View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_low_7 (Length: 586)
Name: NF1711_low_7
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 16 - 571
Target Start/End: Original strand, 2272233 - 2272788
Alignment:
| Q |
16 |
cagttataacactaacattgtatttatgtcaactgttttcaaatacagtggtgtattttgcatcctgatttggctggtgctgttgactatgcttgtagtt |
115 |
Q |
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| T |
2272233 |
cagttataacactaacattgtatttatgtcaactgttttcaaatacagtggtgtattttgcatcctgatttggctggtgctgttgactatgcttgtagtt |
2272332 |
T |
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| Q |
116 |
tatcaaattgtactacattgggatatggttcttgtaatggtttgagtcttcttgtgcatttaatatgtattgtcaagtgaataatcagaaaggattggaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272333 |
tatcaaattgtactacattgggatatggttcttgtaatggtttgagtcttcttgtgcatttaatatgtattgtcaagtgaataatcagaaaggattggaa |
2272432 |
T |
|
| Q |
216 |
ttgagacttctctggtttggctattttacagatcatgattcatgatccatcagaaagttttgctcaaggattcacacaaatccaagaggaatctatctgt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272433 |
ttgagacttctctggtttggctattttacagatcatgattcatgatccatcagaaagttttgctcaaggattcacacaaatccaagaggaatctatctgt |
2272532 |
T |
|
| Q |
316 |
ttaattcatctgactagtttataattattgaattgacggtggaaattgattcatctttatcctcgctctaggaatgtagaataatttacgagatttggct |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272533 |
ttaattcatctgactagtttataattattgaattgacggtggaaattgattcatctttatcctcgctctaggaatgtagaataatttacgagatttggct |
2272632 |
T |
|
| Q |
416 |
cggtgtctaattttaccattctttttcataaatagcagaagaatgaataatgtttaaggacagacttaatgttcgtgtccaagacaaagtgaatatatgt |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272633 |
cggtgtctaattttaccattctttttcataaatagcagaagaatgaataatgcttaaggacagacttaatgttcgtgtccaagacaaagtgaatatatgt |
2272732 |
T |
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| Q |
516 |
tgatgttcatatcagtttattaatttgaattgtctagcttttcaattggttctgtg |
571 |
Q |
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| T |
2272733 |
tgatgttcatatcagtttattaatttgaattgtctagcttttcaattggttctgtg |
2272788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 315 - 389
Target Start/End: Complemental strand, 40772552 - 40772478
Alignment:
| Q |
315 |
tttaattcatctgactagtttataattattgaattgacggtggaaattgattcatctttatcctcgctctaggaa |
389 |
Q |
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|||||| ||||||||||||||| | ||||||||||||| ||||||||||||| ||||||| |||||| |||||| |
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| T |
40772552 |
tttaatccatctgactagtttacagttattgaattgacaatggaaattgattcctctttattctcgctttaggaa |
40772478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 83 - 239
Target Start/End: Original strand, 46353776 - 46353947
Alignment:
| Q |
83 |
atttggctggtgctgttgactatgcttgtagtttatcaaattgtactacattgggatatgg---ttcttgtaatggtttgagtctt-------------c |
166 |
Q |
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||||||||||| | |||| ||||| ||||| |||||| |||||||| |||| |||||||| |||||||||||||||||||||| | |
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| T |
46353776 |
atttggctggtagtattgattatgcatgtagcttatcagattgtactgcattaggatatggatcttcttgtaatggtttgagtcttgaagggaatgcttc |
46353875 |
T |
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| Q |
167 |
ttgtgcatttaatatgtattgtcaagtgaataatcagaaaggattggaattgagacttctctggtttggctat |
239 |
Q |
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|| ||||||||||||||||| ||||||| |||||||| ||||||||| |||| || || || ||||||||||| |
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| T |
46353876 |
ttatgcatttaatatgtattatcaagtgcataatcag-aaggattgggattgtgatttttcaggtttggctat |
46353947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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