start/End: Complemental strand, 3788513 - 3788434
Alignment:
Q  127 catgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttctctgagaaaat 206  Q
    ||||||||  ||||||||||||||||    |||||||||||||||||  || |||||||||||||||| | |||||||||    
T  3788513 catgtttctcaacatggtatcagagcatgattggtatccaccttgaacaattttttccgctgcattttttttgagaaaat 3788434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 140
Target Start/End: Original strand, 4678201 - 4678243
Alignment:
Q  97 ttagttttctctcattccttccgtggatatcatgtttcctaaca 140  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  4678201 ttagttttctctcattccttc-gtggatatcatgtttcctaaca 4678243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 173
Target Start/End: Complemental strand, 35416102 - 35416056
Alignment:
Q  127 catgtttcctaacatggtatcagagctaacttggtatccaccttgaa 173  Q
    |||||||| |||||||||||||||||  | |||||||||||||||||    
T  35416102 catgtttcttaacatggtatcagagcataattggtatccaccttgaa 35416056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 126; Significance: 5e-65; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 3 - 207
Target Start/End: Complemental strand, 8655964 - 8655763
Alignment:
Q  3 tagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttagtt 102  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  8655964 tagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatattccatttccatcaatagaaagagtttcttagtt 8655865  T
Q  103 ttctctcattccttccgtggatatcatgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttctctgaga 202  Q
    ||||||| |||||||  |||||  ||||||||||||||||||||||||||| |  ||||| ||||||||||||  |||||||  ||||||||||| ||||    
T  8655864 ttctctccttccttctatggatgccatgtttcctaacatggtatcagagcttatctggtacccaccttgaagg--attttcccttgcattttctc-gaga 8655768  T
Q  203 aaatc 207  Q
    |||||    
T  8655767 aaatc 8655763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 30689773 - 30689634
Alignment:
Q  1 cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||| |||||||||| ||||    
T  30689773 cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatatttcactttcatcaatagaaagagtttcttag 30689674  T
Q  101 ttttctctcattccttccgtggatatcatgtttcctaaca 140  Q
    |||||||||||||||| | |||||  ||||||||||||||    
T  30689673 ttttctctcattcctttcatggatgccatgtttcctaaca 30689634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 51 - 206
Target Start/End: Complemental strand, 6825597 - 6825444
Alignment:
Q  51 ttttctcattttgtaatattccatttccatcaattgaaagagttttttagttttctctcattccttccgtggatatcatgtttcctaacatggtatcaga 150  Q
    ||||||||||||||||||||||||||| ||||||  ||||||||| |||| ||| |||| |||||||| |||||  |||||||||||||||||||| |||    
T  6825597 ttttctcattttgtaatattccatttctatcaatacaaagagtttgttagatttatctccttccttccatggatgccatgtttcctaacatggtattaga 6825498  T
Q  151 gctaacttggtatccaccttgaaggatattttccgctgcattttctctgagaaaat 206  Q
    ||    |||||||||||||||||  || ||||||||||||||||||| ||||||||    
T  6825497 gcatgattggtatccaccttgaacaat-ttttccgctgcattttctc-gagaaaat 6825444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 60 - 194
Target Start/End: Original strand, 24249778 - 24249910
Alignment:
Q  60 tttgtaatattccatttccatcaattgaaagagttttttagttttctctcattccttccgtggatatcatgtttcctaacatggtatcagagctaacttg 159  Q
    ||||||||||||||||||||| |||  ||||||||| ||||||||||||||||| || | | |||  |||||||||||||||||||||||||||||  ||    
T  24249778 tttgtaatattccatttccattaatacaaagagtttgttagttttctctcattctttacattgatgccatgtttcctaacatggtatcagagctaatctg 24249877  T
Q  160 gtatccaccttgaaggatattttccgctgcatttt 194  Q
     |||||||||| ||||  |||||| ||||||||||    
