View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_low_64 (Length: 280)
Name: NF1711_low_64
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_low_64 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 266
Target Start/End: Original strand, 343060 - 343296
Alignment:
| Q |
17 |
aaagtactatttcatcattaattaggaacttttgttgcatcaatggtgatgtcaatcatttcttccccaatattgcttcaagttcatcattaacaaaaat |
116 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
343060 |
aaagtactatttcatcatta----ggaacttttgttgcatcaatggtgatgtc---------ttccccaatattgcttcaagttcatcattaacaaaaat |
343146 |
T |
|
| Q |
117 |
gtctatatcattttagcctttagtgtgttcaacttcttgagaaaagaatttgattgattattttatatttgcacaacctttccactaggggatagaacac |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
343147 |
atctatatcattttagcctttagtgtgttcaacttcttgagaaaagaacttgattgattattgtatatttgcacaacctttccactaggggatagaacac |
343246 |
T |
|
| Q |
217 |
cgcgctcttgcatacatatatcatctttaaatttgaaatatgcatcacaa |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
343247 |
cgcgctcttgcatacatatatcatctttaaatttgaaatatgcatcacaa |
343296 |
T |
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