View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_low_74 (Length: 250)
Name: NF1711_low_74
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1711_low_74 |
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[»] chr1 (8 HSPs) |
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[»] chr3 (1 HSPs) |
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[»] chr8 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 48653729 - 48653492
Alignment:
Q |
13 |
aaaatcatcgaagaaaatgagatcggaagctcccattcatgtcctccttatttcttatccagcacaaggacacattaatcctttgcttagtctagcaaag |
112 |
Q |
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T |
48653729 |
aaaatcatcgaagaaaatgagatcggaagctcccattcatgtcctccttatttcttatccagcacaaggacacattaatcctttgcttagtctagcaaag |
48653630 |
T |
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Q |
113 |
tgtgttgctgcaaagggtgcttctgtcattttcatgacaacagaaagagctggaaaagacataagaactgttaacaacatcattgaaaaatcattcactc |
212 |
Q |
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T |
48653629 |
tgtgttgctgcaaagggtgcttctgtcattttcatcacaacagaaagagctggaaaagacataagaactgttaacaacatcattgaaaaatcattcactc |
48653530 |
T |
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Q |
213 |
caattggtgatggttcactcacttttgagttctttgat |
250 |
Q |
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T |
48653529 |
caattggtgatggttcactcacttttgagttctttgat |
48653492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 23 - 246
Target Start/End: Original strand, 48617736 - 48617959
Alignment:
Q |
23 |
aagaaaatgagatcggaagctcccattcatgtcctccttatttcttatccagcacaaggacacattaatcctttgcttagtctagcaaagtgtgttgctg |
122 |
Q |
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T |
48617736 |
aagaaaatgggatccgaagcaaacactcatatccttcttatctcttatccagcacaaggacacataaaccctcttcttagactagcaaagtgtcttgctg |
48617835 |
T |
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Q |
123 |
caaagggtgcttctgtcattttcatgacaacagaaagagctggaaaagacataagaactgttaacaacatcattgaaaaatcattcactccaattggtga |
222 |
Q |
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T |
48617836 |
caaagggtgcttctgtcatcttcatcacaacagagaaagctggcaaagacataagaactgttaacaatatcattgaaaaatcactcacttcaattggtga |
48617935 |
T |
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Q |
223 |
tggttcactcacttttgagttctt |
246 |
Q |
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T |
48617936 |
tggttctcttacttttgagttctt |
48617959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 59 - 250
Target Start/End: Complemental strand, 11547794 - 11547603
Alignment:
Q |
59 |
cttatttcttatccagcacaaggacacattaatcctttgcttagtctagcaaagtgtgttgctgcaaagggtgcttctgtcattttcatgacaacagaaa |
158 |
Q |
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T |
11547794 |
cttatctcttttccaggacaaggacacataaaccctcttcttagattagcaaagtgtcttgctgcaaagggtgcttctgtcatcttcatcacaacaaaga |
11547695 |
T |
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Q |
159 |
gagctggaaaagacataagaactgttaacaacatcattgaaaaatcattcactccaattggtgatggttcactcacttttgagttctttgat |
250 |
Q |
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T |
11547694 |
aagctggcaaagacatacaaacggttaacaacatcgttgaaaaatcagtcacatcaataggtaatggttctctcacttttgagttctttgat |
11547603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 38 - 250
Target Start/End: Complemental strand, 48662118 - 48661906
Alignment:
Q |
38 |
gaagctcccattcatgtcctccttatttcttatccagcacaaggacacattaatcctttgcttagtctagcaaagtgtgttgctgcaaagggtgcttctg |
137 |
Q |
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T |
48662118 |
gaagctcccattcatatcctccttgtttcttttccagcacaaggacacataaaccctcttcttagactaggaaagtgtcttgctgcaaaaggtgcctctg |
48662019 |
T |
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Q |
138 |
tcattttcatgacaacagaaagagctggaaaagacataagaactgttaacaacatcattgaaaaatcattcactccaattggtgatggttcactcacttt |
237 |
Q |
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T |
48662018 |
tcattttcaccacaacagagaaagctggcaaagacatgggaattgttgacgacatcaccaacaaattagcaactccgataggtgatggttctctcatttt |
48661919 |
T |
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Q |
238 |
tgagttctttgat |
250 |
Q |
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T |
48661918 |
cgagttctttgat |
48661906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 158
Target Start/End: Complemental strand, 48667691 - 48667587
Alignment:
Q |
54 |
tcctccttatttcttatccagcacaaggacacattaatcctttgcttagtctagcaaagtgtgttgctgcaaagggtgcttctgtcattttcatgacaac |
153 |
Q |
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T |
48667691 |
tcctccttgtttcttttccagcacaaggacacataaaccctcttcttagactaggtaaatgtcttgctgcaaagggtgcttctgtcatcttcatcacaac |
48667592 |
T |
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Q |
154 |
agaaa |
158 |
Q |
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T |
48667591 |
agaaa |
48667587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 26 - 174
Target Start/End: Complemental strand, 48629434 - 48629286
Alignment:
Q |
26 |