T  24249878 atatccacctttaagg--attttctgctgcatttt 24249910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 787424 - 787494
Alignment:
Q  127 catgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttctc 197  Q
    |||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||    
T  787424 catgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttctc 787494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 97 - 196
Target Start/End: Original strand, 23343903 - 23343998
Alignment:
Q  97 ttagttttctctcattccttccgtggatatcatgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttct 196  Q
    |||||||||||||||||||||  ||||||| |||||||  |||||||||||||||  ||| ||||||||||||||||||||||||||||||||| |||||    
T  23343903 ttagttttctctcattccttcattggatataatgtttc--aacatggtatcagag--aacctggtatccaccttgaaggatattttccgctgcactttct 23343998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 51 - 140
Target Start/End: Complemental strand, 6823124 - 6823035
Alignment:
Q  51 ttttctcattttgtaatattccatttccatcaattgaaagagttttttagttttctctcattccttccgtggatatcatgtttcctaaca 140  Q
    ||||||||||||||||||||||||||| ||||||  ||||||||| |||| ||| |||| |||||||| || || |||||||| ||||||    
T  6823124 ttttctcattttgtaatattccatttctatcaatacaaagagtttgttagatttatctccttccttccatgaatgtcatgttttctaaca 6823035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 6860209 - 6860250
Alignment:
Q  99 agttttctctcattccttccgtggatatcatgtttcctaaca 140  Q
    |||||||||||||||||||| |||||||||||||| ||||||    
T  6860209 agttttctctcattccttccttggatatcatgtttactaaca 6860250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 8837191 - 8837152
Alignment:
Q  167 ccttgaaggatattttccgctgcattttctctgagaaaatc 207  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  8837191 ccttgaaggatattttccgctgcattttctc-gagaaaatc 8837152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 142
Target Start/End: Complemental strand, 14618775 - 14618732
Alignment:
Q  99 agttttctctcattccttccgtggatatcatgtttcctaacatg 142  Q
    |||||||| ||||||||||| |||||||||||||| ||||||||    
T  14618775 agttttctttcattccttccttggatatcatgtttactaacatg 14618732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 1136309 - 1136235
Alignment:
Q  60 tttgtaatattccatttccatcaattgaaagagttttt-tagttttctctcattccttccgtggatatcatgttt 133  Q
    |||||||||||| ||||||||||||  |||||| |||  ||  ||||||||||||||||| ||||| ||||||||    
T  1136309 tttgtaatattcaatttccatcaatataaagagatttgctatatttctctcattccttccatggatgtcatgttt 1136235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 21254147 - 21254342
Alignment:
Q  1 cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttag 100  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||| ||| ||||||| |||||||||| |||     
T  21254147 cctagtagagagtagtataaataacttgtaaccgccccattagagggaacttttctcattttgtaatattcctttttcatcaatagaaagagtttgttac 21254246  T
Q  101 ttttctctcattccttccgtggatatcatgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttctc 197  Q
    ||||||||| |||||||| |||||  |||||||||||||||||||||| |||    |||||||||||||||||  || |||||||||||||||||||    
T  21254247 ttttctctccttccttccatggatgccatgtttcctaacatggtatcatagcatgattggtatccaccttgaacaat-ttttccgctgcattttctc 21254342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 3 - 140
Target Start/End: Original strand, 21256621 - 21256758
Alignment:
Q  3 tagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttagtt 102  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||| ||||||    
T  21256621 tagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatattccattttcatcaatagaaagagtttgttagtt 21256720  T
Q  103 ttctctcattccttccgtggatatcatgtttcctaaca 140  Q
