View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_low_80 (Length: 248)
Name: NF1711_low_80
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_low_80 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 43862317 - 43862551
Alignment:
| Q |
1 |
cctttaatccacatgcagctgcttacaagattttaatttgtttggcatgttagattagttatctatgataacaaaattttatggaattataactttgttt |
100 |
Q |
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| T |
43862317 |
cctttaatccacatgcagctgcttacaagattttaatttgtttggcatgttagattagttatctatgataacaaaattttatggaattataactttgttt |
43862416 |
T |
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| Q |
101 |
aactttttcatggtcttcgagaaattttagnnnnnnnnnnaatatttttaaatataataaaaaatagctggacttgcgtgtgatgaaattctatgaaaat |
200 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43862417 |
aactttttcatggtcttcgagaaattttagttttttttttaatatttttaaatataataaaaaatagctggacttgcgtgtgatgaaattctatgaaaat |
43862516 |
T |
|
| Q |
201 |
tgtccgtctttgtatatatatgctttcattttgtctgtg |
239 |
Q |
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|||||||||||| |||||||||||||||||| |||| |
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| T |
43862517 |
tgtccgtctttg----tatatgctttcattttgtgtgtg |
43862551 |
T |
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