View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1711_low_67 (Length: 273)

Name: NF1711_low_67
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1711_low_67
NF1711_low_67
[»] chr4 (7 HSPs)
chr4 (1-260)||(49485307-49485566)
chr4 (1-179)||(49701817-49701992)
chr4 (75-179)||(49532081-49532185)
chr4 (77-194)||(49521087-49521206)
chr4 (46-175)||(55070939-55071068)
chr4 (64-176)||(55066629-55066740)
chr4 (87-162)||(50240198-50240273)


Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 49485307 - 49485566
Alignment:
Q  1 tcttcaagagaaggaagtccccattttcttgggatatggaatctatcaagataacaaaaaattcttgagaggagcttggtcataattttgtgatttgacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49485307 tcttcaagagaaggaagtccccattttcttgggatatggaatctatcaagataacaaaaaattcttgagaggagcttggtcataattttgtgatttgacc 49485406  T
Q  101 atcttatgagcagttctctcagcaagagttcatctttattttctctcaaagatggaagaacctagtgataagaaaatcattagttttaatcatgctgaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49485407 atcttatgagcagttctctcagcaagagttcatctttattttctctcaaagatggaagaacctagtgataagaaaatcattagttttaatcatgctgaga 49485506  T
Q  201 atgtttatgtcagaagcatctgagggaattttccctgctatcaattcaaacattattact 260  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  49485507 atgtttatgtcagaagcatctgagggaatttgccctgctatcaattcaaacattattact 49485566  T

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Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 49701817 - 49701992
Alignment:
Q  1 tcttcaagagaaggaagtccccattttcttgggatatggaatctatcaagataacaaaaaattcttgagaggagcttggtcataattttgtgatttgacc 100  Q
    ||||||||||||| |||||||| ||| |   |||||||| || ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  49701817 tcttcaagagaagaaagtccccttttac---ggatatggtatttatgaagataacgaaaaattcttgagaggagcttggtcataattttgtgatttgacc 49701913  T
Q  101 atcttatgagcagttctctcagcaagagttcatctttattttctctcaaagatggaagaacctagtgataagaaaatca 179  Q
    |||||   || |||||||||| ||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||    
T  49701914 atctttcaagtagttctctcaacaaaagttcatctttcttttctctcaaagatggcagaacctaatgataagaaaatca 49701992  T

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Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 75 - 179
Target Start/End: Original strand, 49532081 - 49532185
Alignment:
Q  75 cttggtcataattttgtgatttgaccatcttatgagcagttctctcagcaagagttcatctttattttctctcaaagatggaagaacctagtgataagaa 174  Q
    |||||||||| |||||||| |||||||||||  |||||||||||||| ||| ||||||||||| ||| ||||||| ||||| ||||||||||||||||||    
T  49532081 cttggtcatagttttgtgaattgaccatcttccgagcagttctctcaacaaaagttcatctttctttcctctcaacgatggcagaacctagtgataagaa 49532180  T
Q  175 aatca 179  Q
    |||||    
T  49532181 aatca 49532185  T

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Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 77 - 194
Target Start/End: Original strand, 49521087 - 49521206
Alignment:
Q  77 tggtcataattttgtgatttgaccatcttatgagcagttctctcagcaagagttcatctttattttctctcaaagatggaagaacctagtgataagaaaa 176  Q
    |||||||| |||| |||||||||||||||  || ||||||||||| ||| ||||||||||| ||| ||||||| ||||| ||||||||||||| ||||||    
T  49521087 tggtcatagttttctgatttgaccatctttggaccagttctctcaacaaaagttcatctttctttcctctcaatgatggcagaacctagtgattagaaaa 49521186  T
Q  177 tc--attagttttaatcatg 194  Q
    ||  ||||||||||||||||    
T  49521187 tcatattagttttaatcatg 49521206  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 46 - 175
Target Start/End: Complemental strand, 55071068 - 55070939
Alignment:
Q  46 tcaagataacaaaaaattcttgagaggagcttggtcataattttgtgatttgaccatcttatgagcagttctctcagcaagagttcatctttattttctc 145  Q
    |||||||| ||||||| | |||||||| || ||||||||| | ||| || |||| ||||| | ||||||||||||| ||| || ||||| || |||||||    
T  55071068 tcaagataccaaaaaacttttgagaggcgcctggtcataactatgtaatctgactatcttctaagcagttctctcaacaaaaggtcatccttcttttctc 55070969  T
Q  146 tcaaagatggaagaacctagtgataagaaa 175  Q
     ||||||||| |||||||| | ||||||||    
T  55070968 ccaaagatggcagaacctattaataagaaa 55070939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 55066740 - 55066629
Alignment:
Q  64 cttgagaggagcttggtcataattttgtgatttgaccatcttatgagcagttctctcagcaagagttcatctttattttctctcaaagatggaagaacct 163  Q
    ||||||||| | |||||| ||||||||| ||||||||||||| ||| ||||||||||| |||  |||||||||  ||||||  || ||||||||| ||||    
T  55066740 cttgagaggcgtttggtcgtaattttgtaatttgaccatcttctgaacagttctctcaacaaaggttcatcttgcttttcttgcagagatggaag-acct 55066642  T
Q  164 agtgataagaaaa 176  Q
    | | |||||||||    
T  55066641 attaataagaaaa 55066629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 50240198 - 50240273
Alignment:
Q  87 tttgtgatttgaccatcttatgagcagttctctcagcaagagttcatctttattttctctcaaagatggaagaacc 162  Q
    ||||||||||| ||||||| |||||| |||||| | ||||||||||||||| ||| |||  |||||||| ||||||    
T  50240198 tttgtgatttggccatcttctgagcaattctcttaacaagagttcatctttctttcctcgtaaagatggcagaacc 50240273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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