    ||||||| |||||||| |||||  ||||||||||||||    
T  21256721 ttctctccttccttccatggatgccatgtttcctaaca 21256758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 26873300 - 26873149
Alignment:
Q  1 cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttag 100  Q
    ||||||||||||||||| |||||| |||||| ||  ||||||||||  ||||||||||||| ||||||||| |||||||||||| |||||||||| ||||    
T  26873300 cctagtagagagtagtaaaaataacttgtaatcattccattagaggaaacttttctcatttcgtaatattctatttccatcaatagaaagagtttcttag 26873201  T
Q  101 ttttctctcattccttccgtggatatcatgtttcctaacatggtatcagagc 152  Q
    ||||||||| |||||||| |||||  ||||||||||||||||||||||||||    
T  26873200 ttttctctccttccttccatggatgccatgtttcctaacatggtatcagagc 26873149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 106 - 206
Target Start/End: Complemental strand, 35309181 - 35309081
Alignment:
Q  106 tctcattccttccgtggatatcatgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttctctgagaaaa 205  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| | ||||||||    
T  35309181 tctcattccttcattggatatcatgtttcctaacatggtatcagagctaatctggtatccaccttgaaggatattttccgctgcattttttttgagaaaa 35309082  T
Q  206 t 206  Q
    |    
T  35309081 t 35309081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 31339278 - 31339166
Alignment:
Q  1 cctagtagagagtagtataaataatttgtaaccaccccattagagggt-acttttctcattttgtaatattccatttccatcaattgaaagagtttttta 99  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||| | ||  ||||||||||||||||| ||||||||| || |||||||||| |||    
T  31339278 cctagtagagagtagtataaataacttgtaaccaccccattagtgggtcaattcactcattttgtaatattcaatttccatcgatagaaagagtttctta 31339179  T
Q  100 gttttctctcatt 112  Q
    |||||||||||||    
T  31339178 gttttctctcatt 31339166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 103 - 207
Target Start/End: Complemental strand, 41951768 - 41951665
Alignment:
Q  103 ttctctcattccttccgtggatatcatgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttctctgaga 202  Q
    |||||||||||||||| |||||  |||||||||||||||||||| ||||||||  |||||||| ||||||||||||||||||||||||||||||| ||||    
T  41951768 ttctctcattccttccatggatgccatgtttcctaacatggtattagagctaatctggtatccgccttgaaggatattttccgctgcattttctc-gaga 41951670  T
Q  203 aaatc 207  Q
    |||||    
T  41951669 aaatc 41951665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 30518739 - 30518616
Alignment:
Q  86 gaaagagttttttagttttctctcattccttccgtggatatcatgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccg 185  Q
    |||||| ||||| ||||||||||  |||||||  || |||||||||||  ||||||||||| ||||||||  ||||||||||||| || |||||||||||    
T  30518739 gaaagattttttgagttttctcttgttccttctatgtatatcatgttttataacatggtataagagctaatctggtatccaccttaaaagatattttccg 30518640  T
Q  186 ctgcattttctctgagaaaatccaa 210  Q
    ||||||||||| |||||||||||||    
T  30518639 ctgcattttct-tgagaaaatccaa 30518616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 30559079 - 30558956
Alignment:
Q  86 gaaagagttttttagttttctctcattccttccgtggatatcatgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccg 185  Q
    |||||| ||||| ||||||||||  |||||||  || |||||||||||  ||||||||||| ||||||||  ||||||||||||| || |||||||||||    
T  30559079 gaaagattttttgagttttctcttgttccttctatgtatatcatgttttataacatggtataagagctaatctggtatccaccttaaaagatattttccg 30558980  T
Q  186 ctgcattttctctgagaaaatccaa 210  Q
    ||||||||||| |||||||||||||    
T  30558979 ctgcattttct-tgagaaaatccaa 30558956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 43233901 - 43233963
Alignment:
Q  78 catcaattgaaagagttttttagttttctctcattccttccgtggatatcatgtttcctaaca 140  Q
