View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_low_85 (Length: 241)
Name: NF1711_low_85
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_low_85 |
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Alignment Details
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 25 - 229
Target Start/End: Original strand, 28273829 - 28274029
Alignment:
| Q |
25 |
ataaaataaaacatggaggaattgctacctaaataactaatttttgagggatcatccctcactgactcaaaaatgaagtgaaatttgtatcgtaatgcac |
124 |
Q |
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|||| |||||| || ||||| || ||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||| |
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| T |
28273829 |
ataagataaaatatagaggagttcctatctaaataactaaattttgagggatcatccctca--gactcaaaaatgaagtgaaatctgtattgtaatgcac |
28273926 |
T |
|
| Q |
125 |
tagaaaatactccttgagaaggattagtatatatataacaaattttttcgactagcaccgaaacttgaagattttcctcaaacatgagatgaaactgtat |
224 |
Q |
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|
|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||| |||||||||| |
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| T |
28273927 |
tagaaaatactccttgagaaggattagt-tatatataacaaattttttcga-tagcaccgaaacttgaagattttccttaaacgtgagaagaaactgtat |
28274024 |
T |
|
| Q |
225 |
gttct |
229 |
Q |
| |
|
||||| |
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|
| T |
28274025 |
gttct |
28274029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 50 - 235
Target Start/End: Original strand, 28258264 - 28258447
Alignment:
| Q |
50 |
tacctaaataactaatttttgagggatcatccctcactgactcaaaaatgaagtgaaatttgtatcgtaatgcactagaaaatactccttgagaaggatt |
149 |
Q |
| |
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||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||| ||||| |||||||||||||||| |||| |||| |||| |
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| T |
28258264 |
tacctaaataactaatttttgagggatcacccctcgctgactaaaaaatgaagtgaaatatgtatttcaatgcactagaaaatattcctcaagaaagatt |
28258363 |
T |
|
| Q |
150 |
agtatatatataacaaattttttcgactagcaccgaaacttgaagattttcctcaaacatgagatgaaactgtatgttcttaatgg |
235 |
Q |
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| | |||||| |||||| ||||| ||||||| ||||||||| || |||| ||||||||||||| |||||||||||||||| |||| |
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| T |
28258364 |
aat-tatataaaacaaa-tttttatactagcatcgaaacttggagtttttactcaaacatgagaagaaactgtatgttcttgatgg |
28258447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 11656479 - 11656446
Alignment:
| Q |
1 |
cgaggaccaaaagtgtaattaagcataaaataaa |
34 |
Q |
| |
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|||||||||||||||||||||||| ||||||||| |
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|
| T |
11656479 |
cgaggaccaaaagtgtaattaagcctaaaataaa |
11656446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 38859162 - 38859196
Alignment:
| Q |
1 |
cgaggaccaaaagtgtaattaagcataaaataaaa |
35 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
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|
| T |
38859162 |
cgaggaccaaaagtgtaattaagcctaaaataaaa |
38859196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 43973961 - 43973995
Alignment:
| Q |
1 |
cgaggaccaaaagtgtaattaagcataaaataaaa |
35 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
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|
| T |
43973961 |
cgaggaccaaaagtgtaattaagcctaaaataaaa |
43973995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 8647959 - 8647991
Alignment:
| Q |
1 |
cgaggaccaaaagtgtaattaagcataaaataa |
33 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
8647959 |
cgaggaccaaaagtgtaattaagcctaaaataa |
8647991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 8528336 - 8528384
Alignment:
| Q |
49 |
ctacctaaataactaatttttgagggatcatccctcactgactcaaaaa |
97 |
Q |
| |
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|||||||||||||| | ||||||||||||| ||| | |||||||||||| |
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|
| T |
8528336 |
ctacctaaataactgagttttgagggatcagcccccgctgactcaaaaa |
8528384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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