View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_low_6 (Length: 589)
Name: NF1711_low_6
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 558; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 13 - 574
Target Start/End: Original strand, 54774575 - 54775136
Alignment:
| Q |
13 |
cagagacaatggcaagcaaaccatttttaatagcaagtgaatgaacctgtctaccagtgtacacaaacacatcacttgtcaatgcacttagaacactagt |
112 |
Q |
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| T |
54774575 |
cagagacaatggcaagcaaaccatttttaatagcaagtgaatgaacctgtctaccagtgtacacaaacacatcacttgtcaatgcacttagaacactagt |
54774674 |
T |
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| Q |
113 |
gagagcaaactcattttgaatctcttcctcacgccgcataagttcaaaaacctcaaccgccttatcagcaatatcactagaagcatacccagaaatcata |
212 |
Q |
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| T |
54774675 |
gagagcaaactcattttgaatctcttcctcacgccgcataagttcaaaaacctcaaccgccttatcagcaatatcactagaagcatacccagaaatcata |
54774774 |
T |
|
| Q |
213 |
gtagcccaagaaaccgtatttctctcaggcattctgtcaaacagtttacgagcatcgaaaacaaaaccagttttacaatacatattaagaagagaacttc |
312 |
Q |
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| T |
54774775 |
gtagcccaagaaaccgtatttctctcaggcattctgtcaaacagtttacgagcatcgaaaacaaaaccagttttacaatacatattaagaagagaacttc |
54774874 |
T |
|
| Q |
313 |
ccacatatacatcaccagaacatccagtcttaactgcaacagaatgagcttgttttccggctactacgtcagaaagattagaagcagccaagaaaacacc |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
54774875 |
ccacatatacatcaccagaacatccagtcttaactgcaacagaatgagcttgttttccggctactacgtcagaaagattagaagcagccgagaaaacacc |
54774974 |
T |
|
| Q |
413 |
ggcgagtgtatgggcattagggatcacattattggcacgcatcatacgacgaaagaggcttatagcgaaggaagaagatgaagaggaatggttttgagag |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54774975 |
ggcgagtgtatgggcattagggatcacattattggcacgcatcatacgacgaaagaggcttatagcgaaggaagaagatgaagaggaatggttttgagag |
54775074 |
T |
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| Q |
513 |
aaagcgttgatgagagagttccatgaaacgtcgtctttgtcgttgtcgtttatagaatcaaa |
574 |
Q |
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| T |
54775075 |
aaagcgttgatgagagagttccatgaaacgtcgtctttgtcgttgtcgtttatagaatcaaa |
54775136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 30163389 - 30163352
Alignment:
| Q |
218 |
ccaagaaaccgtatttctctcaggcattctgtcaaaca |
255 |
Q |
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| T |
30163389 |
ccaagaaaccacatttctctcaggcattctgtcaaaca |
30163352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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