    ||||||| |||||| | ||| |||||||||||||||||||| |||||  ||||||||||||||    
T  43233901 catcaatagaaagattctttgagttttctctcattccttccatggatgccatgtttcctaaca 43233963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 27405347 - 27405306
Alignment:
Q  99 agttttctctcattccttccgtggatatcatgtttcctaaca 140  Q
    |||||||||||||||||||  |||||||||||||||||||||    
T  27405347 agttttctctcattccttcattggatatcatgtttcctaaca 27405306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 4730657 - 4730701
Alignment:
Q  56 tcattttgtaatattccatttccatcaattgaaagagttttttag 100  Q
    |||||||||||||||||||||||||||||  ||||||||| ||||    
T  4730657 tcattttgtaatattccatttccatcaatacaaagagtttgttag 4730701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 39040581 - 39040538
Alignment:
Q  97 ttagttttctctcattccttccgtggatatcatgtttcctaacat 141  Q
    ||||||||||||||||||||  |||||||||||||||||||||||    
T  39040581 ttagttttctctcattccttt-gtggatatcatgtttcctaacat 39040538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 138
Target Start/End: Complemental strand, 31186032 - 31185993
Alignment:
Q  99 agttttctctcattccttccgtggatatcatgtttcctaa 138  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  31186032 agttttctctcattccttcgttggatatcatgtttcctaa 31185993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 15531527 - 15531461
Alignment:
Q  1 cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttt-tctcattttgtaa 66  Q
    |||| |||| |||| |||||||| ||||||||||||||||||| ||| |||||  ||||||||||||    
T  15531527 cctaatagatagtactataaatagtttgtaaccaccccattagtgggaactttcactcattttgtaa 15531461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 25213866 - 25213907
Alignment:
Q  99 agttttctctcattccttccgtggatatcatgtttcctaaca 140  Q
    |||||||||||||||| ||  |||||||||||||||||||||    
T  25213866 agttttctctcattccctcattggatatcatgtttcctaaca 25213907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 25278016 - 25278057
Alignment:
Q  99 agttttctctcattccttccgtggatatcatgtttcctaaca 140  Q
    |||||||||||||||| ||  |||||||||||||||||||||    
T  25278016 agttttctctcattccctcattggatatcatgtttcctaaca 25278057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0525 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 2167 - 2028
Alignment:
Q  1 cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttag 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  2167 cctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatattccatttccatcaatagaaagagtttcttag 2068  T
Q  101 ttttctctcattccttccgtggatatcatgtttcctaaca 140  Q
    ||||||||| |||||||| |||||  ||||||||| ||||    
T  2067 ttttctctccttccttccatggatgccatgtttcccaaca 2028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 2547019 - 2547158
Alignment:
Q  1 cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttag 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||  ||||||||| ||||    
T  2547019 cctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatattccatttctatcaatacaaagagtttgttag 2547118  T
Q  101 ttttctctcattccttccgtggatatcatgtttcctaaca 140  Q
     |||||||| |||||||| ||||| |||||||||||||||    
T  2547119 atttctctccttccttccatggatgtcatgtttcctaaca 2547158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 210
Target Start/End: Original strand, 5440951 - 5441033
Alignment:
Q  127 catgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttctctgagaaaatccaa 210  Q
    |||||||||||||||||||||||||||||| |||||||||  |||||||||||||||| |||||||||||| ||||||||||||    
T  5440951 catgtttcctaacatggtatcagagctaacctggtatccattttgaaggatattttcccctgcattttctc-gagaaaatccaa 5441033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 210
