View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_low_73 (Length: 250)
Name: NF1711_low_73
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_low_73 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 343558 - 343350
Alignment:
| Q |
16 |
atgtaaataaaagcaataaatgttatctacaaagtatgaaataggttagtaaaataaagaagaaaagatgatacaagaaatatttactaacttttaagaa |
115 |
Q |
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| T |
343558 |
atgtaaataaaagcaataaatgttatctacaaaatatgaaataggttagtaaaataaagaagaaaagatgatacaagaaatatttcctaacttttaagaa |
343459 |
T |
|
| Q |
116 |
gaggggtttatacaagtctcctaacaaaattgtttatggattttaaataaggtaattataaataaaagaaa---attttatatgtctattttcaatgtat |
212 |
Q |
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|||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
343458 |
gaggggcttatacaagtgtcctaagaaaattgtttatggattttaaataaggtaattataaataaaagaaagtcgttttatatgtttattttcaatgtat |
343359 |
T |
|
| Q |
213 |
aaaacacaa |
221 |
Q |
| |
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||||||||| |
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| T |
343358 |
aaaacacaa |
343350 |
T |
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