aaaatgagatcggaagctcccattcatgtcctccttatttcttatccagcacaaggacacattaatcctttgcttagtctagcaaagtgtgttgctgcaa |
125 |
Q |
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T |
48629434 |
aaaatgggatccgaagttccccttcatatcctacttgtttcttttccagcacaaggacacataaaccctcttcttagactaggaaaatgtcttgctgcaa |
48629335 |
T |
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Q |
126 |
agggtgcttctgtcattttcatgacaacagaaagagctggaaaagacat |
174 |
Q |
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T |
48629334 |
agggtgcctctgtcatctttactacaacagagaaagcaggcaaagacat |
48629286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 250
Target Start/End: Complemental strand, 48585893 - 48585699
Alignment:
Q |
56 |
ctccttatttcttatccagcacaaggacacattaatcctttgcttagtctagcaaagtgtgttgctgcaaagggtgcttctgtcattttcatgacaacag |
155 |
Q |
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T |
48585893 |
ctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacag |
48585794 |
T |
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Q |
156 |
aaagagctggaaaagacataagaactgttaacaacatcattgaaaaatcattcactccaattggtgatggttcactcacttttgagttctttgat |
250 |
Q |
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T |
48585793 |
agacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttcgctttcgagttctttgat |
48585699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 249
Target Start/End: Complemental strand, 48640466 - 48640273
Alignment:
Q |
56 |
ctccttatttcttatccagcacaaggacacattaatcctttgcttagtctagcaaagtgtgttgctgcaaagggtgcttctgtcattttcatgacaacag |
155 |
Q |
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T |
48640466 |
ctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacag |
48640367 |
T |
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Q |
156 |
aaagagctggaaaagacataagaactgttaacaacatcattgaaaaatcattcactccaattggtgatggttcactcacttttgagttctttga |
249 |
Q |
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T |
48640366 |
agacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttcgctttcgagttctttga |
48640273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 38 - 250
Target Start/End: Original strand, 19665107 - 19665319
Alignment:
Q |
38 |
gaagctcccattcatgtcctccttatttcttatccagcacaaggacacattaatcctttgcttagtctagcaaagtgtgttgctgcaaagggtgcttctg |
137 |
Q |
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T |
19665107 |
gaagcacccattcacatcctccttatctcatatccagcacaaggacacataaaccctcttcttagactagcaaagtgtcttgctgcaaagggttcttcag |
19665206 |
T |
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Q |
138 |
tcattttcatgacaacagaaagagctggaaaagacataagaactgttaacaacatcattgaaaaatcattcactccaattggtgatggttcactcacttt |
237 |
Q |
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T |
19665207 |
tcatcttcatcactacagagaaagctggcaaagacatgcaaactgttaacaacatcactcacaaatcactcactccaataggtgatggttctctcatttt |
19665306 |
T |
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Q |
238 |
tgagttctttgat |
250 |
Q |
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T |
19665307 |
ccacttctttgat |
19665319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 68 - 250
Target Start/End: Complemental strand, 27224524 - 27224342
Alignment:
Q |
68 |
tatccagcacaaggacacattaatcctttgcttagtctagcaaagtgtgttgctgcaaagggtgcttctgtcattttcatgacaacagaaagagctggaa |
167 |
Q |
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T |
27224524 |
tatccagcacaaggacacataaatcctatgcttagactaggaaagtgtcttgcatcaaagggttcttctgttatcttcatcacaacagagaaagctggca |
27224425 |
T |
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Q |
168 |
aagacataagaactgttaacaacatcattgaaaaatcattcactccaattggtgatggttcactcacttttgagttctttgat |
250 |
Q |
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T |
27224424 |
aagaattgagaactgttaacaatatcactgaaaaattagtcattccagttggtaatggttctctcacatttcagttctttgat |
27224342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 38 - 249
Target Start/End: Complemental strand, 27228757 - 27228546
Alignment:
Q |
38 |
gaagctcccattcatgtcctccttatttcttatccagcacaaggacacattaatcctttgcttagtctagcaaagtgtgttgctgcaaagggtgcttctg |
137 |
Q |
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T |
27228757 |
gaagctcccatcaatattctccttgtatcatatccagcacaaggacacataaatcctatgcttagattaggaaagtgtcttgcatcaaagggttcttctg |
27228658 |
T |
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Q |
138 |
tcattttcatgacaacagaaagagctggaaaagacataagaactgttaacaacatcattgaaaaatcattcactccaattggtgatggttcactcacttt |
237 |
Q |
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T |
27228657 |
ttatcttcatcacaactgagaaagctggcagagagttgagaactgttaacaacatcattgataaatcagtcattccagttggtaatggttctctcgcatt |
27228558 |
T |
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Q |
238 |
tgagttctttga |
249 |
Q |
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||||||||||| |
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T |
27228557 |
cgagttctttga |
27228546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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