Target Start/End: Complemental strand, 55852005 - 55851923
Alignment:
Q  127 catgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttctctgagaaaatccaa 210  Q
    ||||||||||||||| |||||||||| |  ||||||||||||| ||| ||||||||||||||||||||||  ||||||||||||    
T  55852005 catgtttcctaacatcgtatcagagcaagattggtatccacctcgaatgatattttccgctgcattttct-agagaaaatccaa 55851923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 20880177 - 20880038
Alignment:
Q  2 ctagtagagagtagtataaataatttgtaaccaccccattagaggg-tacttttc-tcattttgtaatattccatttccatcaattgaaagagtttttta 99  Q
    |||||||| |||||||||||||| |||||||||||||||||| ||| ||||  || ||| |||||||  ||| |||  ||| |||  ||||||||  |||    
T  20880177 ctagtagacagtagtataaataacttgtaaccaccccattagtgggatactgctcatca-tttgtaactttctattctcattaatacaaagagttagtta 20880079  T
Q  100 gttttctctcattccttccgtggatatcatgtttcctaaca 140  Q
     |||||||||||||||||| ||||||||||| ||| |||||    
T  20880078 cttttctctcattccttccatggatatcatgcttcataaca 20880038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 140
Target Start/End: Complemental strand, 27510545 - 27510483
Alignment:
Q  78 catcaattgaaagagttttttagttttctctcattccttccgtggatatcatgtttcctaaca 140  Q
    ||||||| |||||| | | |||||||||||||||||||||  |||||||||||||||||||||    
T  27510545 catcaatagaaagattctcttagttttctctcattccttcattggatatcatgtttcctaaca 27510483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 5444744 - 5444859
Alignment:
Q  26 ttgtaaccaccccattagagggta-cttttctcattttgtaatattccatttccatcaattgaaagagttttttag-ttttctctcattccttccgtgga 123  Q
    ||||||||||| ||||||| |||| || || |||||| ||||||||||||||| ||||||  ||||||||| |||| ||||| ||| ||| |||| | ||    
T  5444744 ttgtaaccacctcattagaaggtatctcttatcattt-gtaatattccatttcaatcaatacaaagagtttgttagtttttccctccttctttccataga 5444842  T
Q  124 tatcatgtttcctaaca 140  Q
    |  ||||||||||||||    
T  5444843 tgccatgtttcctaaca 5444859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 35783779 - 35783859
Alignment:
Q  60 tttgtaatattccatttccatcaattgaaagagttttttagttttctctcattccttccgtggatatcatgtttcctaaca 140  Q
    |||||||||||||||||| ||||||  ||||||||| ||||||||  ||| ||| |||| |||||  |||||||| |||||    
T  35783779 tttgtaatattccatttcaatcaatacaaagagtttgttagtttttcctccttctttccatggatgccatgtttcttaaca 35783859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0862 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0862
Description:

Target: scaffold0862; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 221 - 361
Alignment:
Q  1 cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttag 100  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||| ||||    
T  221 cctagtagagaatagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatattccattttcatcaatagaaagagtttcttag 320  T
Q  101 ttttctctcattccttccgtggatatcatgtttcctaacat 141  Q
    ||||||||| |||||| | |||||  |||||||||||||||    
T  321 ttttctctccttcctttcatggatgccatgtttcctaacat 361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 111683 - 111544
Alignment:
Q  1 cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttag 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||  ||||||||| |||     
T  111683 cctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatattccatttaaatcaataaaaagagtttattaa 111584  T
Q  101 ttttctctcattccttccgtggatatcatgtttcctaaca 140  Q
     |||||||| |||||||| |||||  ||||||||||||||    
T  111583 atttctctccttccttccatggatgccatgtttcctaaca 111544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 4614 - 4719
Alignment:
Q  1 cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttag 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||  |||||||||||||| ||||| ||||||| |||||||||| ||||    
T  4614 cctagtagagagtagtataaataatttgtaaccaccctattagagggaactttttccattttgtaatatttcattttcatcaatagaaagagtttcttag 4713  T
Q  101 ttttct 106  Q
    ||||||    
T  4714 ttttct 4719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 206
Target Start/End: Complemental strand, 52737847 - 52737764
Alignment:
Q  122 gatatcatgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttctctgagaaaat 206  Q
    ||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  52737847 gatatcatgtttcctaacatggtatcagagcaaatctggtatccaccttgaaggatattttccgctgcattttct-tgagaaaat 52737764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 152
Target Start/End: Complemental strand, 19954580 - 19954439
Alignment:
Q  12 gtagtataaataatttgtaaccaccccattagagggtacttttc--tcattttgtaatattccatttccatcaattgaaagagttttttagttttctctc 109  Q
    |||||||||||| |||||||| ||| |||||| |||||  ||||  |||||| ||| ||||||||||||||||||  |||||| || |||| ||||||||    
T  19954580 gtagtataaatagtttgtaacaacctcattagtgggtaactttcactcattt-gtattattccatttccatcaatacaaagagattgttagatttctctc 19954482  T
Q  110 attccttccgtggatatcatgtttcctaacatggtatcagagc 152  Q
     |||||||| ||||| ||||||||| |||||||||||||||||    
T  19954481 cttccttccatggatgtcatgtttcataacatggtatcagagc 19954439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 140
Target Start/End: Complemental strand, 10180112 - 10179974
Alignment:
Q  3 tagtagagagtagtataaataatttgtaaccaccccattagagggt-actttt-ctcattttgtaatattccatttccatcaattgaaagagttttttag 100  Q
    |||||||||||| ||||||||| |||||| || || |||||||||| |||||  ||||||| |||||||| |||||||||||||  ||||||||| ||||    
T  10180112 tagtagagagtaatataaataacttgtaatcatcctattagagggttactttcactcattt-gtaatatttcatttccatcaatacaaagagtttgttag 10180014  T
Q  101 ttttctctcattccttccgtggatatcatgtttcctaaca 140  Q
    ||||||||| ||| || | ||||| |||||||||||||||    
T  10180013 ttttctctccttcttttcatggatgtcatgtttcctaaca 10179974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 10018916 - 10018777
Alignment:
Q  2 ctagtagagagtagtataaataatttgtaaccaccccattagagggt-actttt-ctcattttgtaatattccatttccatcaattgaaagagtttttta 99  Q
    ||||||||||||||||||||||| |||||| ||||  |||||| ||| ||||   ||||||| |||||||| |||||||||||||  ||||||||| |||    
T  10018916 ctagtagagagtagtataaataacttgtaatcaccttattagatggttacttccactcattt-gtaatatttcatttccatcaatacaaagagtttgtta 10018818  T
Q  100 gttttctctcattccttccgtggatatcatgtttcctaaca 140  Q
    |||||||||| ||| |||| |||||  ||||||||||||||    
T  10018817 gttttctctccttctttccatggatgccatgtttcctaaca 10018777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 10256230 - 10256091
Alignment:
Q  2 ctagtagagagtagtataaataatttgtaaccaccccattagagggt-actttt-ctcattttgtaatattccatttccatcaattgaaagagtttttta 99  Q
    ||||||||||||||||||||||| |||||||||||  |||||| ||| ||||   ||||||| |||||||| |||||||||||||  ||| ||||| |||    
T  10256230 ctagtagagagtagtataaataacttgtaaccaccttattagatggttacttccactcattt-gtaatatttcatttccatcaatacaaaaagtttgtta 10256132  T
Q  100 gttttctctcattccttccgtggatatcatgtttcctaaca 140  Q
    |||||||||| ||| |||| |||||  ||||||||||||||    
T  10256131 gttttctctccttctttccatggatgccatgtttcctaaca 10256091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 140
Target Start/End: Complemental strand, 10123454 - 10123317
Alignment:
Q  4 agtagagagtagtataaataatttgtaaccaccccattagagggt-actttt-ctcattttgtaatattccatttccatcaattgaaagagttttttagt 101  Q
    |||||| |||||||||||||| |||||||||||  |||||||||| ||||   ||||||| |||||||| |||||||||||||  ||||||||| |||||    
