View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_low_76 (Length: 249)
Name: NF1711_low_76
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_low_76 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 51679689 - 51679450
Alignment:
| Q |
1 |
ttctatggatttgaactttagatggtacaataggtacttgaactgcttcacaatgcacacaacttctacatcttctttcacactttggaggccttgaccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51679689 |
ttctatggatttgaactttagatggtacaataggtacttgaactgcttcacaatgcacacaacttctacatcttctttcacactttggaggccttgaccc |
51679590 |
T |
|
| Q |
101 |
tatttgaagtttctctgctaacattgatccattctcttccatgccattctgcacatgcataaatatatattgagatatggagctatagagatatnnnnnn |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51679589 |
tatttgaagtttctctgctaacattgatccattctcttccatgccattctgcacatgcataaatatatattgagatatggagctatagagatataaaaaa |
51679490 |
T |
|
| Q |
201 |
ntatatatgatttatgaatttgatattgtaatacctttgc |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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| T |
51679489 |
atatatatgatttatgaatttgatattgtaatacctttgc |
51679450 |
T |
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