View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_low_71 (Length: 258)
Name: NF1711_low_71
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_low_71 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 14791036 - 14791252
Alignment:
| Q |
26 |
ttagagtctagatttattaaccgtgtgaatgtgttaccttgaatgcggcagtccaaatccatgcaaattatgaaggagcttaggaaaaatgttggacttg |
125 |
Q |
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| T |
14791036 |
ttagagtctagatttattaaccgtgtgaatgtgttaccttgaatgcagcagtccaaatccatgcaaattatgaaggagcttaggcaaaatgttggacttg |
14791135 |
T |
|
| Q |
126 |
ggtttaaatccatgcaaattgtgcaatgctaactagctaagtggtatagaaggatccacaatagcagaatccagatttactcacatcgatatataaaatt |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14791136 |
ggtttaaatccatgcaaattgtgcaatgctaactagctaagtggtatagaaggatccacaatagcagaatccagatttactcacatcgatatataaaatt |
14791235 |
T |
|
| Q |
226 |
ttgcttcagcaaatata |
242 |
Q |
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||||||||||||||||| |
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| T |
14791236 |
ttgcttcagcaaatata |
14791252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 26 - 242
Target Start/End: Complemental strand, 17541469 - 17541253
Alignment:
| Q |
26 |
ttagagtctagatttattaaccgtgtgaatgtgttaccttgaatgcggcagtccaaatccatgcaaattatgaaggagcttaggaaaaatgttggacttg |
125 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17541469 |
ttagagtctagatttattaaccgtgtgaatgtgttaccttgaatgcagcagtccaaatccatgcaaattatgaaggagcttaggcaaaatgttggacttg |
17541370 |
T |
|
| Q |
126 |
ggtttaaatccatgcaaattgtgcaatgctaactagctaagtggtatagaaggatccacaatagcagaatccagatttactcacatcgatatataaaatt |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17541369 |
ggtttaaatccatgcaaattgtgcaatgctaactagctaagtggtatagaaggatccacaatagcagaatccagatttactcacatcgatatataaaatt |
17541270 |
T |
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| Q |
226 |
ttgcttcagcaaatata |
242 |
Q |
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|||||||| |||||||| |
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| T |
17541269 |
ttgcttcaccaaatata |
17541253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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