T  10123454 agtagaaagtagtataaataacttgtaaccaccttattagagggttacttccactcattt-gtaatatttcatttccatcaatacaaagagtttgttagt 10123356  T
Q  102 tttctctcattccttccgtggatatcatgtttcctaaca 140  Q
    |||||||| ||| || | |||||  ||||||||||||||    
T  10123355 tttctctccttcttttcatggatgccatgtttcctaaca 10123317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 782918 - 782838
Alignment:
Q  60 tttgtaatattccatttccatcaattgaaagagttttttagttttctctcattccttccgtggatatcatgtttcctaaca 140  Q
    |||||||||||||||||| ||||||  ||||||||| |||| |||||||| |||||||| ||||| |||||||||||||||    
T  782918 tttgtaatattccatttctatcaatacaaagagtttgttagatttctctccttccttccatggatgtcatgtttcctaaca 782838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 4602399 - 4602469
Alignment:
Q  136 taacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttctctgagaaaatc 207  Q
    ||||||||||||||||||||| | |||||||||||||||||  ||||||||||||||||||| |||||||||    
T  4602399 taacatggtatcagagctaacctagtatccaccttgaaggaatttttccgctgcattttctc-gagaaaatc 4602469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 10661871 - 10661756
Alignment:
Q  26 ttgtaaccaccccattagaggg-tactttt-ctcattttgtaatattccattt-ccatcaattgaaagagttttttagttttctctcattccttccgtgg 122  Q
    |||||||||||||||||| ||| ||||||  ||||||| |||||||||||||| |||| | |  ||||||||| ||||||||||||||||| |||| |||    
T  10661871 ttgtaaccaccccattagtgggatactttcactcattt-gtaatattccattttccat-actacaaagagtttgttagttttctctcattctttccatgg 10661774  T
Q  123 atatcatgtttcctaaca 140  Q
    || |||||||||||||||    
T  10661773 atgtcatgtttcctaaca 10661756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 8504342 - 8504202
Alignment:
Q  1 cctagtagagagtagtataaataatttgtaaccaccccattagagggt-acttttctcattttgtaatattccatttc-catcaattgaaagagtttttt 98  Q
    ||||||| |||||||||||||||| ||||||| |||  |||||||||| | ||  ||||||| || ||||||  |||  ||||||| |||||  | |||     
T  8504342 cctagtaaagagtagtataaataacttgtaacaaccaaattagagggtcaattcactcattt-gtgatattcactttatcatcaatagaaagcttatttg 8504244  T
Q  99 agttttctctcattccttccgtggatatcatgtttcctaaca 140  Q
    |||||||||||||||||||| ||||| ||||| |||||||||    
T  8504243 agttttctctcattccttccatggatttcatgattcctaaca 8504202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 197
Target Start/End: Original strand, 51306479 - 51306556
Alignment:
Q  120 tggatatcatgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttctc 197  Q
    ||||| |||||||||  ||||||||||||||||    |||||||||||||||||  || |||||||||||||||||||    
T  51306479 tggatgtcatgtttctcaacatggtatcagagcatgattggtatccaccttgaacaattttttccgctgcattttctc 51306556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 27825755 - 27825691
Alignment:
Q  78 catcaattgaaagagttttttagttttctctcattccttccgtggatatcatgtttcctaacatg 142  Q
    |||||||  ||||| | ||| |||||||||||||||||||  |||||||||||||||||||||||    
T  27825755 catcaatacaaagattatttgagttttctctcattccttcattggatatcatgtttcctaacatg 27825691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 33785865 - 33785928
Alignment:
Q  78 catcaattgaaagagttttttagttttctctcattccttccgtggatatcatgtttcctaacat 141  Q
    |||||||  ||||| | ||| |||||||||||||||||||  ||||||||||||||||||||||    
T  33785865 catcaatacaaagattgtttgagttttctctcattccttcattggatatcatgtttcctaacat 33785928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 10511141 - 10511027
Alignment:
Q  26 ttgtaaccaccccattagaggg-tacttttc-tcattttgtaatattccattt-ccatcaattgaaagagttttttagttttctctcattccttccgtgg 122  Q
    |||||||||||||||||| ||| |||||| | |||||| |||||||||||||| |||| |||  ||||||||| ||||||||||||||||| |||| | |    
