View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_low_84 (Length: 243)
Name: NF1711_low_84
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_low_84 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 41760363 - 41760609
Alignment:
| Q |
1 |
atgacgtgatttgattgaatacatgtgtaaagaaacgaattagataattcaacttgttcaaacttagacgaaagattcagtgcgattaatcaaatcattc |
100 |
Q |
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| T |
41760363 |
atgacgtgatttgattgaatacatgtgtaaagaaacgaattagataattcaacttattcaaacttagacgaaagattcagtgcgattaatcaaatcattc |
41760462 |
T |
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| Q |
101 |
actactaata-----tttgtatgtgtgaagnnnnnnnnnttacatgtgataaaaaattaatctcatttagttatttgaccaactctactcataatatgac |
195 |
Q |
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| T |
41760463 |
actactaatactgtatttgtatgtgtgaag-aaaaaaaattacatgtgataaaaaattaatctcatttagttatttgaccaactctactcataatatgac |
41760561 |
T |
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| Q |
196 |
agagagataataaagaatgagtaaaattagtttatgccctttgctact |
243 |
Q |
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| T |
41760562 |
agagagataataaagaatgagtaaaattagtttatgctctttgatact |
41760609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 41760158 - 41760219
Alignment:
| Q |
1 |
atgacgtgatttgattgaatacatgtgta---aagaaacgaattagataattcaacttgttcaa |
61 |
Q |
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| T |
41760158 |
atgacgtgatttgattgaatacatgtgtacaaaagaatcg--ttagatagttcaacttgttcaa |
41760219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 41760320 - 41760357
Alignment:
| Q |
44 |
ataattcaacttgttcaaacttagacgaaagattcagt |
81 |
Q |
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| T |
41760320 |
ataattcaactttttcaaacttagacgaaaggttcagt |
41760357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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