T  10511141 ttgtaaccaccccattagtgggatactttccctcattt-gtaatattccattttccat-aatacaaagagtttgttagttttctctcattctttccatag 10511044  T
Q  123 atatcatgtttcctaaca 140  Q
    ||  ||||||||||||||    
T  10511043 at-gcatgtttcctaaca 10511027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 20868834 - 20868902
Alignment:
Q  127 catgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttct 196  Q
    ||||||||| ||||||||||||||||    |||||||||||||||||  | |||||||||||||||||||    
T  20868834 catgtttcccaacatggtatcagagcatgattggtatccaccttgaaaca-attttccgctgcattttct 20868902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 35610925 - 35610966
Alignment:
Q  99 agttttctctcattccttccgtggatatcatgtttcctaaca 140  Q
    |||||||||||||||||||  |||||||||||||||||||||    
T  35610925 agttttctctcattccttcattggatatcatgtttcctaaca 35610966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 133
Target Start/End: Original strand, 19439567 - 19439601
Alignment:
Q  99 agttttctctcattccttccgtggatatcatgttt 133  Q
    |||||||||||||||||||| ||||||||||||||    
T  19439567 agttttctctcattccttccttggatatcatgttt 19439601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 140
Target Start/End: Complemental strand, 39091391 - 39091329
Alignment:
Q  78 catcaattgaaagagttttttagttttctctcattccttccgtggatatcatgtttcctaaca 140  Q
    ||||||| |||| | | ||| |||||||||||||||||||  ||||||||||||||| |||||    
T  39091391 catcaatagaaatattatttgagttttctctcattccttcattggatatcatgtttcataaca 39091329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 51 - 206
Target Start/End: Complemental strand, 146809 - 146656
Alignment:
Q  51 ttttctcattttgtaatattccatttccatcaattgaaagagttttttagttttctctcattccttccgtggatatcatgtttcctaacatggtatcaga 150  Q
    ||||||||||||||||||||||||||| ||||||  ||||||||| |||| ||| |||| |||||||  | |||  |||||||||||||||||||||| |    
T  146809 ttttctcattttgtaatattccatttctatcaatataaagagtttgttagatttatctccttccttctatagatgccatgtttcctaacatggtatcaaa 146710  T
Q  151 gctaacttggtatccaccttgaaggatattttccgctgcattttctctgagaaaat 206  Q
    ||    |||||||||||||||||  || ||||||||||||||||||| ||||||||    
T  146709 gcatgattggtatccaccttgaacaat-ttttccgctgcattttctc-gagaaaat 146656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 51 - 140
Target Start/End: Complemental strand, 144750 - 144661
Alignment:
Q  51 ttttctcattttgtaatattccatttccatcaattgaaagagttttttagttttctctcattccttccgtggatatcatgtttcctaaca 140  Q
    ||||||||||||||||||||||||||| ||||||  ||||||||| |||| ||| |||| |||||||| | |||  ||||||||||||||    
T  144750 ttttctcattttgtaatattccatttctatcaatataaagagtttgttagatttatctccttccttccatagatgccatgtttcctaaca 144661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 643 - 782
Alignment:
Q  1 cctagtagagagtagtataaataatttgtaaccaccccattagagggt-acttttctcattttgtaatattccatttccatcaattgaaagag-tttttt 98  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||| ||||  |||||||| |||||||| ||||||||||||  |||||| |||  |    
T  643 cctagtagagagtagtataaataacttgtatccaccccattagagggtgacttcactcatttt-taatattcaatttccatcaatacaaagagctttact 741  T
Q  99 agttttctctcattccttccgtggatatcatgtttcctaac 139  Q
    | |||||||||||||||||   ||||  |||||||||||||    
T  742 acttttctctcattccttcgacggatgccatgtttcctaac 782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 22986 - 23048
Alignment:
Q  78 catcaattgaaagagttttttagttttctctcattccttccgtggatatcatgtttcctaaca 140  Q
    ||||||| |||| | | ||| |||||||||||||||||||  |||||||||||||||||||||    
T  22986 catcaatagaaatattatttgagttttctctcattccttcattggatatcatgtttcctaaca 23048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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